FvH4_2g09412
MYB Family

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000261
Physical Location & Seq
Forward (+)
8345790 .. 8346737
948 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g09412.t1

Sequence Viewer

Length: 687 bp
ATGGAAAATGAGGATATGAATTCTGAGCAGGCAAAGGCAGCTGGAACTAGGCGCAAGTGGACAAACTTTGAGGAAGATGCATTATTGTTTGTCCTTGATGACTTTGGTTCTCGTGGCTTGCGATGTGAAACAGGGAGTTTCAAATCTGGAACTTTGCTTCAAATGGAGAAGTCTTTGGAGCTTTTGTGCCCTGGCTCCAATCTCAAGGCATATCCACACATTGAATCAAAATTGAAGAAATGGAAACAAAATTTCAGTATTGTGTATGACATGACAAACACAAGTGGATTTGCATGGAATGATGCCAAGAAGTGCATTGAAGTTGATAGCAATGATGCATGGGATATGTATGTTCAGGATCGTGCCAATGGAAGAGGAGCTGAAACCCCTGCTGATATGGCGGAATCTCAAAGCATGAATGATATTAATTCTGAGCAAATGGTTAATGATAAAGTATTTGAAGAATCAGGAAAGAGGATGCAAATGGTAACTGAGGCCATATTGAAGGGTAATGAAGATCGCTCTGACATTGCCAAAGAGTTGAAGAACATGGGATTATCTGTTGATGATCAAATTGTTGCATTAGGAATCATCCTAGAGAGACCACAGAACATCTCTATCTTCAAGTCATTGGATGATGATGTTAGAAGGGTATATGTTCAGAACTTGCTTATGAGCAATAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

229

Amino Acids

25.89

Weight (kDa)

4.79

Isoelectric Point (pI)

40.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_3 PF12776 19 - 117 5.2e-06 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000261)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18411 FvH4_1g22560 FvH4_1g24290 FvH4_1g24290 FvH4_1g24290 FvH4_1g29434 FvH4_2g04031 FvH4_2g04811 FvH4_2g07610 FvH4_2g09412 FvH4_3g15552 FvH4_3g30720 FvH4_4g05810 FvH4_4g09541 FvH4_4g15171 FvH4_6g09145 FvH4_6g49541 FvH4_7g00320 FvH4_7g11552
malus_domestica MD00G1072400.v1.1 MD01G1188100.v1.1 MD07G1132000.v1.1 MD08G1190700.v1.1 MD10G1011200.v1.1 MD14G1164100.v1.1 MD15G1289200.v1.1 MD15G1289300.v1.1 MD17G1245100.v1.1
prunus_persica Prupe.6G228600_v2.0.a1
pyrus_communis pycom01g07070 pycom02g06890 pycom02g06900 pycom02g13930 pycom04g07470 pycom04g11770 pycom04g21930 pycom05g08520 pycom06g04490 pycom06g09560 pycom07g03750 pycom08g08760 pycom08g13660 pycom09g11520 pycom09g14250 pycom09g14770 pycom10g00720 pycom10g01290 pycom10g10480 pycom10g15700 pycom12420g00130 pycom12g05380 pycom12g08750 pycom13g19010 pycom13g29080 pycom14g06210 pycom14g13680 pycom14g19850 pycom15g22070 pycom15g23440 pycom15g24950 pycom15g25280 pycom16g11100 pycom16g17080 pycom16g26310 pycom17g15650 pycom17g15670 pycom17g20370
rosa_chinensis RchiOBHm_Chr1g0373591 RchiOBHm_Chr2g0105551 RchiOBHm_Chr2g0106711 RchiOBHm_Chr2g0106721 RchiOBHm_Chr7g0219611
rosa_laevigata RLG00000013773 RLG00000017436 RLG00000017533
rosa_multiflora Rmu_co8001842.1_g000001 Rmu_co8158450.1_g000001 Rmu_sc0000516.1_g000067 Rmu_sc0000566.1_g000009 Rmu_sc0000965.1_g000025 Rmu_sc0001718.1_g000001 Rmu_sc0001719.1_g000020 Rmu_sc0001822.1_g000025 Rmu_sc0002219.1_g000003 Rmu_sc0002460.1_g000059 Rmu_sc0002757.1_g000001 Rmu_sc0002860.1_g000001 Rmu_sc0004531.1_g000001 Rmu_sc0005558.1_g000003 Rmu_sc0011218.1_g000001 Rmu_sc0011998.1_g000003 Rmu_sc0015560.1_g000002 Rmu_sc0015560.1_g000003
rosa_roxburghii Rroxscaffold_1G00004200 Rroxscaffold_1G00026570 Rroxscaffold_1G00040370 Rroxscaffold_1G00044120 Rroxscaffold_1G00049590 Rroxscaffold_1G00059030 Rroxscaffold_2G00108440 Rroxscaffold_2G00108850 Rroxscaffold_2G00130680 Rroxscaffold_2G00132980 Rroxscaffold_2G00136860 Rroxscaffold_3G00218610 Rroxscaffold_4G00309940 Rroxscaffold_6G00405560
rosa_rugosa Rorug02G0138000 Rorug02G0138100 Rorug02G0138100 Rorug06G0154000
rosa_samantha Rh1AG121500 Rh1CG116300 Rh2AG189000 Rh2AG509600 Rh2BG200200 Rh2CG194100 Rh2DG195300 Rh5AG114400 Rh5DG488800
rosa_wichuraiana Rw0G022020 Rw1G023650 Rw1G026380 Rw1G034750 Rw1G040770 Rw2G014870 Rw2G016560 Rw4G031190 Rw5G026570 Rw6G003020 Rw6G012060 Rw7G014300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 401
AclWI GGATC 1 cut(s) 366
AcsI RAATTY 2 cut(s) 19, 250
AgsI TTSAA 9 cut(s) 142, 161, 224, 235, 320, 461, 505, 544, 625
AjnI CCWGG 1 cut(s) 190
AluBI AGCT 3 cut(s) 41, 181, 380
AluI AGCT 3 cut(s) 41, 181, 380
Alw26I GTCTC 1 cut(s) 595
AlwI GGATC 1 cut(s) 366
AoxI GGCC 1 cut(s) 495
ApeKI GCWGC 1 cut(s) 38
ApoI RAATTY 2 cut(s) 19, 250
AseI ATTAAT 1 cut(s) 426
AspLEI GCGC 1 cut(s) 54
BaeGI GKGCMC 1 cut(s) 191
BauI CACGAG 1 cut(s) 111
BbvI GCAGC 1 cut(s) 50
BciT130I CCWGG 1 cut(s) 192
BclI TGATCA 1 cut(s) 568
BcoDI GTCTC 1 cut(s) 595
BfaI CTAG 2 cut(s) 48, 596
BisI GCNGC 1 cut(s) 39
BlsI GCNGC 1 cut(s) 40
Bme1390I CCNGG 1 cut(s) 192
BmiI GGNNCC 1 cut(s) 196
BmrFI CCNGG 1 cut(s) 192
BmsI GCATC 4 cut(s) 67, 292, 325, 468
BpuEI CTTGAG 1 cut(s) 188
BsaI GGTCTC 1 cut(s) 595
BsaJI CCNNGG 1 cut(s) 190
BsaXI ACNNNNNCTCC 2 cut(s) 170, 200
Bse3DI GCAATG 2 cut(s) 337, 528
BseBI CCWGG 1 cut(s) 192
BseDI CCNNGG 1 cut(s) 190
BseGI GGATG 3 cut(s) 483, 591, 640
BseMI GCAATG 2 cut(s) 337, 528
BseMII CTCAG 3 cut(s) 15, 423, 483
BseRI GAGGAG 1 cut(s) 390
BseSI GKGCMC 1 cut(s) 191
BseXI GCAGC 1 cut(s) 50
BshFI GGCC 1 cut(s) 497
BsmAI GTCTC 1 cut(s) 595
BsnI GGCC 1 cut(s) 497
Bso31I GGTCTC 1 cut(s) 595
Bsp1286I GDGCHC 1 cut(s) 191
Bsp143I GATC 3 cut(s) 358, 517, 568
BspACI CCGC 1 cut(s) 401
BspANI GGCC 1 cut(s) 497
BspCNI CTCAG 3 cut(s) 16, 424, 484
BspLI GGNNCC 1 cut(s) 196
BspPI GGATC 1 cut(s) 366
BspTNI GGTCTC 1 cut(s) 595
BsrDI GCAATG 2 cut(s) 337, 528
BssECI CCNNGG 1 cut(s) 190
BssMI GATC 3 cut(s) 358, 517, 568
BssSI CACGAG 1 cut(s) 111
Bst2BI CACGAG 1 cut(s) 111
Bst2UI CCWGG 1 cut(s) 192
Bst6I CTCTTC 1 cut(s) 367
BstC8I GCNNGC 2 cut(s) 30, 119
BstDEI CTNAG 3 cut(s) 24, 432, 492
BstF5I GGATG 3 cut(s) 483, 591, 640
BstHHI GCGC 1 cut(s) 54
BstKTI GATC 3 cut(s) 361, 520, 571
BstMAI GTCTC 1 cut(s) 595
BstMBI GATC 3 cut(s) 358, 517, 568
BstMWI GCNNNNNNNGC 2 cut(s) 38, 398
BstNI CCWGG 1 cut(s) 192
BstSCI CCNGG 1 cut(s) 190
BstSLI GKGCMC 1 cut(s) 191
BstV1I GCAGC 1 cut(s) 50
BsuRI GGCC 1 cut(s) 497
BtgZI GCGATG 1 cut(s) 136
BtsCI GGATG 3 cut(s) 483, 591, 640
Cac8I GCNNGC 2 cut(s) 30, 119
CfoI GCGC 1 cut(s) 54
CviAII CATG 5 cut(s) 271, 294, 339, 415, 550
CviJI RGCY 6 cut(s) 41, 117, 181, 195, 380, 497
CviKI_1 RGCY 6 cut(s) 41, 117, 181, 195, 380, 497
DdeI CTNAG 3 cut(s) 24, 432, 492
DpnI GATC 3 cut(s) 360, 519, 570
DpnII GATC 3 cut(s) 358, 517, 568
Eam1104I CTCTTC 1 cut(s) 367
EarI CTCTTC 1 cut(s) 367
EciI GGCGGA 1 cut(s) 416
Eco31I GGTCTC 1 cut(s) 595
EcoRI GAATTC 1 cut(s) 19
EcoRII CCWGG 1 cut(s) 190
EcoT22I ATGCAT 2 cut(s) 82, 340
FaeI CATG 5 cut(s) 274, 297, 342, 418, 553
FatI CATG 5 cut(s) 270, 293, 338, 414, 549
FbaI TGATCA 1 cut(s) 568
Fnu4HI GCNGC 1 cut(s) 39
FokI GGATG 3 cut(s) 490, 578, 647
Fsp4HI GCNGC 1 cut(s) 39
FspBI CTAG 2 cut(s) 48, 596
GlaI GCGC 1 cut(s) 53
GluI GCNGC 1 cut(s) 39
HaeIII GGCC 1 cut(s) 497
HhaI GCGC 1 cut(s) 54
Hin1II CATG 5 cut(s) 274, 297, 342, 418, 553
Hin6I GCGC 1 cut(s) 52
HinP1I GCGC 1 cut(s) 52
HinfI GANTC 4 cut(s) 224, 404, 464, 588
Hpy166II GTNNAC 1 cut(s) 60
Hpy188I TCNGA 4 cut(s) 25, 433, 526, 663
Hpy188III TCNNGA 3 cut(s) 147, 356, 468
Hpy8I GTNNAC 1 cut(s) 60
HpyAV CCTTC 2 cut(s) 499, 642
HpyCH4V TGCA 6 cut(s) 80, 293, 315, 338, 481, 581
HpyF10VI GCNNNNNNNGC 2 cut(s) 38, 398
HpyF3I CTNAG 3 cut(s) 24, 432, 492
Hsp92II CATG 5 cut(s) 274, 297, 342, 418, 553
HspAI GCGC 1 cut(s) 52
Ksp22I TGATCA 1 cut(s) 568
Kzo9I GATC 3 cut(s) 358, 517, 568
LmnI GCTCC 3 cut(s) 178, 200, 377
LpnPI CCDG 9 cut(s) 14, 27, 117, 132, 177, 204, 341, 402, 453
Lsp1109I GCAGC 1 cut(s) 50
LweI GCATC 4 cut(s) 67, 292, 325, 468
MaeI CTAG 2 cut(s) 48, 596
MaeIII GTNAC 1 cut(s) 487
MalI GATC 3 cut(s) 360, 519, 570
MboI GATC 3 cut(s) 358, 517, 568
MboII GAAGA 7 cut(s) 86, 247, 384, 473, 527, 556, 613
MhlI GDGCHC 1 cut(s) 191
MluCI AATT 5 cut(s) 19, 230, 250, 427, 573
MnlI CCTC 5 cut(s) 4, 64, 368, 468, 487
Mph1103I ATGCAT 2 cut(s) 82, 340
MseI TTAA 2 cut(s) 426, 444
MspA1I CMGCKG 1 cut(s) 41
MspR9I CCNGG 1 cut(s) 192
MvaI CCWGG 1 cut(s) 192
MwoI GCNNNNNNNGC 2 cut(s) 38, 398
NdeII GATC 3 cut(s) 358, 517, 568
NlaIII CATG 5 cut(s) 274, 297, 342, 418, 553
NlaIV GGNNCC 1 cut(s) 196
NsiI ATGCAT 2 cut(s) 82, 340
PcsI WCGNNNNNNNCGW 1 cut(s) 118
PfeI GAWTC 4 cut(s) 224, 404, 464, 588
PkrI GCNGC 1 cut(s) 40
PshBI ATTAAT 1 cut(s) 426
Psp6I CCWGG 1 cut(s) 190
PspGI CCWGG 1 cut(s) 190
PspN4I GGNNCC 1 cut(s) 196
PvuII CAGCTG 1 cut(s) 41
SaqAI TTAA 2 cut(s) 426, 444
SatI GCNGC 1 cut(s) 39
Sau3AI GATC 3 cut(s) 358, 517, 568
ScrFI CCNGG 1 cut(s) 192
SduI GDGCHC 1 cut(s) 191
SetI ASST 3 cut(s) 43, 183, 382
SfaNI GCATC 4 cut(s) 67, 292, 325, 468
SmlI CTYRAG 1 cut(s) 203
SmoI CTYRAG 1 cut(s) 203
Sse9I AATT 5 cut(s) 19, 230, 250, 427, 573
SsiI CCGC 1 cut(s) 401
SspMI CTAG 2 cut(s) 48, 596
StyD4I CCNGG 1 cut(s) 190
TasI AATT 5 cut(s) 19, 230, 250, 427, 573
TfiI GAWTC 4 cut(s) 224, 404, 464, 588
Tru1I TTAA 2 cut(s) 426, 444
Tru9I TTAA 2 cut(s) 426, 444
TseI GCWGC 1 cut(s) 38
TspDTI ATGAA 3 cut(s) 32, 431, 528
VspI ATTAAT 1 cut(s) 426
XapI RAATTY 2 cut(s) 19, 250
XspI CTAG 2 cut(s) 48, 596
Zsp2I ATGCAT 2 cut(s) 82, 340
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.