Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0000261

Physical Location & Seq

Genomic Coordinates Reverse (-)

76805370 .. 76809073

Gene Structure 3704 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG488800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGTTGATGTTTGGGATGGATTCTGAAGATAATAGTCTTATGAGTGATAGAAAAAAGAGAGAAAGACGTGTATGGACAGATGAGCAAGAAGATACTCTTCTAAACATCCTAGAAGAACTAGTTGCAAATGGTCATGCTTGTAAAAATGGCACATTCAAACCTGAGGAAGTTAATGAAGAGCTTGAAAACCAAGAGCATGCTGATGCATTTGATTCTAAGGTAGAAGCAGACCAACTATCCACTGCTAAATCTGAGTCCACTTCTAAATCCGAGTCTACAAGCACGAGTAGGAGGAGGAAAAGAGAGGATGATGATAACATAGTTCGTGGCTTAGACAAGTTTGCTGCAACATTCAAAGAAGTGATGCAGACTTCAAATGAGCAGATCCGCCTTCTTGTTGAATACTTGCAGCCAAAAGGTAGCAAAAAAGATGAGGTACGAGCTAATAAAGATGAATTGTGGGCTGAGCTCTTAAAGTTAAACCTTTCAACAACAAATCGAATCAAAGCATTGAAAATTCTAATGGCTGATTCTGCTGAGCTTTTCTTGGCTCTAGATAAAGAGGAAGAAAAGATGGAGTTCATCACACAGCTGCTTCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000123 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006325 GO:0006338 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0031248 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0051276 GO:0070013 GO:0071704 GO:0071840 GO:1901564 GO:1902493 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MRG Tudor-knot

Protein Analysis

200

Amino Acids

23.05

Weight (kDa)

4.84

Isoelectric Point (pI)

51.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000261)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g18411 FvH4_1g22560 FvH4_1g24290 FvH4_1g24290 FvH4_1g24290 FvH4_1g29434 FvH4_2g04031 FvH4_2g04811 FvH4_2g07610 FvH4_2g09412 FvH4_3g15552 FvH4_3g30720 FvH4_4g05810 FvH4_4g09541 FvH4_4g15171 FvH4_6g09145 FvH4_6g49541 FvH4_7g00320 FvH4_7g11552
malus_domestica	MD00G1072400.v1.1 MD01G1188100.v1.1 MD07G1132000.v1.1 MD08G1190700.v1.1 MD10G1011200.v1.1 MD14G1164100.v1.1 MD15G1289200.v1.1 MD15G1289300.v1.1 MD17G1245100.v1.1
prunus_persica	Prupe.6G228600_v2.0.a1
pyrus_communis	pycom01g07070 pycom02g06890 pycom02g06900 pycom02g13930 pycom04g07470 pycom04g11770 pycom04g21930 pycom05g08520 pycom06g04490 pycom06g09560 pycom07g03750 pycom08g08760 pycom08g13660 pycom09g11520 pycom09g14250 pycom09g14770 pycom10g00720 pycom10g01290 pycom10g10480 pycom10g15700 pycom12420g00130 pycom12g05380 pycom12g08750 pycom13g19010 pycom13g29080 pycom14g06210 pycom14g13680 pycom14g19850 pycom15g22070 pycom15g23440 pycom15g24950 pycom15g25280 pycom16g11100 pycom16g17080 pycom16g26310 pycom17g15650 pycom17g15670 pycom17g20370
rosa_chinensis	RchiOBHm_Chr1g0373591 RchiOBHm_Chr2g0105551 RchiOBHm_Chr2g0106711 RchiOBHm_Chr2g0106721 RchiOBHm_Chr7g0219611
rosa_laevigata	RLG00000013773 RLG00000017436 RLG00000017533
rosa_multiflora	Rmu_co8001842.1_g000001 Rmu_co8158450.1_g000001 Rmu_sc0000516.1_g000067 Rmu_sc0000566.1_g000009 Rmu_sc0000965.1_g000025 Rmu_sc0001718.1_g000001 Rmu_sc0001719.1_g000020 Rmu_sc0001822.1_g000025 Rmu_sc0002219.1_g000003 Rmu_sc0002460.1_g000059 Rmu_sc0002757.1_g000001 Rmu_sc0002860.1_g000001 Rmu_sc0004531.1_g000001 Rmu_sc0005558.1_g000003 Rmu_sc0011218.1_g000001 Rmu_sc0011998.1_g000003 Rmu_sc0015560.1_g000002 Rmu_sc0015560.1_g000003
rosa_roxburghii	Rroxscaffold_1G00004200 Rroxscaffold_1G00026570 Rroxscaffold_1G00040370 Rroxscaffold_1G00044120 Rroxscaffold_1G00049590 Rroxscaffold_1G00059030 Rroxscaffold_2G00108440 Rroxscaffold_2G00108850 Rroxscaffold_2G00130680 Rroxscaffold_2G00132980 Rroxscaffold_2G00136860 Rroxscaffold_3G00218610 Rroxscaffold_4G00309940 Rroxscaffold_6G00405560
rosa_rugosa	Rorug02G0138000 Rorug02G0138100 Rorug02G0138100 Rorug06G0154000
rosa_samantha	Rh1AG121500 Rh1CG116300 Rh2AG189000 Rh2AG509600 Rh2BG200200 Rh2CG194100 Rh2DG195300 Rh5AG114400 Rh5DG488800
rosa_wichuraiana	Rw0G022020 Rw1G023650 Rw1G026380 Rw1G034750 Rw1G040770 Rw2G014870 Rw2G016560 Rw4G031190 Rw5G026570 Rw6G003020 Rw6G012060 Rw7G014300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	275
AciI	CCGC	1 cut(s)	388
AclWI	GGATC	1 cut(s)	379
AcsI	RAATTY	1 cut(s)	516
AcuI	CTGAAG	1 cut(s)	45
AfaI	GTAC	1 cut(s)	438
AflIII	ACRYGT	1 cut(s)	67
AgsI	TTSAA	7 cut(s)	157, 185, 355, 375, 401, 489, 514
AhlI	ACTAGT	1 cut(s)	118
AjiI	CACGTC	1 cut(s)	68
AluBI	AGCT	5 cut(s)	181, 443, 469, 541, 592
AluI	AGCT	5 cut(s)	181, 443, 469, 541, 592
Alw21I	GWGCWC	1 cut(s)	471
AlwI	GGATC	1 cut(s)	379
ApeKI	GCWGC	3 cut(s)	344, 409, 592
ApoI	RAATTY	1 cut(s)	516
AxyI	CCTNAGG	1 cut(s)	162
BanII	GRGCYC	1 cut(s)	471
BauI	CACGAG	1 cut(s)	283
Bbv12I	GWGCWC	1 cut(s)	471
BbvI	GCAGC	3 cut(s)	331, 421, 579
BccI	CCATC	2 cut(s)	10, 568
BcuI	ACTAGT	1 cut(s)	118
BfaI	CTAG	3 cut(s)	110, 119, 554
BisI	GCNGC	3 cut(s)	345, 410, 593
BlpI	GCTNAGC	2 cut(s)	465, 537
BlsI	GCNGC	3 cut(s)	346, 411, 594
BmgBI	CACGTC	1 cut(s)	68
BmsI	GCATC	2 cut(s)	193, 354
Bpu1102I	GCTNAGC	2 cut(s)	465, 537
Bse21I	CCTNAGG	1 cut(s)	162
BseGI	GGATG	3 cut(s)	21, 105, 313
BseMII	CTCAG	4 cut(s)	153, 243, 456, 528
BseRI	GAGGAG	1 cut(s)	307
BseXI	GCAGC	3 cut(s)	331, 421, 579
BsiHKAI	GWGCWC	1 cut(s)	471
Bsp1286I	GDGCHC	1 cut(s)	471
Bsp143I	GATC	1 cut(s)	384
Bsp1720I	GCTNAGC	2 cut(s)	465, 537
BspACI	CCGC	1 cut(s)	388
BspCNI	CTCAG	4 cut(s)	154, 244, 457, 529
BspPI	GGATC	1 cut(s)	379
BspQI	GCTCTTC	1 cut(s)	171
BssMI	GATC	1 cut(s)	384
BssSI	CACGAG	1 cut(s)	283
Bst2BI	CACGAG	1 cut(s)	283
Bst6I	CTCTTC	2 cut(s)	102, 171
BstC8I	GCNNGC	1 cut(s)	198
BstDEI	CTNAG	6 cut(s)	162, 216, 252, 331, 465, 537
BstF5I	GGATG	3 cut(s)	21, 105, 313
BstKTI	GATC	1 cut(s)	387
BstMBI	GATC	1 cut(s)	384
BstMWI	GCNNNNNNNGC	1 cut(s)	533
BstNSI	RCATGY	1 cut(s)	200
BstV1I	GCAGC	3 cut(s)	331, 421, 579
BstX2I	RGATCY	1 cut(s)	384
BstYI	RGATCY	1 cut(s)	384
Bsu36I	CCTNAGG	1 cut(s)	162
BtrI	CACGTC	1 cut(s)	68
BtsCI	GGATG	3 cut(s)	21, 105, 313
BtsI	GCAGTG	1 cut(s)	240
BtsIMutI	CAGTG	1 cut(s)	240
Cac8I	GCNNGC	1 cut(s)	198
Csp6I	GTAC	1 cut(s)	437
CviAII	CATG	2 cut(s)	134, 197
CviQI	GTAC	1 cut(s)	437
DdeI	CTNAG	6 cut(s)	162, 216, 252, 331, 465, 537
DpnI	GATC	1 cut(s)	386
DpnII	GATC	1 cut(s)	384
Eam1104I	CTCTTC	2 cut(s)	102, 171
EarI	CTCTTC	2 cut(s)	102, 171
EciI	GGCGGA	1 cut(s)	377
Ecl136II	GAGCTC	1 cut(s)	469
Eco24I	GRGCYC	1 cut(s)	471
Eco53kI	GAGCTC	1 cut(s)	469
Eco57I	CTGAAG	1 cut(s)	45
Eco81I	CCTNAGG	1 cut(s)	162
EcoICRI	GAGCTC	1 cut(s)	469
EcoT22I	ATGCAT	1 cut(s)	208
EcoT38I	GRGCYC	1 cut(s)	471
FaeI	CATG	2 cut(s)	137, 200
FaiI	YATR	5 cut(s)	41, 73, 135, 198, 320
FalI	AAGNNNNNCTT	2 cut(s)	81, 113
FatI	CATG	2 cut(s)	133, 196
FblI	GTMKAC	1 cut(s)	275
Fnu4HI	GCNGC	3 cut(s)	345, 410, 593
FokI	GGATG	3 cut(s)	28, 92, 320
FriOI	GRGCYC	1 cut(s)	471
Fsp4HI	GCNGC	3 cut(s)	345, 410, 593
FspBI	CTAG	3 cut(s)	110, 119, 554
GluI	GCNGC	3 cut(s)	345, 410, 593
Hin1II	CATG	2 cut(s)	137, 200
HinfI	GANTC	6 cut(s)	20, 212, 254, 272, 501, 530
Hpy166II	GTNNAC	2 cut(s)	258, 276
Hpy188I	TCNGA	3 cut(s)	25, 253, 271
Hpy188III	TCNNGA	1 cut(s)	554
Hpy8I	GTNNAC	2 cut(s)	258, 276
HpyAV	CCTTC	1 cut(s)	401
HpyCH4IV	ACGT	1 cut(s)	67
HpyCH4V	TGCA	5 cut(s)	125, 206, 347, 367, 409
HpyF10VI	GCNNNNNNNGC	1 cut(s)	533
HpyF3I	CTNAG	6 cut(s)	162, 216, 252, 331, 465, 537
HpySE526I	ACGT	1 cut(s)	67
Hsp92II	CATG	2 cut(s)	137, 200
Kzo9I	GATC	1 cut(s)	384
LguI	GCTCTTC	1 cut(s)	171
LpnPI	CCDG	1 cut(s)	174
Lsp1109I	GCAGC	3 cut(s)	331, 421, 579
LweI	GCATC	2 cut(s)	193, 354
MaeI	CTAG	3 cut(s)	110, 119, 554
MaeII	ACGT	1 cut(s)	67
MalI	GATC	1 cut(s)	386
MboI	GATC	1 cut(s)	384
MboII	GAAGA	6 cut(s)	38, 89, 101, 125, 188, 578
MflI	RGATCY	1 cut(s)	384
MhlI	GDGCHC	1 cut(s)	471
MluCI	AATT	2 cut(s)	455, 516
MlyI	GAGTC	2 cut(s)	263, 281
MnlI	CCTC	6 cut(s)	157, 285, 288, 298, 427, 556
Mph1103I	ATGCAT	1 cut(s)	208
MseI	TTAA	3 cut(s)	171, 473, 479
MslI	CAYNNNNRTG	1 cut(s)	201
MspA1I	CMGCKG	1 cut(s)	592
MwoI	GCNNNNNNNGC	1 cut(s)	533
NdeII	GATC	1 cut(s)	384
NlaIII	CATG	2 cut(s)	137, 200
NsiI	ATGCAT	1 cut(s)	208
NspI	RCATGY	1 cut(s)	200
PaeI	GCATGC	1 cut(s)	200
PciSI	GCTCTTC	1 cut(s)	171
PfeI	GAWTC	4 cut(s)	20, 212, 501, 530
PkrI	GCNGC	3 cut(s)	346, 411, 594
PleI	GAGTC	2 cut(s)	262, 280
PpsI	GAGTC	2 cut(s)	262, 280
Psp124BI	GAGCTC	1 cut(s)	471
PsuI	RGATCY	1 cut(s)	384
PvuII	CAGCTG	1 cut(s)	592
RsaI	GTAC	1 cut(s)	438
RsaNI	GTAC	1 cut(s)	437
RseI	CAYNNNNRTG	1 cut(s)	201
SacI	GAGCTC	1 cut(s)	471
SapI	GCTCTTC	1 cut(s)	171
SaqAI	TTAA	3 cut(s)	171, 473, 479
SatI	GCNGC	3 cut(s)	345, 410, 593
Sau3AI	GATC	1 cut(s)	384
SchI	GAGTC	2 cut(s)	263, 281
SduI	GDGCHC	1 cut(s)	471
SfaNI	GCATC	2 cut(s)	193, 354
SmiMI	CAYNNNNRTG	1 cut(s)	201
SpeI	ACTAGT	1 cut(s)	118
SphI	GCATGC	1 cut(s)	200
Sse9I	AATT	2 cut(s)	455, 516
SsiI	CCGC	1 cut(s)	388
SspMI	CTAG	3 cut(s)	110, 119, 554
SstI	GAGCTC	1 cut(s)	471
TaiI	ACGT	1 cut(s)	70
TaqI	TCGA	1 cut(s)	499
TasI	AATT	2 cut(s)	455, 516
TfiI	GAWTC	4 cut(s)	20, 212, 501, 530
Tru1I	TTAA	3 cut(s)	171, 473, 479
Tru9I	TTAA	3 cut(s)	171, 473, 479
TscAI	CASTG	1 cut(s)	247
TseI	GCWGC	3 cut(s)	344, 409, 592
TspDTI	ATGAA	3 cut(s)	189, 468, 571
TspRI	CASTG	1 cut(s)	247
XapI	RAATTY	1 cut(s)	516
XbaI	TCTAGA	1 cut(s)	553
XceI	RCATGY	1 cut(s)	200
XmiI	GTMKAC	1 cut(s)	275
XspI	CTAG	3 cut(s)	110, 119, 554
Zsp2I	ATGCAT	1 cut(s)	208

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.