Rw1G040770
MYB Family

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000261
Physical Location & Seq
Forward (+)
67892980 .. 67894253
1274 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G040770.1

Sequence Viewer

Length: 855 bp
ATGGAAAGTGGTGATGAAAATATAGAGCAAGGGAAGTCAAGGCGTGTATGGACCAGCTTTGAAGAAGAATCTTTGTTGAATGTTCTTGACGGAATTATTGCTGGAGGACAACGCTGCGACACTGGAAGTTTCAAATCTGGTACTTTACTGAAAATCGAGAATGCTTTAAATCTTTTATGTCCCAATTCCAATCTGAAGGCAAGTCCACATATTGAGTCAAAGTTGAAGAAATTGAAGAAAGATTATAGCATAATCTATGACATGATGAACAAGAGTGGATTTGCATGGAATGATATCAAAAAGTGCATTGAAGTTGATAGTAATGAAGTATGGGATACATATTTGCAGCACAACAAAAAGGCAAAGGGATGGAGAAACAAGAAGTATCCATTATTTGATAGACTAGCTACCATCTTTGGGAGTGACCGTGCGACTGGAACTGGAGCTGAGGTCCCTGCTGATATGATGGAGGAGCAGAGCAACAATGAAGATGGCATTGAAGTTGAGAATGACACAAGCCCCATGTCAATGAGCACGGGACAATCTCAGGTTAGTCAGAAAAAGAGGAAAAGAAATGATGAAGATAAAATAATGCTTGCATTGGATAAATTGTTTGAAGAATCTGGAAAAAGAATGCAAGCAGTGACTGATGCTATAGTGAAAGGTAATGAAGATCGATCTGATATTGCTAAGGAACTTAAGAAAATGGGACTTTCTGTTCTAGACCAAATTGAGGCATTGAAAATCATTTTGGATAAGCCCCAAAATATCTCTGTGTTCATGTCCTTAGATGATGAAGTGCGAAAAGTGTATGTGGATAACTTGCTTGCGGGCACTGCTAGAGGATCTACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

284

Amino Acids

31.87

Weight (kDa)

5.39

Isoelectric Point (pI)

51.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_3 PF12776 17 - 114 6.1e-09 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000261)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18411 FvH4_1g22560 FvH4_1g24290 FvH4_1g24290 FvH4_1g24290 FvH4_1g29434 FvH4_2g04031 FvH4_2g04811 FvH4_2g07610 FvH4_2g09412 FvH4_3g15552 FvH4_3g30720 FvH4_4g05810 FvH4_4g09541 FvH4_4g15171 FvH4_6g09145 FvH4_6g49541 FvH4_7g00320 FvH4_7g11552
malus_domestica MD00G1072400.v1.1 MD01G1188100.v1.1 MD07G1132000.v1.1 MD08G1190700.v1.1 MD10G1011200.v1.1 MD14G1164100.v1.1 MD15G1289200.v1.1 MD15G1289300.v1.1 MD17G1245100.v1.1
prunus_persica Prupe.6G228600_v2.0.a1
pyrus_communis pycom01g07070 pycom02g06890 pycom02g06900 pycom02g13930 pycom04g07470 pycom04g11770 pycom04g21930 pycom05g08520 pycom06g04490 pycom06g09560 pycom07g03750 pycom08g08760 pycom08g13660 pycom09g11520 pycom09g14250 pycom09g14770 pycom10g00720 pycom10g01290 pycom10g10480 pycom10g15700 pycom12420g00130 pycom12g05380 pycom12g08750 pycom13g19010 pycom13g29080 pycom14g06210 pycom14g13680 pycom14g19850 pycom15g22070 pycom15g23440 pycom15g24950 pycom15g25280 pycom16g11100 pycom16g17080 pycom16g26310 pycom17g15650 pycom17g15670 pycom17g20370
rosa_chinensis RchiOBHm_Chr1g0373591 RchiOBHm_Chr2g0105551 RchiOBHm_Chr2g0106711 RchiOBHm_Chr2g0106721 RchiOBHm_Chr7g0219611
rosa_laevigata RLG00000013773 RLG00000017436 RLG00000017533
rosa_multiflora Rmu_co8001842.1_g000001 Rmu_co8158450.1_g000001 Rmu_sc0000516.1_g000067 Rmu_sc0000566.1_g000009 Rmu_sc0000965.1_g000025 Rmu_sc0001718.1_g000001 Rmu_sc0001719.1_g000020 Rmu_sc0001822.1_g000025 Rmu_sc0002219.1_g000003 Rmu_sc0002460.1_g000059 Rmu_sc0002757.1_g000001 Rmu_sc0002860.1_g000001 Rmu_sc0004531.1_g000001 Rmu_sc0005558.1_g000003 Rmu_sc0011218.1_g000001 Rmu_sc0011998.1_g000003 Rmu_sc0015560.1_g000002 Rmu_sc0015560.1_g000003
rosa_roxburghii Rroxscaffold_1G00004200 Rroxscaffold_1G00026570 Rroxscaffold_1G00040370 Rroxscaffold_1G00044120 Rroxscaffold_1G00049590 Rroxscaffold_1G00059030 Rroxscaffold_2G00108440 Rroxscaffold_2G00108850 Rroxscaffold_2G00130680 Rroxscaffold_2G00132980 Rroxscaffold_2G00136860 Rroxscaffold_3G00218610 Rroxscaffold_4G00309940 Rroxscaffold_6G00405560
rosa_rugosa Rorug02G0138000 Rorug02G0138100 Rorug02G0138100 Rorug06G0154000
rosa_samantha Rh1AG121500 Rh1CG116300 Rh2AG189000 Rh2AG509600 Rh2BG200200 Rh2CG194100 Rh2DG195300 Rh5AG114400 Rh5DG488800
rosa_wichuraiana Rw0G022020 Rw1G023650 Rw1G026380 Rw1G034750 Rw1G040770 Rw2G014870 Rw2G016560 Rw4G031190 Rw5G026570 Rw6G003020 Rw6G012060 Rw7G014300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 830
AclWI GGATC 1 cut(s) 853
AcuI CTGAAG 1 cut(s) 215
AfaI GTAC 1 cut(s) 142
AfiI CCNNNNNNNGG 2 cut(s) 417, 733
AflII CTTAAG 1 cut(s) 698
AgsI TTSAA 9 cut(s) 62, 79, 133, 226, 235, 311, 500, 617, 742
AjuI GAANNNNNNNTTGG 2 cut(s) 734, 766
AloI GAACNNNNNNTCC 2 cut(s) 702, 734
AluBI AGCT 3 cut(s) 57, 407, 446
AluI AGCT 3 cut(s) 57, 407, 446
Alw21I GWGCWC 1 cut(s) 536
AlwI GGATC 1 cut(s) 853
AlwNI CAGNNNCTG 1 cut(s) 647
ApeKI GCWGC 2 cut(s) 114, 346
AspS9I GGNCC 2 cut(s) 51, 451
AsuHPI GGTGA 1 cut(s) 23
AvaII GGWCC 2 cut(s) 51, 451
BaeGI GKGCMC 1 cut(s) 836
Bbv12I GWGCWC 1 cut(s) 536
BbvCI CCTCAGC 1 cut(s) 447
BbvI GCAGC 2 cut(s) 101, 358
BccI CCATC 4 cut(s) 363, 419, 460, 485
BciVI GTATCC 2 cut(s) 328, 396
BfaI CTAG 3 cut(s) 404, 722, 840
BfmI CTRYAG 1 cut(s) 654
BfrI CTTAAG 1 cut(s) 698
BfuI GTATCC 2 cut(s) 328, 396
BisI GCNGC 2 cut(s) 115, 347
BlsI GCNGC 2 cut(s) 116, 348
Bme18I GGWCC 2 cut(s) 51, 451
BmgT120I GGNCC 2 cut(s) 51, 451
BmiI GGNNCC 1 cut(s) 453
BmsI GCATC 1 cut(s) 640
BpmI CTGGAG 2 cut(s) 123, 462
Bpu10I CCTNAGC 2 cut(s) 447, 690
Bsa29I ATCGAT 1 cut(s) 676
BsaXI ACNNNNNCTCC 4 cut(s) 412, 435, 442, 465
Bsc4I CCNNNNNNNGG 2 cut(s) 417, 733
Bse1I ACTGG 3 cut(s) 127, 439, 445
BseCI ATCGAT 1 cut(s) 676
BseGI GGATG 1 cut(s) 374
BseLI CCNNNNNNNGG 2 cut(s) 417, 733
BseMII CTCAG 2 cut(s) 438, 560
BseNI ACTGG 3 cut(s) 127, 439, 445
BseRI GAGGAG 1 cut(s) 485
BseSI GKGCMC 1 cut(s) 836
BseXI GCAGC 2 cut(s) 101, 358
BshVI ATCGAT 1 cut(s) 676
BsiHKAI GWGCWC 1 cut(s) 536
BslFI GGGAC 4 cut(s) 165, 437, 552, 723
BslI CCNNNNNNNGG 2 cut(s) 417, 733
BsmFI GGGAC 4 cut(s) 165, 437, 552, 723
BsmI GAATGC 2 cut(s) 166, 639
Bsp1286I GDGCHC 2 cut(s) 536, 836
Bsp143I GATC 3 cut(s) 673, 677, 845
BspACI CCGC 1 cut(s) 830
BspCNI CTCAG 2 cut(s) 439, 559
BspDI ATCGAT 1 cut(s) 676
BspLI GGNNCC 1 cut(s) 453
BspPI GGATC 1 cut(s) 853
BspTI CTTAAG 1 cut(s) 698
BsrI ACTGG 3 cut(s) 127, 439, 445
BssMI GATC 3 cut(s) 673, 677, 845
Bst4CI ACNGT 1 cut(s) 428
BstAFI CTTAAG 1 cut(s) 698
BstC8I GCNNGC 4 cut(s) 597, 639, 828, 832
BstDEI CTNAG 4 cut(s) 447, 546, 690, 787
BstF5I GGATG 1 cut(s) 374
BstKTI GATC 3 cut(s) 676, 680, 848
BstMBI GATC 3 cut(s) 673, 677, 845
BstMWI GCNNNNNNNGC 1 cut(s) 836
BstSFI CTRYAG 1 cut(s) 654
BstSLI GKGCMC 1 cut(s) 836
BstV1I GCAGC 2 cut(s) 101, 358
BstX2I RGATCY 1 cut(s) 845
BstYI RGATCY 1 cut(s) 845
Bsu15I ATCGAT 1 cut(s) 676
BsuI GTATCC 2 cut(s) 328, 396
BsuTUI ATCGAT 1 cut(s) 676
BtsCI GGATG 1 cut(s) 374
BtsI GCAGTG 2 cut(s) 648, 834
BtsIMutI CAGTG 3 cut(s) 120, 648, 834
Cac8I GCNNGC 4 cut(s) 597, 639, 828, 832
CaiI CAGNNNCTG 1 cut(s) 647
Cfr13I GGNCC 2 cut(s) 51, 451
ClaI ATCGAT 1 cut(s) 676
Csp6I GTAC 1 cut(s) 141
CviAII CATG 4 cut(s) 262, 285, 523, 781
CviJI RGCY 5 cut(s) 57, 407, 446, 519, 760
CviKI_1 RGCY 5 cut(s) 57, 407, 446, 519, 760
CviQI GTAC 1 cut(s) 141
DdeI CTNAG 4 cut(s) 447, 546, 690, 787
DpnI GATC 3 cut(s) 675, 679, 847
DpnII GATC 3 cut(s) 673, 677, 845
DraI TTTAAA 1 cut(s) 168
Eco32I GATATC 1 cut(s) 295
Eco47I GGWCC 2 cut(s) 51, 451
Eco57I CTGAAG 1 cut(s) 215
EcoO109I RGGNCCY 1 cut(s) 451
EcoRV GATATC 1 cut(s) 295
FaeI CATG 4 cut(s) 265, 288, 526, 784
FaqI GGGAC 4 cut(s) 165, 437, 552, 723
FatI CATG 4 cut(s) 261, 284, 522, 780
FauI CCCGC 1 cut(s) 823
Fnu4HI GCNGC 2 cut(s) 115, 347
FokI GGATG 1 cut(s) 381
Fsp4HI GCNGC 2 cut(s) 115, 347
FspBI CTAG 3 cut(s) 404, 722, 840
GluI GCNGC 2 cut(s) 115, 347
GsuI CTGGAG 2 cut(s) 123, 462
Hin1II CATG 4 cut(s) 265, 288, 526, 784
HinfI GANTC 3 cut(s) 68, 215, 620
HphI GGTGA 1 cut(s) 23
Hpy166II GTNNAC 1 cut(s) 206
Hpy188I TCNGA 3 cut(s) 195, 558, 682
Hpy188III TCNNGA 4 cut(s) 86, 157, 624, 722
Hpy8I GTNNAC 1 cut(s) 206
HpyAV CCTTC 1 cut(s) 190
HpyCH4III ACNGT 1 cut(s) 428
HpyCH4V TGCA 5 cut(s) 284, 306, 346, 599, 637
HpyF10VI GCNNNNNNNGC 1 cut(s) 836
HpyF3I CTNAG 4 cut(s) 447, 546, 690, 787
Hsp92II CATG 4 cut(s) 265, 288, 526, 784
Kzo9I GATC 3 cut(s) 673, 677, 845
LmnI GCTCC 2 cut(s) 443, 472
LpnPI CCDG 9 cut(s) 67, 87, 108, 123, 420, 426, 468, 533, 609
Lsp1109I GCAGC 2 cut(s) 101, 358
LweI GCATC 1 cut(s) 640
MaeI CTAG 3 cut(s) 404, 722, 840
MaeIII GTNAC 2 cut(s) 422, 643
MalI GATC 3 cut(s) 675, 679, 847
MboI GATC 3 cut(s) 673, 677, 845
MboII GAAGA 8 cut(s) 74, 77, 238, 247, 500, 593, 629, 683
MflI RGATCY 1 cut(s) 845
MhlI GDGCHC 2 cut(s) 536, 836
MluCI AATT 5 cut(s) 93, 184, 230, 608, 729
MlyI GAGTC 1 cut(s) 224
MnlI CCTC 6 cut(s) 98, 442, 463, 558, 727, 836
MseI TTAA 2 cut(s) 167, 699
MslI CAYNNNNRTG 1 cut(s) 527
MspCI CTTAAG 1 cut(s) 698
Mva1269I GAATGC 2 cut(s) 166, 639
MwoI GCNNNNNNNGC 1 cut(s) 836
NdeII GATC 3 cut(s) 673, 677, 845
NlaIII CATG 4 cut(s) 265, 288, 526, 784
NlaIV GGNNCC 1 cut(s) 453
NmuCI GTSAC 2 cut(s) 422, 643
PctI GAATGC 2 cut(s) 166, 639
PfeI GAWTC 2 cut(s) 68, 620
PkrI GCNGC 2 cut(s) 116, 348
PleI GAGTC 1 cut(s) 223
PpsI GAGTC 1 cut(s) 223
PpuMI RGGWCCY 1 cut(s) 451
Psp5II RGGWCCY 1 cut(s) 451
PspN4I GGNNCC 1 cut(s) 453
PspPI GGNCC 2 cut(s) 51, 451
PspPPI RGGWCCY 1 cut(s) 451
PstNI CAGNNNCTG 1 cut(s) 647
PsuI RGATCY 1 cut(s) 845
RsaI GTAC 1 cut(s) 142
RsaNI GTAC 1 cut(s) 141
RseI CAYNNNNRTG 1 cut(s) 527
SaqAI TTAA 2 cut(s) 167, 699
SatI GCNGC 2 cut(s) 115, 347
Sau3AI GATC 3 cut(s) 673, 677, 845
Sau96I GGNCC 2 cut(s) 51, 451
SchI GAGTC 1 cut(s) 224
SduI GDGCHC 2 cut(s) 536, 836
SetI ASST 6 cut(s) 59, 409, 448, 453, 552, 667
SfaNI GCATC 1 cut(s) 640
SfcI CTRYAG 1 cut(s) 654
SinI GGWCC 2 cut(s) 51, 451
SmiMI CAYNNNNRTG 1 cut(s) 527
SmlI CTYRAG 1 cut(s) 698
SmoI CTYRAG 1 cut(s) 698
Sse9I AATT 5 cut(s) 93, 184, 230, 608, 729
SsiI CCGC 1 cut(s) 830
SspMI CTAG 3 cut(s) 404, 722, 840
TaaI ACNGT 1 cut(s) 428
TaqI TCGA 2 cut(s) 156, 676
TasI AATT 5 cut(s) 93, 184, 230, 608, 729
TfiI GAWTC 2 cut(s) 68, 620
Tru1I TTAA 2 cut(s) 167, 699
Tru9I TTAA 2 cut(s) 167, 699
TscAI CASTG 3 cut(s) 127, 648, 841
TseFI GTSAC 2 cut(s) 422, 643
TseI GCWGC 2 cut(s) 114, 346
Tsp45I GTSAC 2 cut(s) 422, 643
TspDTI ATGAA 8 cut(s) 30, 281, 339, 501, 594, 684, 769, 810
TspGWI ACGGA 1 cut(s) 105
TspRI CASTG 3 cut(s) 127, 648, 841
Vha464I CTTAAG 1 cut(s) 698
VpaK11BI GGWCC 2 cut(s) 51, 451
XbaI TCTAGA 1 cut(s) 721
XspI CTAG 3 cut(s) 404, 722, 840
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.