Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0000261

Physical Location & Seq

Genomic Coordinates Forward (+)

14255617 .. 14256144

Gene Structure 528 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1072400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 156 bp

ATGGATAAAGACAATATTTTGAATGCTACTCAAGAGCCAAAAGGAAGAAGGCGTAAATGGGAAGCATTTGAGGAAGAAGTATTACTATCCGTTCTTGAGGATTTTGTTGCTCGGAAGCAACGGTGTGACACCGGTGCTTTCAAACAAGAAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004553 GO:0004649 GO:0006282 GO:0006950 GO:0006952 GO:0006970 GO:0006974 GO:0006979 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009620 GO:0009628 GO:0009987 GO:0010035 GO:0010118 GO:0016787 GO:0016798 GO:0019219 GO:0019222 GO:0031323 GO:0033554 GO:0042221 GO:0043207 GO:0048583 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051052 GO:0051171 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0080135 GO:0090332 GO:0098542 GO:1901700 GO:2001020

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PARG_cat

Protein Analysis

52

Amino Acids

6.05

Weight (kDa)

6.22

Isoelectric Point (pI)

70.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000261)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g18411 FvH4_1g22560 FvH4_1g24290 FvH4_1g24290 FvH4_1g24290 FvH4_1g29434 FvH4_2g04031 FvH4_2g04811 FvH4_2g07610 FvH4_2g09412 FvH4_3g15552 FvH4_3g30720 FvH4_4g05810 FvH4_4g09541 FvH4_4g15171 FvH4_6g09145 FvH4_6g49541 FvH4_7g00320 FvH4_7g11552
malus_domestica	MD00G1072400.v1.1 MD01G1188100.v1.1 MD07G1132000.v1.1 MD08G1190700.v1.1 MD10G1011200.v1.1 MD14G1164100.v1.1 MD15G1289200.v1.1 MD15G1289300.v1.1 MD17G1245100.v1.1
prunus_persica	Prupe.6G228600_v2.0.a1
pyrus_communis	pycom01g07070 pycom02g06890 pycom02g06900 pycom02g13930 pycom04g07470 pycom04g11770 pycom04g21930 pycom05g08520 pycom06g04490 pycom06g09560 pycom07g03750 pycom08g08760 pycom08g13660 pycom09g11520 pycom09g14250 pycom09g14770 pycom10g00720 pycom10g01290 pycom10g10480 pycom10g15700 pycom12420g00130 pycom12g05380 pycom12g08750 pycom13g19010 pycom13g29080 pycom14g06210 pycom14g13680 pycom14g19850 pycom15g22070 pycom15g23440 pycom15g24950 pycom15g25280 pycom16g11100 pycom16g17080 pycom16g26310 pycom17g15650 pycom17g15670 pycom17g20370
rosa_chinensis	RchiOBHm_Chr1g0373591 RchiOBHm_Chr2g0105551 RchiOBHm_Chr2g0106711 RchiOBHm_Chr2g0106721 RchiOBHm_Chr7g0219611
rosa_laevigata	RLG00000013773 RLG00000017436 RLG00000017533
rosa_multiflora	Rmu_co8001842.1_g000001 Rmu_co8158450.1_g000001 Rmu_sc0000516.1_g000067 Rmu_sc0000566.1_g000009 Rmu_sc0000965.1_g000025 Rmu_sc0001718.1_g000001 Rmu_sc0001719.1_g000020 Rmu_sc0001822.1_g000025 Rmu_sc0002219.1_g000003 Rmu_sc0002460.1_g000059 Rmu_sc0002757.1_g000001 Rmu_sc0002860.1_g000001 Rmu_sc0004531.1_g000001 Rmu_sc0005558.1_g000003 Rmu_sc0011218.1_g000001 Rmu_sc0011998.1_g000003 Rmu_sc0015560.1_g000002 Rmu_sc0015560.1_g000003
rosa_roxburghii	Rroxscaffold_1G00004200 Rroxscaffold_1G00026570 Rroxscaffold_1G00040370 Rroxscaffold_1G00044120 Rroxscaffold_1G00049590 Rroxscaffold_1G00059030 Rroxscaffold_2G00108440 Rroxscaffold_2G00108850 Rroxscaffold_2G00130680 Rroxscaffold_2G00132980 Rroxscaffold_2G00136860 Rroxscaffold_3G00218610 Rroxscaffold_4G00309940 Rroxscaffold_6G00405560
rosa_rugosa	Rorug02G0138000 Rorug02G0138100 Rorug02G0138100 Rorug06G0154000
rosa_samantha	Rh1AG121500 Rh1CG116300 Rh2AG189000 Rh2AG509600 Rh2BG200200 Rh2CG194100 Rh2DG195300 Rh5AG114400 Rh5DG488800
rosa_wichuraiana	Rw0G022020 Rw1G023650 Rw1G026380 Rw1G034750 Rw1G040770 Rw2G014870 Rw2G016560 Rw4G031190 Rw5G026570 Rw6G003020 Rw6G012060 Rw7G014300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgeI	ACCGGT	1 cut(s)	131
AgsI	TTSAA	2 cut(s)	22, 142
AsiGI	ACCGGT	1 cut(s)	131
BarI	GAAGNNNNNNTAC	2 cut(s)	66, 98
BpuEI	CTTGAG	2 cut(s)	15, 116
BsaWI	WCCGGW	1 cut(s)	131
Bse118I	RCCGGY	1 cut(s)	131
BshTI	ACCGGT	1 cut(s)	131
BsiSI	CCGG	1 cut(s)	132
BsmI	GAATGC	1 cut(s)	28
BsrFI	RCCGGY	1 cut(s)	131
BssAI	RCCGGY	1 cut(s)	131
Bst4CI	ACNGT	1 cut(s)	123
Cfr10I	RCCGGY	1 cut(s)	131
CspAI	ACCGGT	1 cut(s)	131
CviJI	RGCY	1 cut(s)	37
CviKI_1	RGCY	1 cut(s)	37
HapII	CCGG	1 cut(s)	132
HpaII	CCGG	1 cut(s)	132
Hpy188I	TCNGA	1 cut(s)	114
Hpy188III	TCNNGA	2 cut(s)	32, 95
HpyAV	CCTTC	1 cut(s)	42
HpyCH4III	ACNGT	1 cut(s)	123
LpnPI	CCDG	1 cut(s)	145
MaeIII	GTNAC	1 cut(s)	125
MboII	GAAGA	2 cut(s)	57, 86
MnlI	CCTC	2 cut(s)	64, 91
MspI	CCGG	1 cut(s)	132
Mva1269I	GAATGC	1 cut(s)	28
NmuCI	GTSAC	1 cut(s)	125
PctI	GAATGC	1 cut(s)	28
PinAI	ACCGGT	1 cut(s)	131
SgeI	CNNG	4 cut(s)	44, 107, 123, 144
SgrAI	CRCCGGYG	1 cut(s)	131
SmlI	CTYRAG	2 cut(s)	30, 95
SmoI	CTYRAG	2 cut(s)	30, 95
SspI	AATATT	1 cut(s)	16
TaaI	ACNGT	1 cut(s)	123
TseFI	GTSAC	1 cut(s)	125
Tsp45I	GTSAC	1 cut(s)	125
TspGWI	ACGGA	1 cut(s)	79

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.