FvH4_6g49541

MRG

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
37103465 .. 37105325
1861 bp
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UTR
Exon/CDS
Intron
FvH4_6g49541.t1

Sequence Viewer

Length: 366 bp
ATGAAAAAATTCGCCTTCTTGTTGATTGCTTGCAACCAAAGCAAGAAAGATGAGAGTGCATTTGGATGGAATTATGTTAGGAAGTGTGTTGAGGTTGACAATTATGAGACATGGTATGCATATGTTAGGCATCATAGTGATGTTGATGGATGGATGGGCAAGTCATTCCCACGTTATGAATCATTTGCTTCAACATTTGAAGTTGACCGTGTTATTGGTAAAGTTGCTAAAGTACCAACTGCAATTGTAGAAGAAGTCGATGAAGAGCTTGAAAACCAAGAACATATTGATGCATTTTATTCGAAAGTAGAAGCAGACCAACTATTCACTGTTAAATCTGAGTCCAATATTATCCGAGTCTACTAG

Protein Analysis

122

Amino Acids

14.16

Weight (kDa)

5.06

Isoelectric Point (pI)

35.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000261)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18411 FvH4_1g22560 FvH4_1g24290 FvH4_1g24290 FvH4_1g24290 FvH4_1g29434 FvH4_2g04031 FvH4_2g04811 FvH4_2g07610 FvH4_2g09412 FvH4_3g15552 FvH4_3g30720 FvH4_4g05810 FvH4_4g09541 FvH4_4g15171 FvH4_6g09145 FvH4_6g49541 FvH4_7g00320 FvH4_7g11552
malus_domestica MD00G1072400.v1.1 MD01G1188100.v1.1 MD07G1132000.v1.1 MD08G1190700.v1.1 MD10G1011200.v1.1 MD14G1164100.v1.1 MD15G1289200.v1.1 MD15G1289300.v1.1 MD17G1245100.v1.1
prunus_persica Prupe.6G228600_v2.0.a1
pyrus_communis pycom01g07070 pycom02g06890 pycom02g06900 pycom02g13930 pycom04g07470 pycom04g11770 pycom04g21930 pycom05g08520 pycom06g04490 pycom06g09560 pycom07g03750 pycom08g08760 pycom08g13660 pycom09g11520 pycom09g14250 pycom09g14770 pycom10g00720 pycom10g01290 pycom10g10480 pycom10g15700 pycom12420g00130 pycom12g05380 pycom12g08750 pycom13g19010 pycom13g29080 pycom14g06210 pycom14g13680 pycom14g19850 pycom15g22070 pycom15g23440 pycom15g24950 pycom15g25280 pycom16g11100 pycom16g17080 pycom16g26310 pycom17g15650 pycom17g15670 pycom17g20370
rosa_chinensis RchiOBHm_Chr1g0373591 RchiOBHm_Chr2g0105551 RchiOBHm_Chr2g0106711 RchiOBHm_Chr2g0106721 RchiOBHm_Chr7g0219611
rosa_laevigata RLG00000013773 RLG00000017436 RLG00000017533
rosa_multiflora Rmu_co8001842.1_g000001 Rmu_co8158450.1_g000001 Rmu_sc0000516.1_g000067 Rmu_sc0000566.1_g000009 Rmu_sc0000965.1_g000025 Rmu_sc0001718.1_g000001 Rmu_sc0001719.1_g000020 Rmu_sc0001822.1_g000025 Rmu_sc0002219.1_g000003 Rmu_sc0002460.1_g000059 Rmu_sc0002757.1_g000001 Rmu_sc0002860.1_g000001 Rmu_sc0004531.1_g000001 Rmu_sc0005558.1_g000003 Rmu_sc0011218.1_g000001 Rmu_sc0011998.1_g000003 Rmu_sc0015560.1_g000002 Rmu_sc0015560.1_g000003
rosa_roxburghii Rroxscaffold_1G00004200 Rroxscaffold_1G00026570 Rroxscaffold_1G00040370 Rroxscaffold_1G00044120 Rroxscaffold_1G00049590 Rroxscaffold_1G00059030 Rroxscaffold_2G00108440 Rroxscaffold_2G00108850 Rroxscaffold_2G00130680 Rroxscaffold_2G00132980 Rroxscaffold_2G00136860 Rroxscaffold_3G00218610 Rroxscaffold_4G00309940 Rroxscaffold_6G00405560
rosa_rugosa Rorug02G0138000 Rorug02G0138100 Rorug02G0138100 Rorug06G0154000
rosa_samantha Rh1AG121500 Rh1CG116300 Rh2AG189000 Rh2AG509600 Rh2BG200200 Rh2CG194100 Rh2DG195300 Rh5AG114400 Rh5DG488800
rosa_wichuraiana Rw0G022020 Rw1G023650 Rw1G026380 Rw1G034750 Rw1G040770 Rw2G014870 Rw2G016560 Rw4G031190 Rw5G026570 Rw6G003020 Rw6G012060 Rw7G014300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 360
AcsI RAATTY 1 cut(s) 8
AfaI GTAC 1 cut(s) 234
AgsI TTSAA 3 cut(s) 192, 200, 272
AluBI AGCT 1 cut(s) 268
AluI AGCT 1 cut(s) 268
Alw26I GTCTC 1 cut(s) 101
ApoI RAATTY 1 cut(s) 8
Asp700I GAANNNNTTC 1 cut(s) 8
AsuII TTCGAA 1 cut(s) 302
BccI CCATC 4 cut(s) 60, 140, 144, 148
BcgI CGANNNNNNTGC 2 cut(s) 282, 316
BcoDI GTCTC 1 cut(s) 101
BfaI CTAG 1 cut(s) 364
BmsI GCATC 2 cut(s) 139, 280
Bpu14I TTCGAA 1 cut(s) 302
BseGI GGATG 3 cut(s) 71, 155, 159
BseMII CTCAG 1 cut(s) 330
BsmAI GTCTC 1 cut(s) 101
Bsp119I TTCGAA 1 cut(s) 302
BspCNI CTCAG 1 cut(s) 331
BspQI GCTCTTC 1 cut(s) 258
BspT104I TTCGAA 1 cut(s) 302
Bst4CI ACNGT 2 cut(s) 209, 331
Bst6I CTCTTC 1 cut(s) 258
BstBI TTCGAA 1 cut(s) 302
BstC8I GCNNGC 1 cut(s) 31
BstDEI CTNAG 1 cut(s) 339
BstF5I GGATG 3 cut(s) 71, 155, 159
BstMAI GTCTC 1 cut(s) 101
BstMWI GCNNNNNNNGC 1 cut(s) 39
BtsCI GGATG 3 cut(s) 71, 155, 159
BtsIMutI CAGTG 1 cut(s) 327
Cac8I GCNNGC 1 cut(s) 31
Csp6I GTAC 1 cut(s) 233
CviAII CATG 1 cut(s) 111
CviJI RGCY 1 cut(s) 268
CviKI_1 RGCY 1 cut(s) 268
CviQI GTAC 1 cut(s) 233
DdeI CTNAG 1 cut(s) 339
Eam1104I CTCTTC 1 cut(s) 258
EarI CTCTTC 1 cut(s) 258
EcoT22I ATGCAT 2 cut(s) 121, 295
FaeI CATG 1 cut(s) 114
FaiI YATR 9 cut(s) 75, 105, 112, 117, 121, 123, 135, 177, 285
FatI CATG 1 cut(s) 110
FauNDI CATATG 1 cut(s) 121
FblI GTMKAC 1 cut(s) 360
FokI GGATG 3 cut(s) 78, 162, 166
FspBI CTAG 1 cut(s) 364
Hin1II CATG 1 cut(s) 114
HincII GTYRAC 2 cut(s) 97, 205
HindII GTYRAC 2 cut(s) 97, 205
HinfI GANTC 3 cut(s) 179, 341, 357
Hpy166II GTNNAC 3 cut(s) 97, 205, 361
Hpy188I TCNGA 2 cut(s) 340, 356
Hpy8I GTNNAC 3 cut(s) 97, 205, 361
HpyAV CCTTC 1 cut(s) 25
HpyCH4III ACNGT 2 cut(s) 209, 331
HpyCH4IV ACGT 1 cut(s) 172
HpyCH4V TGCA 5 cut(s) 33, 59, 119, 242, 293
HpyF10VI GCNNNNNNNGC 1 cut(s) 39
HpyF3I CTNAG 1 cut(s) 339
HpySE526I ACGT 1 cut(s) 172
Hsp92II CATG 1 cut(s) 114
LguI GCTCTTC 1 cut(s) 258
LweI GCATC 2 cut(s) 139, 280
MaeI CTAG 1 cut(s) 364
MaeII ACGT 1 cut(s) 172
MboII GAAGA 2 cut(s) 263, 275
MfeI CAATTG 1 cut(s) 243
MluCI AATT 4 cut(s) 8, 70, 100, 243
MlyI GAGTC 2 cut(s) 350, 366
MnlI CCTC 1 cut(s) 85
Mph1103I ATGCAT 2 cut(s) 121, 295
MroXI GAANNNNTTC 1 cut(s) 8
MseI TTAA 1 cut(s) 333
MslI CAYNNNNRTG 4 cut(s) 64, 135, 138, 288
MunI CAATTG 1 cut(s) 243
MwoI GCNNNNNNNGC 1 cut(s) 39
NdeI CATATG 1 cut(s) 121
NlaIII CATG 1 cut(s) 114
NsiI ATGCAT 2 cut(s) 121, 295
NspV TTCGAA 1 cut(s) 302
PciSI GCTCTTC 1 cut(s) 258
PdmI GAANNNNTTC 1 cut(s) 8
PfeI GAWTC 1 cut(s) 179
PleI GAGTC 2 cut(s) 349, 365
PpsI GAGTC 2 cut(s) 349, 365
RsaI GTAC 1 cut(s) 234
RsaNI GTAC 1 cut(s) 233
RseI CAYNNNNRTG 4 cut(s) 64, 135, 138, 288
SapI GCTCTTC 1 cut(s) 258
SaqAI TTAA 1 cut(s) 333
SchI GAGTC 2 cut(s) 350, 366
SetI ASST 3 cut(s) 96, 175, 270
SfaNI GCATC 2 cut(s) 139, 280
SfuI TTCGAA 1 cut(s) 302
SgeI CNNG 9 cut(s) 31, 42, 55, 123, 172, 183, 221, 281, 290
SmiMI CAYNNNNRTG 4 cut(s) 64, 135, 138, 288
Sse9I AATT 4 cut(s) 8, 70, 100, 243
SspI AATATT 1 cut(s) 349
SspMI CTAG 1 cut(s) 364
TaaI ACNGT 2 cut(s) 209, 331
TaiI ACGT 1 cut(s) 175
TaqI TCGA 2 cut(s) 258, 302
TasI AATT 4 cut(s) 8, 70, 100, 243
TfiI GAWTC 1 cut(s) 179
Tru1I TTAA 1 cut(s) 333
Tru9I TTAA 1 cut(s) 333
TscAI CASTG 1 cut(s) 334
TspDTI ATGAA 3 cut(s) 17, 192, 276
TspRI CASTG 1 cut(s) 334
XapI RAATTY 1 cut(s) 8
XmiI GTMKAC 1 cut(s) 360
XmnI GAANNNNTTC 1 cut(s) 8
XspI CTAG 1 cut(s) 364
Zsp2I ATGCAT 2 cut(s) 121, 295
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.