pycom05g08520
MYB Family

nuclease activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0000261
Physical Location & Seq
Forward (+)
11106509 .. 11108050
1542 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g08520.11

Sequence Viewer

Length: 1041 bp
ATGAGTGGCGTGCATAAGTGTGATTTGATTAAATTTTCTTATATATGCATGTTGACAAAGTGTGATTCGATTATGAAACTTTATTTGAACAAAGATTTTTATCACTTACTATTGATTATATGCTATCTTCTTGTGTATGTAATTGTAGGAATGGAAAGTGAACAAAGTAGTCAACCAAAAGGAGGTAGAAGGGTTTGGAAGCAATATGAAGAAGATGCATTCTTGTCCATACTTGAGGAGGCAATTGTTAAGAATTTAGCTATTAATTTGAAATGTCCTGATGCTACAATAAATAAAGGCACAATAGGGTGGAGTACCACACACCTCACAATTACACATCTTTCTCTTCTCTCTATTAAAATATGCCTACAACATGTTATCAGCACGCTCTTGATGTTGCCATTCTTTTTATGGTTAATTTATTATTTTATTGAATTGTTCTACATGCTATTGATTCAATTTAATTTTTTTGTGTTGAATGTGATACCAACGCTTTTGTTATTTCCTAGAAGATTGGACAATGCCAGAGAGTTTATATTGAAGGTTTTAGATAAGTATTGCATTTCTTTTGGGTTTATAACTGGACATCAAATTCCCATGTTCACCCCAAAACAGCCTCACAGAGTGATCATAAAGCACAATTTGAATAATCACTCTAGACCTTGCTTGTGCATAACTATGTTGGTTTGCCTTACGACCTATTGCCACCCAACCCATTTGAAGTTACAGTTGGTTACTGGGTATGAACCCGACGTTTCAAGGATAACCCTTGCAAACGATCTATTTACTGCTCATTTGCATATTGTCATTTCAATTATAGCCATCCCGTTGTTAGGGAGAGATAAGAACGTCAACGTTCATGTAGAACGACGTGAATTTGCATGGACGTTGCCCACTATGTCTCATCTCAATCCCTCTTTCAGGATGTTGCTCCAGACGTATTCCTCCAATTTAGCTAAAACATCCATAACGGACGTCGAGTCAACATCCTCGAAAGATGTGCTGCCTCTGAATGATGGTTTGGCCTCCTATATTGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4 Myb_DNA-bind_3

Protein Analysis

347

Amino Acids

39.8

Weight (kDa)

8.68

Isoelectric Point (pI)

44.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000261)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18411 FvH4_1g22560 FvH4_1g24290 FvH4_1g24290 FvH4_1g24290 FvH4_1g29434 FvH4_2g04031 FvH4_2g04811 FvH4_2g07610 FvH4_2g09412 FvH4_3g15552 FvH4_3g30720 FvH4_4g05810 FvH4_4g09541 FvH4_4g15171 FvH4_6g09145 FvH4_6g49541 FvH4_7g00320 FvH4_7g11552
malus_domestica MD00G1072400.v1.1 MD01G1188100.v1.1 MD07G1132000.v1.1 MD08G1190700.v1.1 MD10G1011200.v1.1 MD14G1164100.v1.1 MD15G1289200.v1.1 MD15G1289300.v1.1 MD17G1245100.v1.1
prunus_persica Prupe.6G228600_v2.0.a1
pyrus_communis pycom01g07070 pycom02g06890 pycom02g06900 pycom02g13930 pycom04g07470 pycom04g11770 pycom04g21930 pycom05g08520 pycom06g04490 pycom06g09560 pycom07g03750 pycom08g08760 pycom08g13660 pycom09g11520 pycom09g14250 pycom09g14770 pycom10g00720 pycom10g01290 pycom10g10480 pycom10g15700 pycom12420g00130 pycom12g05380 pycom12g08750 pycom13g19010 pycom13g29080 pycom14g06210 pycom14g13680 pycom14g19850 pycom15g22070 pycom15g23440 pycom15g24950 pycom15g25280 pycom16g11100 pycom16g17080 pycom16g26310 pycom17g15650 pycom17g15670 pycom17g20370
rosa_chinensis RchiOBHm_Chr1g0373591 RchiOBHm_Chr2g0105551 RchiOBHm_Chr2g0106711 RchiOBHm_Chr2g0106721 RchiOBHm_Chr7g0219611
rosa_laevigata RLG00000013773 RLG00000017436 RLG00000017533
rosa_multiflora Rmu_co8001842.1_g000001 Rmu_co8158450.1_g000001 Rmu_sc0000516.1_g000067 Rmu_sc0000566.1_g000009 Rmu_sc0000965.1_g000025 Rmu_sc0001718.1_g000001 Rmu_sc0001719.1_g000020 Rmu_sc0001822.1_g000025 Rmu_sc0002219.1_g000003 Rmu_sc0002460.1_g000059 Rmu_sc0002757.1_g000001 Rmu_sc0002860.1_g000001 Rmu_sc0004531.1_g000001 Rmu_sc0005558.1_g000003 Rmu_sc0011218.1_g000001 Rmu_sc0011998.1_g000003 Rmu_sc0015560.1_g000002 Rmu_sc0015560.1_g000003
rosa_roxburghii Rroxscaffold_1G00004200 Rroxscaffold_1G00026570 Rroxscaffold_1G00040370 Rroxscaffold_1G00044120 Rroxscaffold_1G00049590 Rroxscaffold_1G00059030 Rroxscaffold_2G00108440 Rroxscaffold_2G00108850 Rroxscaffold_2G00130680 Rroxscaffold_2G00132980 Rroxscaffold_2G00136860 Rroxscaffold_3G00218610 Rroxscaffold_4G00309940 Rroxscaffold_6G00405560
rosa_rugosa Rorug02G0138000 Rorug02G0138100 Rorug02G0138100 Rorug06G0154000
rosa_samantha Rh1AG121500 Rh1CG116300 Rh2AG189000 Rh2AG509600 Rh2BG200200 Rh2CG194100 Rh2DG195300 Rh5AG114400 Rh5DG488800
rosa_wichuraiana Rw0G022020 Rw1G023650 Rw1G026380 Rw1G034750 Rw1G040770 Rw2G014870 Rw2G016560 Rw4G031190 Rw5G026570 Rw6G003020 Rw6G012060 Rw7G014300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 578
AatII GACGTC 1 cut(s) 978
AclI AACGTT 1 cut(s) 855
AcsI RAATTY 4 cut(s) 32, 253, 591, 875
AcyI GRCGYC 1 cut(s) 975
AdeI CACNNNGTG 1 cut(s) 625
AfaI GTAC 1 cut(s) 316
AfiI CCNNNNNNNGG 3 cut(s) 182, 833, 921
AflIII ACRYGT 1 cut(s) 373
AhdI GACNNNNNGTC 1 cut(s) 979
AjiI CACGTC 1 cut(s) 872
AjuI GAANNNNNNNTTGG 4 cut(s) 713, 745, 1004, 1036
AluBI AGCT 2 cut(s) 260, 956
AluI AGCT 2 cut(s) 260, 956
Alw26I GTCTC 1 cut(s) 906
AoxI GGCC 1 cut(s) 1023
ApeKI GCWGC 1 cut(s) 1003
ApoI RAATTY 4 cut(s) 32, 253, 591, 875
AseI ATTAAT 1 cut(s) 264
AsuHPI GGTGA 1 cut(s) 595
BbvI GCAGC 1 cut(s) 990
BccI CCATC 2 cut(s) 830, 1010
BcgI CGANNNNNNTGC 2 cut(s) 982, 1016
BclI TGATCA 1 cut(s) 627
BcoDI GTCTC 1 cut(s) 906
BfaI CTAG 2 cut(s) 507, 657
BisI GCNGC 1 cut(s) 1004
BlsI GCNGC 1 cut(s) 1005
BmeRI GACNNNNNGTC 1 cut(s) 979
BmgBI CACGTC 1 cut(s) 872
BmrI ACTGGG 1 cut(s) 747
BmsI GCATC 2 cut(s) 205, 271
BmuI ACTGGG 1 cut(s) 747
BpmI CTGGAG 1 cut(s) 917
BpuEI CTTGAG 1 cut(s) 254
BsaBI GATNNNNATC 1 cut(s) 99
BsaHI GRCGYC 1 cut(s) 975
Bsc4I CCNNNNNNNGG 3 cut(s) 182, 833, 921
Bse1I ACTGG 2 cut(s) 586, 742
Bse8I GATNNNNATC 1 cut(s) 99
BseGI GGATG 4 cut(s) 822, 930, 962, 986
BseJI GATNNNNATC 1 cut(s) 99
BseLI CCNNNNNNNGG 3 cut(s) 182, 833, 921
BseNI ACTGG 2 cut(s) 586, 742
BseRI GAGGAG 1 cut(s) 251
BseXI GCAGC 1 cut(s) 990
BshFI GGCC 1 cut(s) 1025
BslI CCNNNNNNNGG 3 cut(s) 182, 833, 921
BsmAI GTCTC 1 cut(s) 906
BsmI GAATGC 1 cut(s) 218
BsnI GGCC 1 cut(s) 1025
Bsp143I GATC 2 cut(s) 627, 778
BspANI GGCC 1 cut(s) 1025
BsrI ACTGG 2 cut(s) 586, 742
BssMI GATC 2 cut(s) 627, 778
BssNI GRCGYC 1 cut(s) 975
Bst4CI ACNGT 1 cut(s) 729
Bst6I CTCTTC 1 cut(s) 351
BstACI GRCGYC 1 cut(s) 975
BstC8I GCNNGC 2 cut(s) 11, 386
BstENI CCTNNNNNAGG 1 cut(s) 919
BstF5I GGATG 4 cut(s) 822, 930, 962, 986
BstKTI GATC 2 cut(s) 630, 781
BstMAI GTCTC 1 cut(s) 906
BstMBI GATC 2 cut(s) 627, 778
BstNSI RCATGY 3 cut(s) 52, 377, 448
BstV1I GCAGC 1 cut(s) 990
BsuRI GGCC 1 cut(s) 1025
BtrI CACGTC 1 cut(s) 872
BtsCI GGATG 4 cut(s) 822, 930, 962, 986
Cac8I GCNNGC 2 cut(s) 11, 386
Csp6I GTAC 1 cut(s) 315
CviAII CATG 6 cut(s) 49, 374, 445, 598, 860, 882
CviJI RGCY 5 cut(s) 260, 616, 821, 956, 1025
CviKI_1 RGCY 5 cut(s) 260, 616, 821, 956, 1025
CviQI GTAC 1 cut(s) 315
DpnI GATC 2 cut(s) 629, 780
DpnII GATC 2 cut(s) 627, 778
DraIII CACNNNGTG 1 cut(s) 625
DriI GACNNNNNGTC 1 cut(s) 979
Eam1104I CTCTTC 1 cut(s) 351
Eam1105I GACNNNNNGTC 1 cut(s) 979
EarI CTCTTC 1 cut(s) 351
EcoNI CCTNNNNNAGG 1 cut(s) 919
EcoT22I ATGCAT 2 cut(s) 50, 220
FaeI CATG 6 cut(s) 52, 377, 448, 601, 863, 885
FatI CATG 6 cut(s) 48, 373, 444, 597, 859, 881
FbaI TGATCA 1 cut(s) 627
Fnu4HI GCNGC 1 cut(s) 1004
FokI GGATG 4 cut(s) 809, 937, 949, 973
Fsp4HI GCNGC 1 cut(s) 1004
FspBI CTAG 2 cut(s) 507, 657
GluI GCNGC 1 cut(s) 1004
GsuI CTGGAG 1 cut(s) 917
HaeIII GGCC 1 cut(s) 1025
Hin1I GRCGYC 1 cut(s) 975
Hin1II CATG 6 cut(s) 52, 377, 448, 601, 863, 885
HincII GTYRAC 4 cut(s) 54, 173, 853, 984
HindII GTYRAC 4 cut(s) 54, 173, 853, 984
HinfI GANTC 3 cut(s) 65, 454, 980
HphI GGTGA 1 cut(s) 595
Hpy166II GTNNAC 6 cut(s) 54, 161, 173, 603, 853, 984
Hpy188I TCNGA 1 cut(s) 1011
Hpy188III TCNNGA 5 cut(s) 278, 391, 657, 922, 934
Hpy8I GTNNAC 6 cut(s) 54, 161, 173, 603, 853, 984
Hpy99I CGWCG 3 cut(s) 755, 873, 980
HpyAV CCTTC 2 cut(s) 183, 535
HpyCH4III ACNGT 1 cut(s) 729
HpyCH4IV ACGT 7 cut(s) 753, 849, 855, 871, 887, 938, 975
HpyCH4V TGCA 8 cut(s) 13, 48, 218, 561, 672, 773, 799, 881
HpySE526I ACGT 7 cut(s) 753, 849, 855, 871, 887, 938, 975
Hsp92I GRCGYC 1 cut(s) 975
Hsp92II CATG 6 cut(s) 52, 377, 448, 601, 863, 885
Ksp22I TGATCA 1 cut(s) 627
Kzo9I GATC 2 cut(s) 627, 778
LmnI GCTCC 1 cut(s) 936
LpnPI CCDG 6 cut(s) 291, 538, 567, 723, 907, 947
Lsp1109I GCAGC 1 cut(s) 990
LweI GCATC 2 cut(s) 205, 271
MaeI CTAG 2 cut(s) 507, 657
MaeII ACGT 7 cut(s) 753, 849, 855, 871, 887, 938, 975
MaeIII GTNAC 2 cut(s) 723, 733
MalI GATC 2 cut(s) 629, 780
MboI GATC 2 cut(s) 627, 778
MboII GAAGA 5 cut(s) 119, 221, 224, 338, 522
MfeI CAATTG 1 cut(s) 243
MlyI GAGTC 1 cut(s) 989
Mph1103I ATGCAT 2 cut(s) 50, 220
MseI TTAA 6 cut(s) 30, 249, 264, 357, 416, 462
MslI CAYNNNNRTG 2 cut(s) 18, 677
MunI CAATTG 1 cut(s) 243
Mva1269I GAATGC 1 cut(s) 218
NdeII GATC 2 cut(s) 627, 778
NlaIII CATG 6 cut(s) 52, 377, 448, 601, 863, 885
NsiI ATGCAT 2 cut(s) 50, 220
NspI RCATGY 3 cut(s) 52, 377, 448
PciI ACATGT 1 cut(s) 373
PctI GAATGC 1 cut(s) 218
PfeI GAWTC 2 cut(s) 65, 454
PkrI GCNGC 1 cut(s) 1005
PleI GAGTC 1 cut(s) 988
PpsI GAGTC 1 cut(s) 988
PscI ACATGT 1 cut(s) 373
PshBI ATTAAT 1 cut(s) 264
PsiI TTATAA 1 cut(s) 578
Psp1406I AACGTT 1 cut(s) 855
RsaI GTAC 1 cut(s) 316
RsaNI GTAC 1 cut(s) 315
RseI CAYNNNNRTG 2 cut(s) 18, 677
SaqAI TTAA 6 cut(s) 30, 249, 264, 357, 416, 462
SatI GCNGC 1 cut(s) 1004
Sau3AI GATC 2 cut(s) 627, 778
SchI GAGTC 1 cut(s) 989
SfaNI GCATC 2 cut(s) 205, 271
SmiMI CAYNNNNRTG 2 cut(s) 18, 677
SmlI CTYRAG 1 cut(s) 233
SmoI CTYRAG 1 cut(s) 233
SspMI CTAG 2 cut(s) 507, 657
TaaI ACNGT 1 cut(s) 729
TaiI ACGT 7 cut(s) 756, 852, 858, 874, 890, 941, 978
TaqI TCGA 3 cut(s) 68, 978, 992
TfiI GAWTC 2 cut(s) 65, 454
Tru1I TTAA 6 cut(s) 30, 249, 264, 357, 416, 462
Tru9I TTAA 6 cut(s) 30, 249, 264, 357, 416, 462
TseI GCWGC 1 cut(s) 1003
TspDTI ATGAA 4 cut(s) 89, 222, 759, 848
TspGWI ACGGA 1 cut(s) 986
VspI ATTAAT 1 cut(s) 264
XagI CCTNNNNNAGG 1 cut(s) 919
XapI RAATTY 4 cut(s) 32, 253, 591, 875
XbaI TCTAGA 1 cut(s) 656
XceI RCATGY 3 cut(s) 52, 377, 448
XcmI CCANNNNNNNNNTGG 1 cut(s) 408
XspI CTAG 2 cut(s) 507, 657
ZraI GACGTC 1 cut(s) 976
Zsp2I ATGCAT 2 cut(s) 50, 220
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.