Rw6G003020
MYB Family

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0000261
Physical Location & Seq
Forward (+)
4847947 .. 4849249
1303 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G003020.1

Sequence Viewer

Length: 897 bp
ATGGGTGGTACTTTATTAGTTTATTTGCATTGTTTCTTCTGTTTGCTTTGTGGTGATGAAAATATAGAGCAAGGGAAGTCAAGGCGTGTATGGACCAGCTTTGAAGAAGAATCTTTGTTGAATGTTCTTGACGGAATTATTGCTGGAGGACAACGCTGCGACACTGGAAGTTTCAAATCTGGTACTTTACTGAAAATCGAGAATGCTTTAAATCTTTTATGTCCCAATTCCAATCTGAAGGCAAGTCCACATATTGAGTCAAAGTTGAAGAAATTGAAGAAAGATTATAGCATAATCTATGACATGATGAACAAGAGTGGATTTGCATGGAATGATATCAAAAAGTGCATTGAAGTTGATAGTAATGAAGTATGGGATACATATTTGCAGCACAACAAAAAGGCAAAGGGATGGAGAAACAAGAAGTATCCATTATTTGATAGACTAGCTACCATCTTTGGGAGTGACCGTGCGACTGGAACTGGAGCTGAGGTCCCTGCTGATATGATGGAGGAGCAGAGCAACAATGAAGATGGCATTGAAGTTGAGAATGACACAAGCCCCATGTCAATGAGCACGGGACAATCTCAGGTTAGTCAGAAAAAGAGGAAAAGAAATGATGAAGATAAAATAATGCTTGCATTGGATAAATTGTTTGAAGAATCTGGAAAAAGAATGCAAGCAGTGACTGATGCTATAGTGAAAGGTAATGAAGATCGATCTGATATTGCTAAGGAACTTAAGAAAATGGGACTTTCTGTTCTAGACCAAATTGAGGCATTGAAAATCATTTTGGATAAGCCCCAAAATATCTCTGTGTTCATGTCCTTAGATGATGAAGTGCGAAAAGTGTATGTGGATAACTTGCTTGCGGGCACTGCTAGAGGATCTACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

298

Amino Acids

33.44

Weight (kDa)

5.63

Isoelectric Point (pI)

49.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_3 PF12776 31 - 128 6.7e-09 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000261)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18411 FvH4_1g22560 FvH4_1g24290 FvH4_1g24290 FvH4_1g24290 FvH4_1g29434 FvH4_2g04031 FvH4_2g04811 FvH4_2g07610 FvH4_2g09412 FvH4_3g15552 FvH4_3g30720 FvH4_4g05810 FvH4_4g09541 FvH4_4g15171 FvH4_6g09145 FvH4_6g49541 FvH4_7g00320 FvH4_7g11552
malus_domestica MD00G1072400.v1.1 MD01G1188100.v1.1 MD07G1132000.v1.1 MD08G1190700.v1.1 MD10G1011200.v1.1 MD14G1164100.v1.1 MD15G1289200.v1.1 MD15G1289300.v1.1 MD17G1245100.v1.1
prunus_persica Prupe.6G228600_v2.0.a1
pyrus_communis pycom01g07070 pycom02g06890 pycom02g06900 pycom02g13930 pycom04g07470 pycom04g11770 pycom04g21930 pycom05g08520 pycom06g04490 pycom06g09560 pycom07g03750 pycom08g08760 pycom08g13660 pycom09g11520 pycom09g14250 pycom09g14770 pycom10g00720 pycom10g01290 pycom10g10480 pycom10g15700 pycom12420g00130 pycom12g05380 pycom12g08750 pycom13g19010 pycom13g29080 pycom14g06210 pycom14g13680 pycom14g19850 pycom15g22070 pycom15g23440 pycom15g24950 pycom15g25280 pycom16g11100 pycom16g17080 pycom16g26310 pycom17g15650 pycom17g15670 pycom17g20370
rosa_chinensis RchiOBHm_Chr1g0373591 RchiOBHm_Chr2g0105551 RchiOBHm_Chr2g0106711 RchiOBHm_Chr2g0106721 RchiOBHm_Chr7g0219611
rosa_laevigata RLG00000013773 RLG00000017436 RLG00000017533
rosa_multiflora Rmu_co8001842.1_g000001 Rmu_co8158450.1_g000001 Rmu_sc0000516.1_g000067 Rmu_sc0000566.1_g000009 Rmu_sc0000965.1_g000025 Rmu_sc0001718.1_g000001 Rmu_sc0001719.1_g000020 Rmu_sc0001822.1_g000025 Rmu_sc0002219.1_g000003 Rmu_sc0002460.1_g000059 Rmu_sc0002757.1_g000001 Rmu_sc0002860.1_g000001 Rmu_sc0004531.1_g000001 Rmu_sc0005558.1_g000003 Rmu_sc0011218.1_g000001 Rmu_sc0011998.1_g000003 Rmu_sc0015560.1_g000002 Rmu_sc0015560.1_g000003
rosa_roxburghii Rroxscaffold_1G00004200 Rroxscaffold_1G00026570 Rroxscaffold_1G00040370 Rroxscaffold_1G00044120 Rroxscaffold_1G00049590 Rroxscaffold_1G00059030 Rroxscaffold_2G00108440 Rroxscaffold_2G00108850 Rroxscaffold_2G00130680 Rroxscaffold_2G00132980 Rroxscaffold_2G00136860 Rroxscaffold_3G00218610 Rroxscaffold_4G00309940 Rroxscaffold_6G00405560
rosa_rugosa Rorug02G0138000 Rorug02G0138100 Rorug02G0138100 Rorug06G0154000
rosa_samantha Rh1AG121500 Rh1CG116300 Rh2AG189000 Rh2AG509600 Rh2BG200200 Rh2CG194100 Rh2DG195300 Rh5AG114400 Rh5DG488800
rosa_wichuraiana Rw0G022020 Rw1G023650 Rw1G026380 Rw1G034750 Rw1G040770 Rw2G014870 Rw2G016560 Rw4G031190 Rw5G026570 Rw6G003020 Rw6G012060 Rw7G014300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 872
AclWI GGATC 1 cut(s) 895
AcuI CTGAAG 1 cut(s) 257
AfaI GTAC 2 cut(s) 10, 184
AfiI CCNNNNNNNGG 2 cut(s) 459, 775
AflII CTTAAG 1 cut(s) 740
AgsI TTSAA 9 cut(s) 104, 121, 175, 268, 277, 353, 542, 659, 784
AjuI GAANNNNNNNTTGG 2 cut(s) 776, 808
AloI GAACNNNNNNTCC 2 cut(s) 744, 776
AluBI AGCT 3 cut(s) 99, 449, 488
AluI AGCT 3 cut(s) 99, 449, 488
Alw21I GWGCWC 1 cut(s) 578
AlwI GGATC 1 cut(s) 895
AlwNI CAGNNNCTG 1 cut(s) 689
ApeKI GCWGC 2 cut(s) 156, 388
AspS9I GGNCC 2 cut(s) 93, 493
AsuHPI GGTGA 1 cut(s) 65
AvaII GGWCC 2 cut(s) 93, 493
BaeGI GKGCMC 1 cut(s) 878
Bbv12I GWGCWC 1 cut(s) 578
BbvCI CCTCAGC 1 cut(s) 489
BbvI GCAGC 2 cut(s) 143, 400
BccI CCATC 4 cut(s) 405, 461, 502, 527
BciVI GTATCC 2 cut(s) 370, 438
BfaI CTAG 3 cut(s) 446, 764, 882
BfmI CTRYAG 1 cut(s) 696
BfrI CTTAAG 1 cut(s) 740
BfuI GTATCC 2 cut(s) 370, 438
BisI GCNGC 2 cut(s) 157, 389
BlsI GCNGC 2 cut(s) 158, 390
Bme18I GGWCC 2 cut(s) 93, 493
BmgT120I GGNCC 2 cut(s) 93, 493
BmiI GGNNCC 1 cut(s) 495
BmsI GCATC 1 cut(s) 682
BpmI CTGGAG 2 cut(s) 165, 504
Bpu10I CCTNAGC 2 cut(s) 489, 732
Bsa29I ATCGAT 1 cut(s) 718
BsaXI ACNNNNNCTCC 4 cut(s) 454, 477, 484, 507
Bsc4I CCNNNNNNNGG 2 cut(s) 459, 775
Bse1I ACTGG 3 cut(s) 169, 481, 487
BseCI ATCGAT 1 cut(s) 718
BseGI GGATG 1 cut(s) 416
BseLI CCNNNNNNNGG 2 cut(s) 459, 775
BseMII CTCAG 2 cut(s) 480, 602
BseNI ACTGG 3 cut(s) 169, 481, 487
BseRI GAGGAG 1 cut(s) 527
BseSI GKGCMC 1 cut(s) 878
BseXI GCAGC 2 cut(s) 143, 400
BshVI ATCGAT 1 cut(s) 718
BsiHKAI GWGCWC 1 cut(s) 578
BslFI GGGAC 4 cut(s) 207, 479, 594, 765
BslI CCNNNNNNNGG 2 cut(s) 459, 775
BsmFI GGGAC 4 cut(s) 207, 479, 594, 765
BsmI GAATGC 2 cut(s) 208, 681
Bsp1286I GDGCHC 2 cut(s) 578, 878
Bsp143I GATC 3 cut(s) 715, 719, 887
BspACI CCGC 1 cut(s) 872
BspCNI CTCAG 2 cut(s) 481, 601
BspDI ATCGAT 1 cut(s) 718
BspLI GGNNCC 1 cut(s) 495
BspPI GGATC 1 cut(s) 895
BspTI CTTAAG 1 cut(s) 740
BsrI ACTGG 3 cut(s) 169, 481, 487
BssMI GATC 3 cut(s) 715, 719, 887
Bst4CI ACNGT 1 cut(s) 470
BstAFI CTTAAG 1 cut(s) 740
BstC8I GCNNGC 4 cut(s) 639, 681, 870, 874
BstDEI CTNAG 4 cut(s) 489, 588, 732, 829
BstF5I GGATG 1 cut(s) 416
BstKTI GATC 3 cut(s) 718, 722, 890
BstMBI GATC 3 cut(s) 715, 719, 887
BstMWI GCNNNNNNNGC 1 cut(s) 878
BstSFI CTRYAG 1 cut(s) 696
BstSLI GKGCMC 1 cut(s) 878
BstV1I GCAGC 2 cut(s) 143, 400
BstX2I RGATCY 1 cut(s) 887
BstYI RGATCY 1 cut(s) 887
Bsu15I ATCGAT 1 cut(s) 718
BsuI GTATCC 2 cut(s) 370, 438
BsuTUI ATCGAT 1 cut(s) 718
BtsCI GGATG 1 cut(s) 416
BtsI GCAGTG 2 cut(s) 690, 876
BtsIMutI CAGTG 3 cut(s) 162, 690, 876
Cac8I GCNNGC 4 cut(s) 639, 681, 870, 874
CaiI CAGNNNCTG 1 cut(s) 689
Cfr13I GGNCC 2 cut(s) 93, 493
ClaI ATCGAT 1 cut(s) 718
Csp6I GTAC 2 cut(s) 9, 183
CviAII CATG 4 cut(s) 304, 327, 565, 823
CviJI RGCY 5 cut(s) 99, 449, 488, 561, 802
CviKI_1 RGCY 5 cut(s) 99, 449, 488, 561, 802
CviQI GTAC 2 cut(s) 9, 183
DdeI CTNAG 4 cut(s) 489, 588, 732, 829
DpnI GATC 3 cut(s) 717, 721, 889
DpnII GATC 3 cut(s) 715, 719, 887
DraI TTTAAA 1 cut(s) 210
Eco32I GATATC 1 cut(s) 337
Eco47I GGWCC 2 cut(s) 93, 493
Eco57I CTGAAG 1 cut(s) 257
EcoO109I RGGNCCY 1 cut(s) 493
EcoRV GATATC 1 cut(s) 337
FaeI CATG 4 cut(s) 307, 330, 568, 826
FaqI GGGAC 4 cut(s) 207, 479, 594, 765
FatI CATG 4 cut(s) 303, 326, 564, 822
FauI CCCGC 1 cut(s) 865
Fnu4HI GCNGC 2 cut(s) 157, 389
FokI GGATG 1 cut(s) 423
Fsp4HI GCNGC 2 cut(s) 157, 389
FspBI CTAG 3 cut(s) 446, 764, 882
GluI GCNGC 2 cut(s) 157, 389
GsuI CTGGAG 2 cut(s) 165, 504
Hin1II CATG 4 cut(s) 307, 330, 568, 826
HinfI GANTC 3 cut(s) 110, 257, 662
HphI GGTGA 1 cut(s) 65
Hpy166II GTNNAC 1 cut(s) 248
Hpy188I TCNGA 3 cut(s) 237, 600, 724
Hpy188III TCNNGA 4 cut(s) 128, 199, 666, 764
Hpy8I GTNNAC 1 cut(s) 248
HpyAV CCTTC 1 cut(s) 232
HpyCH4III ACNGT 1 cut(s) 470
HpyCH4V TGCA 6 cut(s) 28, 326, 348, 388, 641, 679
HpyF10VI GCNNNNNNNGC 1 cut(s) 878
HpyF3I CTNAG 4 cut(s) 489, 588, 732, 829
Hsp92II CATG 4 cut(s) 307, 330, 568, 826
Kzo9I GATC 3 cut(s) 715, 719, 887
LmnI GCTCC 2 cut(s) 485, 514
LpnPI CCDG 9 cut(s) 109, 129, 150, 165, 462, 468, 510, 575, 651
Lsp1109I GCAGC 2 cut(s) 143, 400
LweI GCATC 1 cut(s) 682
MaeI CTAG 3 cut(s) 446, 764, 882
MaeIII GTNAC 2 cut(s) 464, 685
MalI GATC 3 cut(s) 717, 721, 889
MboI GATC 3 cut(s) 715, 719, 887
MboII GAAGA 9 cut(s) 28, 116, 119, 280, 289, 542, 635, 671, 725
MflI RGATCY 1 cut(s) 887
MhlI GDGCHC 2 cut(s) 578, 878
MluCI AATT 5 cut(s) 135, 226, 272, 650, 771
MlyI GAGTC 1 cut(s) 266
MnlI CCTC 6 cut(s) 140, 484, 505, 600, 769, 878
MseI TTAA 2 cut(s) 209, 741
MslI CAYNNNNRTG 1 cut(s) 569
MspCI CTTAAG 1 cut(s) 740
Mva1269I GAATGC 2 cut(s) 208, 681
MwoI GCNNNNNNNGC 1 cut(s) 878
NdeII GATC 3 cut(s) 715, 719, 887
NlaIII CATG 4 cut(s) 307, 330, 568, 826
NlaIV GGNNCC 1 cut(s) 495
NmuCI GTSAC 2 cut(s) 464, 685
PctI GAATGC 2 cut(s) 208, 681
PfeI GAWTC 2 cut(s) 110, 662
PkrI GCNGC 2 cut(s) 158, 390
PleI GAGTC 1 cut(s) 265
PpsI GAGTC 1 cut(s) 265
PpuMI RGGWCCY 1 cut(s) 493
Psp5II RGGWCCY 1 cut(s) 493
PspN4I GGNNCC 1 cut(s) 495
PspPI GGNCC 2 cut(s) 93, 493
PspPPI RGGWCCY 1 cut(s) 493
PstNI CAGNNNCTG 1 cut(s) 689
PsuI RGATCY 1 cut(s) 887
RsaI GTAC 2 cut(s) 10, 184
RsaNI GTAC 2 cut(s) 9, 183
RseI CAYNNNNRTG 1 cut(s) 569
SaqAI TTAA 2 cut(s) 209, 741
SatI GCNGC 2 cut(s) 157, 389
Sau3AI GATC 3 cut(s) 715, 719, 887
Sau96I GGNCC 2 cut(s) 93, 493
SchI GAGTC 1 cut(s) 266
SduI GDGCHC 2 cut(s) 578, 878
SetI ASST 6 cut(s) 101, 451, 490, 495, 594, 709
SfaNI GCATC 1 cut(s) 682
SfcI CTRYAG 1 cut(s) 696
SinI GGWCC 2 cut(s) 93, 493
SmiMI CAYNNNNRTG 1 cut(s) 569
SmlI CTYRAG 1 cut(s) 740
SmoI CTYRAG 1 cut(s) 740
Sse9I AATT 5 cut(s) 135, 226, 272, 650, 771
SsiI CCGC 1 cut(s) 872
SspMI CTAG 3 cut(s) 446, 764, 882
TaaI ACNGT 1 cut(s) 470
TaqI TCGA 2 cut(s) 198, 718
TasI AATT 5 cut(s) 135, 226, 272, 650, 771
TfiI GAWTC 2 cut(s) 110, 662
Tru1I TTAA 2 cut(s) 209, 741
Tru9I TTAA 2 cut(s) 209, 741
TscAI CASTG 3 cut(s) 169, 690, 883
TseFI GTSAC 2 cut(s) 464, 685
TseI GCWGC 2 cut(s) 156, 388
Tsp45I GTSAC 2 cut(s) 464, 685
TspDTI ATGAA 8 cut(s) 72, 323, 381, 543, 636, 726, 811, 852
TspGWI ACGGA 1 cut(s) 147
TspRI CASTG 3 cut(s) 169, 690, 883
Vha464I CTTAAG 1 cut(s) 740
VpaK11BI GGWCC 2 cut(s) 93, 493
XbaI TCTAGA 1 cut(s) 763
XspI CTAG 3 cut(s) 446, 764, 882
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.