Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0000261

Physical Location & Seq

Genomic Coordinates Forward (+)

38500582 .. 38501685

Gene Structure 1104 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G026570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGGATTCTGAAGATAGTCTTATAAGTGATAGAAAAAAGAGAGAAAGACGTGTATGGACAGATGAGCAGGAAGATACTCTTCTAAACATCCTAGAAGAACTTGTTGCAAATGGTCATGCTCGTAAAAATGGCACATTCAAACCTGGTACATCAATTATGATAGAGAATGCTTTACTGGATAAATTTCCCAATTCTGGACTAAAGTATAGTCCACATGTTGAGTCAAAGATTAAGGACTTTAAGAAAAAATATGCTGTGGTATATGACATGCTCCAAAAAAGTGGATTTGGATGGAATGATGTGAGGAAGTGCGTTGAGGTTGACAATGATGAGGCATGGTATGCATATGTCAAGCATCACAAGGATGCATCATGGAGGGGCAAACCATTCCCACGTTATGAAACATTTGCTCATATATTTGGAGTGGACCGTGCTATTGGAAAGGCTGCCAAAGTACCTGCTGCAATAGTAGAGGAAGTTAATGAAGAGCTTGAAAACCAAGAGCATGTTGATGCATTTGATTCTAAGGTAGAAGCAGACCAACTATCCACTGCTAAATCTGAGTCGACTTCTAAATTCGAGTCTACAAGCACGAGTAGGAGGAGGAAAAGAGAGGATGATGATAACATAGTTCGTGGCTTAGACAAGTTTGCTGCAACATTCAAAGAAGTGATGCAGACTTCAAATGAGCAGATTCGCCTTCTTGTTGAATACTTGCAGCCAAAAGGTAGCAAAAAAGATGAGGTACGAGCTAAAAAAGATGAATTGTGGGCTGAGCTCTTAAAGTTAAACCTTTCAACAACAAATCGAATCAAAGCATTGAAAATTCTAATGGCTGATTCTGCTGAGCTTTTCTTGGCTCTAGATAAAGAGGAAGAAAAGATGGAGTTCATCACACAGCTGCTTCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000123 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006325 GO:0006338 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0031248 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0051276 GO:0070013 GO:0071704 GO:0071840 GO:1901564 GO:1902493 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MRG Tudor-knot

Protein Analysis

303

Amino Acids

34.91

Weight (kDa)

5.85

Isoelectric Point (pI)

39.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-bind_3	PF12776	19 - 116	7.6e-12	Myb/SANT-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000261)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g18411 FvH4_1g22560 FvH4_1g24290 FvH4_1g24290 FvH4_1g24290 FvH4_1g29434 FvH4_2g04031 FvH4_2g04811 FvH4_2g07610 FvH4_2g09412 FvH4_3g15552 FvH4_3g30720 FvH4_4g05810 FvH4_4g09541 FvH4_4g15171 FvH4_6g09145 FvH4_6g49541 FvH4_7g00320 FvH4_7g11552
malus_domestica	MD00G1072400.v1.1 MD01G1188100.v1.1 MD07G1132000.v1.1 MD08G1190700.v1.1 MD10G1011200.v1.1 MD14G1164100.v1.1 MD15G1289200.v1.1 MD15G1289300.v1.1 MD17G1245100.v1.1
prunus_persica	Prupe.6G228600_v2.0.a1
pyrus_communis	pycom01g07070 pycom02g06890 pycom02g06900 pycom02g13930 pycom04g07470 pycom04g11770 pycom04g21930 pycom05g08520 pycom06g04490 pycom06g09560 pycom07g03750 pycom08g08760 pycom08g13660 pycom09g11520 pycom09g14250 pycom09g14770 pycom10g00720 pycom10g01290 pycom10g10480 pycom10g15700 pycom12420g00130 pycom12g05380 pycom12g08750 pycom13g19010 pycom13g29080 pycom14g06210 pycom14g13680 pycom14g19850 pycom15g22070 pycom15g23440 pycom15g24950 pycom15g25280 pycom16g11100 pycom16g17080 pycom16g26310 pycom17g15650 pycom17g15670 pycom17g20370
rosa_chinensis	RchiOBHm_Chr1g0373591 RchiOBHm_Chr2g0105551 RchiOBHm_Chr2g0106711 RchiOBHm_Chr2g0106721 RchiOBHm_Chr7g0219611
rosa_laevigata	RLG00000013773 RLG00000017436 RLG00000017533
rosa_multiflora	Rmu_co8001842.1_g000001 Rmu_co8158450.1_g000001 Rmu_sc0000516.1_g000067 Rmu_sc0000566.1_g000009 Rmu_sc0000965.1_g000025 Rmu_sc0001718.1_g000001 Rmu_sc0001719.1_g000020 Rmu_sc0001822.1_g000025 Rmu_sc0002219.1_g000003 Rmu_sc0002460.1_g000059 Rmu_sc0002757.1_g000001 Rmu_sc0002860.1_g000001 Rmu_sc0004531.1_g000001 Rmu_sc0005558.1_g000003 Rmu_sc0011218.1_g000001 Rmu_sc0011998.1_g000003 Rmu_sc0015560.1_g000002 Rmu_sc0015560.1_g000003
rosa_roxburghii	Rroxscaffold_1G00004200 Rroxscaffold_1G00026570 Rroxscaffold_1G00040370 Rroxscaffold_1G00044120 Rroxscaffold_1G00049590 Rroxscaffold_1G00059030 Rroxscaffold_2G00108440 Rroxscaffold_2G00108850 Rroxscaffold_2G00130680 Rroxscaffold_2G00132980 Rroxscaffold_2G00136860 Rroxscaffold_3G00218610 Rroxscaffold_4G00309940 Rroxscaffold_6G00405560
rosa_rugosa	Rorug02G0138000 Rorug02G0138100 Rorug02G0138100 Rorug06G0154000
rosa_samantha	Rh1AG121500 Rh1CG116300 Rh2AG189000 Rh2AG509600 Rh2BG200200 Rh2CG194100 Rh2DG195300 Rh5AG114400 Rh5DG488800
rosa_wichuraiana	Rw0G022020 Rw1G023650 Rw1G026380 Rw1G034750 Rw1G040770 Rw2G014870 Rw2G016560 Rw4G031190 Rw5G026570 Rw6G003020 Rw6G012060 Rw7G014300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	23
Acc36I	ACCTGC	1 cut(s)	466
AccI	GTMKAC	2 cut(s)	566, 584
AcsI	RAATTY	3 cut(s)	182, 575, 825
AcuI	CTGAAG	1 cut(s)	30
AfaI	GTAC	3 cut(s)	148, 456, 747
AfiI	CCNNNNNNNGG	1 cut(s)	194
AflIII	ACRYGT	2 cut(s)	49, 214
AgsI	TTSAA	7 cut(s)	139, 494, 664, 684, 710, 798, 823
AjiI	CACGTC	1 cut(s)	50
AjnI	CCWGG	1 cut(s)	142
AluBI	AGCT	5 cut(s)	490, 752, 778, 850, 901
AluI	AGCT	5 cut(s)	490, 752, 778, 850, 901
Alw21I	GWGCWC	1 cut(s)	780
ApeKI	GCWGC	5 cut(s)	446, 461, 653, 718, 901
ApoI	RAATTY	3 cut(s)	182, 575, 825
AspS9I	GGNCC	1 cut(s)	427
AvaII	GGWCC	1 cut(s)	427
BanII	GRGCYC	1 cut(s)	780
BauI	CACGAG	1 cut(s)	592
Bbv12I	GWGCWC	1 cut(s)	780
BbvI	GCAGC	5 cut(s)	433, 448, 640, 730, 888
BccI	CCATC	2 cut(s)	285, 877
BciT130I	CCWGG	1 cut(s)	144
BfaI	CTAG	2 cut(s)	92, 863
BfuAI	ACCTGC	1 cut(s)	466
BisI	GCNGC	5 cut(s)	447, 462, 654, 719, 902
BlpI	GCTNAGC	2 cut(s)	774, 846
BlsI	GCNGC	5 cut(s)	448, 463, 655, 720, 903
Bme1390I	CCNGG	1 cut(s)	144
Bme18I	GGWCC	1 cut(s)	427
BmgBI	CACGTC	1 cut(s)	50
BmgT120I	GGNCC	1 cut(s)	427
BmrFI	CCNGG	1 cut(s)	144
BmsI	GCATC	5 cut(s)	355, 364, 377, 502, 663
Bpu1102I	GCTNAGC	2 cut(s)	774, 846
Bsc4I	CCNNNNNNNGG	1 cut(s)	194
Bse1I	ACTGG	1 cut(s)	180
BseBI	CCWGG	1 cut(s)	144
BseGI	GGATG	4 cut(s)	87, 296, 370, 622
BseLI	CCNNNNNNNGG	1 cut(s)	194
BseMII	CTCAG	3 cut(s)	552, 765, 837
BseNI	ACTGG	1 cut(s)	180
BseRI	GAGGAG	1 cut(s)	616
BseXI	GCAGC	5 cut(s)	433, 448, 640, 730, 888
BsiHKAI	GWGCWC	1 cut(s)	780
BslI	CCNNNNNNNGG	1 cut(s)	194
BsmI	GAATGC	1 cut(s)	172
Bsp1286I	GDGCHC	1 cut(s)	780
Bsp1720I	GCTNAGC	2 cut(s)	774, 846
BspCNI	CTCAG	3 cut(s)	553, 766, 838
BspMI	ACCTGC	1 cut(s)	466
BspQI	GCTCTTC	1 cut(s)	480
BsrI	ACTGG	1 cut(s)	180
BssSI	CACGAG	1 cut(s)	592
Bst2BI	CACGAG	1 cut(s)	592
Bst2UI	CCWGG	1 cut(s)	144
Bst4CI	ACNGT	1 cut(s)	431
Bst6I	CTCTTC	2 cut(s)	84, 480
BstAPI	GCANNNNNTGC	1 cut(s)	341
BstDEI	CTNAG	5 cut(s)	525, 561, 640, 774, 846
BstF5I	GGATG	4 cut(s)	87, 296, 370, 622
BstMWI	GCNNNNNNNGC	2 cut(s)	341, 842
BstNI	CCWGG	1 cut(s)	144
BstNSI	RCATGY	3 cut(s)	218, 271, 509
BstSCI	CCNGG	1 cut(s)	142
BstV1I	GCAGC	5 cut(s)	433, 448, 640, 730, 888
BstXI	CCANNNNNNTGG	1 cut(s)	281
BtrI	CACGTC	1 cut(s)	50
BtsCI	GGATG	4 cut(s)	87, 296, 370, 622
BtsI	GCAGTG	1 cut(s)	549
BtsIMutI	CAGTG	1 cut(s)	549
BveI	ACCTGC	1 cut(s)	466
Cfr13I	GGNCC	1 cut(s)	427
CsiI	ACCWGGT	1 cut(s)	142
Csp6I	GTAC	3 cut(s)	147, 455, 746
CviAII	CATG	6 cut(s)	116, 215, 268, 336, 372, 506
CviQI	GTAC	3 cut(s)	147, 455, 746
DdeI	CTNAG	5 cut(s)	525, 561, 640, 774, 846
Eam1104I	CTCTTC	2 cut(s)	84, 480
EarI	CTCTTC	2 cut(s)	84, 480
Ecl136II	GAGCTC	1 cut(s)	778
Eco24I	GRGCYC	1 cut(s)	780
Eco47I	GGWCC	1 cut(s)	427
Eco53kI	GAGCTC	1 cut(s)	778
Eco57I	CTGAAG	1 cut(s)	30
EcoICRI	GAGCTC	1 cut(s)	778
EcoRII	CCWGG	1 cut(s)	142
EcoT22I	ATGCAT	3 cut(s)	346, 370, 517
EcoT38I	GRGCYC	1 cut(s)	780
FaeI	CATG	6 cut(s)	119, 218, 271, 339, 375, 509
FalI	AAGNNNNNCTT	3 cut(s)	35, 63, 95
FatI	CATG	6 cut(s)	115, 214, 267, 335, 371, 505
FauNDI	CATATG	1 cut(s)	346
FblI	GTMKAC	2 cut(s)	566, 584
Fnu4HI	GCNGC	5 cut(s)	447, 462, 654, 719, 902
FokI	GGATG	4 cut(s)	74, 303, 377, 629
FriOI	GRGCYC	1 cut(s)	780
Fsp4HI	GCNGC	5 cut(s)	447, 462, 654, 719, 902
FspBI	CTAG	2 cut(s)	92, 863
GluI	GCNGC	5 cut(s)	447, 462, 654, 719, 902
Hin1II	CATG	6 cut(s)	119, 218, 271, 339, 375, 509
HincII	GTYRAC	2 cut(s)	322, 567
HindII	GTYRAC	2 cut(s)	322, 567
HinfI	GANTC	8 cut(s)	5, 221, 521, 563, 581, 694, 810, 839
Hpy166II	GTNNAC	5 cut(s)	212, 322, 427, 567, 585
Hpy188I	TCNGA	2 cut(s)	10, 562
Hpy188III	TCNNGA	2 cut(s)	195, 863
Hpy8I	GTNNAC	5 cut(s)	212, 322, 427, 567, 585
HpyAV	CCTTC	1 cut(s)	710
HpyCH4III	ACNGT	1 cut(s)	431
HpyCH4IV	ACGT	2 cut(s)	49, 394
HpyCH4V	TGCA	8 cut(s)	107, 344, 368, 464, 515, 656, 676, 718
HpyF10VI	GCNNNNNNNGC	2 cut(s)	341, 842
HpyF3I	CTNAG	5 cut(s)	525, 561, 640, 774, 846
HpySE526I	ACGT	2 cut(s)	49, 394
Hsp92II	CATG	6 cut(s)	119, 218, 271, 339, 375, 509
LguI	GCTCTTC	1 cut(s)	480
LmnI	GCTCC	1 cut(s)	276
LpnPI	CCDG	6 cut(s)	53, 129, 156, 161, 180, 471
Lsp1109I	GCAGC	5 cut(s)	433, 448, 640, 730, 888
LweI	GCATC	5 cut(s)	355, 364, 377, 502, 663
MabI	ACCWGGT	1 cut(s)	142
MaeI	CTAG	2 cut(s)	92, 863
MaeII	ACGT	2 cut(s)	49, 394
MboII	GAAGA	6 cut(s)	23, 71, 83, 107, 497, 887
MhlI	GDGCHC	1 cut(s)	780
MluCI	AATT	6 cut(s)	153, 182, 190, 575, 764, 825
MlyI	GAGTC	3 cut(s)	230, 572, 590
Mph1103I	ATGCAT	3 cut(s)	346, 370, 517
MseI	TTAA	5 cut(s)	231, 240, 480, 782, 788
MslI	CAYNNNNRTG	2 cut(s)	363, 510
MspA1I	CMGCKG	1 cut(s)	901
MspR9I	CCNGG	1 cut(s)	144
Mva1269I	GAATGC	1 cut(s)	172
MvaI	CCWGG	1 cut(s)	144
MwoI	GCNNNNNNNGC	2 cut(s)	341, 842
NdeI	CATATG	1 cut(s)	346
NlaIII	CATG	6 cut(s)	119, 218, 271, 339, 375, 509
NsiI	ATGCAT	3 cut(s)	346, 370, 517
NspI	RCATGY	3 cut(s)	218, 271, 509
PciI	ACATGT	1 cut(s)	214
PciSI	GCTCTTC	1 cut(s)	480
PctI	GAATGC	1 cut(s)	172
PfeI	GAWTC	5 cut(s)	5, 521, 694, 810, 839
PkrI	GCNGC	5 cut(s)	448, 463, 655, 720, 903
PleI	GAGTC	3 cut(s)	229, 571, 589
PpsI	GAGTC	3 cut(s)	229, 571, 589
PscI	ACATGT	1 cut(s)	214
PsiI	TTATAA	1 cut(s)	23
Psp124BI	GAGCTC	1 cut(s)	780
Psp6I	CCWGG	1 cut(s)	142
PspGI	CCWGG	1 cut(s)	142
PspPI	GGNCC	1 cut(s)	427
PvuII	CAGCTG	1 cut(s)	901
RsaI	GTAC	3 cut(s)	148, 456, 747
RsaNI	GTAC	3 cut(s)	147, 455, 746
RseI	CAYNNNNRTG	2 cut(s)	363, 510
SacI	GAGCTC	1 cut(s)	780
SalI	GTCGAC	1 cut(s)	565
SapI	GCTCTTC	1 cut(s)	480
SaqAI	TTAA	5 cut(s)	231, 240, 480, 782, 788
SatI	GCNGC	5 cut(s)	447, 462, 654, 719, 902
Sau96I	GGNCC	1 cut(s)	427
SchI	GAGTC	3 cut(s)	230, 572, 590
ScrFI	CCNGG	1 cut(s)	144
SduI	GDGCHC	1 cut(s)	780
SexAI	ACCWGGT	1 cut(s)	142
SfaNI	GCATC	5 cut(s)	355, 364, 377, 502, 663
SinI	GGWCC	1 cut(s)	427
SmiMI	CAYNNNNRTG	2 cut(s)	363, 510
Sse9I	AATT	6 cut(s)	153, 182, 190, 575, 764, 825
SspMI	CTAG	2 cut(s)	92, 863
SstI	GAGCTC	1 cut(s)	780
StyD4I	CCNGG	1 cut(s)	142
TaaI	ACNGT	1 cut(s)	431
TaiI	ACGT	2 cut(s)	52, 397
TaqI	TCGA	3 cut(s)	566, 579, 808
TasI	AATT	6 cut(s)	153, 182, 190, 575, 764, 825
TfiI	GAWTC	5 cut(s)	5, 521, 694, 810, 839
Tru1I	TTAA	5 cut(s)	231, 240, 480, 782, 788
Tru9I	TTAA	5 cut(s)	231, 240, 480, 782, 788
TscAI	CASTG	1 cut(s)	556
TseI	GCWGC	5 cut(s)	446, 461, 653, 718, 901
TspDTI	ATGAA	4 cut(s)	414, 498, 777, 880
TspRI	CASTG	1 cut(s)	556
VpaK11BI	GGWCC	1 cut(s)	427
XapI	RAATTY	3 cut(s)	182, 575, 825
XbaI	TCTAGA	1 cut(s)	862
XceI	RCATGY	3 cut(s)	218, 271, 509
XmiI	GTMKAC	2 cut(s)	566, 584
XspI	CTAG	2 cut(s)	92, 863
Zsp2I	ATGCAT	3 cut(s)	346, 370, 517

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.