Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0000261

Physical Location & Seq

Genomic Coordinates Forward (+)

23242177 .. 23242665

Gene Structure 489 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G228600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGAACTATAATGAGGAGATTAACTGTGATGACGATATTAACTGTGAAGCGGAGATTAACTGTGATGAAGATATTAACTGTGATGAGGAATCAACTGACGTTGGAACAGAGGAAGACGCTTATTCAAGGCCTGTTGACCAAATCTCAACAAACAAACAAACAGATCAGTCTTATTCCTCACCACGAAATCGAAGACAACATGGAGGTTTAAGTGTTGCGTTAGATGAAATTCCTGCATCATTCGTGGAAATGATAAAAGCTTCAAATGAGCAAACGCGAGTCCTATGTGAATCACTGCAACCCAAAGGTAACGAAGCAGGTGAGCTGTACCGTGAGGTTAAACCTATGGGGCTTTCTGTTACGGATCGAGTTAAAGCATTAAGACTGCTTGTGGCTAATCCTTTTTATGCTGAACTCTTCCTTACCTTAGATAATGAAGAGAAATTGGAATTTGTTAAGCAACTCATTGATGAATCATCTAAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000123 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006325 GO:0006338 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0031248 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0051276 GO:0070013 GO:0071704 GO:0071840 GO:1901564 GO:1902493 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MRG Tudor-knot

Protein Analysis

163

Amino Acids

18.35

Weight (kDa)

4.32

Isoelectric Point (pI)

54.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000261)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g18411 FvH4_1g22560 FvH4_1g24290 FvH4_1g24290 FvH4_1g24290 FvH4_1g29434 FvH4_2g04031 FvH4_2g04811 FvH4_2g07610 FvH4_2g09412 FvH4_3g15552 FvH4_3g30720 FvH4_4g05810 FvH4_4g09541 FvH4_4g15171 FvH4_6g09145 FvH4_6g49541 FvH4_7g00320 FvH4_7g11552
malus_domestica	MD00G1072400.v1.1 MD01G1188100.v1.1 MD07G1132000.v1.1 MD08G1190700.v1.1 MD10G1011200.v1.1 MD14G1164100.v1.1 MD15G1289200.v1.1 MD15G1289300.v1.1 MD17G1245100.v1.1
prunus_persica	Prupe.6G228600_v2.0.a1
pyrus_communis	pycom01g07070 pycom02g06890 pycom02g06900 pycom02g13930 pycom04g07470 pycom04g11770 pycom04g21930 pycom05g08520 pycom06g04490 pycom06g09560 pycom07g03750 pycom08g08760 pycom08g13660 pycom09g11520 pycom09g14250 pycom09g14770 pycom10g00720 pycom10g01290 pycom10g10480 pycom10g15700 pycom12420g00130 pycom12g05380 pycom12g08750 pycom13g19010 pycom13g29080 pycom14g06210 pycom14g13680 pycom14g19850 pycom15g22070 pycom15g23440 pycom15g24950 pycom15g25280 pycom16g11100 pycom16g17080 pycom16g26310 pycom17g15650 pycom17g15670 pycom17g20370
rosa_chinensis	RchiOBHm_Chr1g0373591 RchiOBHm_Chr2g0105551 RchiOBHm_Chr2g0106711 RchiOBHm_Chr2g0106721 RchiOBHm_Chr7g0219611
rosa_laevigata	RLG00000013773 RLG00000017436 RLG00000017533
rosa_multiflora	Rmu_co8001842.1_g000001 Rmu_co8158450.1_g000001 Rmu_sc0000516.1_g000067 Rmu_sc0000566.1_g000009 Rmu_sc0000965.1_g000025 Rmu_sc0001718.1_g000001 Rmu_sc0001719.1_g000020 Rmu_sc0001822.1_g000025 Rmu_sc0002219.1_g000003 Rmu_sc0002460.1_g000059 Rmu_sc0002757.1_g000001 Rmu_sc0002860.1_g000001 Rmu_sc0004531.1_g000001 Rmu_sc0005558.1_g000003 Rmu_sc0011218.1_g000001 Rmu_sc0011998.1_g000003 Rmu_sc0015560.1_g000002 Rmu_sc0015560.1_g000003
rosa_roxburghii	Rroxscaffold_1G00004200 Rroxscaffold_1G00026570 Rroxscaffold_1G00040370 Rroxscaffold_1G00044120 Rroxscaffold_1G00049590 Rroxscaffold_1G00059030 Rroxscaffold_2G00108440 Rroxscaffold_2G00108850 Rroxscaffold_2G00130680 Rroxscaffold_2G00132980 Rroxscaffold_2G00136860 Rroxscaffold_3G00218610 Rroxscaffold_4G00309940 Rroxscaffold_6G00405560
rosa_rugosa	Rorug02G0138000 Rorug02G0138100 Rorug02G0138100 Rorug06G0154000
rosa_samantha	Rh1AG121500 Rh1CG116300 Rh2AG189000 Rh2AG509600 Rh2BG200200 Rh2CG194100 Rh2DG195300 Rh5AG114400 Rh5DG488800
rosa_wichuraiana	Rw0G022020 Rw1G023650 Rw1G026380 Rw1G034750 Rw1G040770 Rw2G014870 Rw2G016560 Rw4G031190 Rw5G026570 Rw6G003020 Rw6G012060 Rw7G014300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	308
Acc36I	ACCTGC	1 cut(s)	308
AccII	CGCG	1 cut(s)	277
AciI	CCGC	1 cut(s)	50
AclWI	GGATC	1 cut(s)	372
AcsI	RAATTY	2 cut(s)	228, 449
AfaI	GTAC	1 cut(s)	329
AgsI	TTSAA	2 cut(s)	126, 264
AluBI	AGCT	2 cut(s)	260, 325
AluI	AGCT	2 cut(s)	260, 325
AlwI	GGATC	1 cut(s)	372
AoxI	GGCC	1 cut(s)	128
ApoI	RAATTY	2 cut(s)	228, 449
AsuHPI	GGTGA	2 cut(s)	171, 332
BbsI	GAAGAC	2 cut(s)	120, 199
BfuAI	ACCTGC	1 cut(s)	308
BmsI	GCATC	1 cut(s)	245
BpiI	GAAGAC	2 cut(s)	120, 199
BseRI	GAGGAG	1 cut(s)	29
Bsh1236I	CGCG	1 cut(s)	277
BshFI	GGCC	1 cut(s)	130
BsnI	GGCC	1 cut(s)	130
Bsp143I	GATC	2 cut(s)	163, 364
BspACI	CCGC	1 cut(s)	50
BspANI	GGCC	1 cut(s)	130
BspFNI	CGCG	1 cut(s)	277
BspMI	ACCTGC	1 cut(s)	308
BspPI	GGATC	1 cut(s)	372
BssMI	GATC	2 cut(s)	163, 364
Bst4CI	ACNGT	5 cut(s)	26, 44, 62, 80, 332
Bst6I	CTCTTC	2 cut(s)	422, 432
BstDEI	CTNAG	2 cut(s)	427, 480
BstFNI	CGCG	1 cut(s)	277
BstKTI	GATC	2 cut(s)	166, 367
BstMBI	GATC	2 cut(s)	163, 364
BstUI	CGCG	1 cut(s)	277
BstV2I	GAAGAC	2 cut(s)	120, 199
BsuRI	GGCC	1 cut(s)	130
BtsI	GCAGTG	1 cut(s)	293
BtsIMutI	CAGTG	1 cut(s)	293
BveI	ACCTGC	1 cut(s)	308
CseI	GACGC	1 cut(s)	125
Csp6I	GTAC	1 cut(s)	328
CviAII	CATG	1 cut(s)	200
CviJI	RGCY	5 cut(s)	130, 260, 325, 352, 395
CviKI_1	RGCY	5 cut(s)	130, 260, 325, 352, 395
CviQI	GTAC	1 cut(s)	328
DdeI	CTNAG	2 cut(s)	427, 480
DpnI	GATC	2 cut(s)	165, 366
DpnII	GATC	2 cut(s)	163, 364
Eam1104I	CTCTTC	2 cut(s)	422, 432
EarI	CTCTTC	2 cut(s)	422, 432
Eco147I	AGGCCT	1 cut(s)	130
FaeI	CATG	1 cut(s)	203
FaiI	YATR	5 cut(s)	9, 201, 286, 347, 408
FatI	CATG	1 cut(s)	199
HaeIII	GGCC	1 cut(s)	130
HgaI	GACGC	1 cut(s)	125
Hin1II	CATG	1 cut(s)	203
HincII	GTYRAC	1 cut(s)	136
HindII	GTYRAC	1 cut(s)	136
HindIII	AAGCTT	1 cut(s)	258
HinfI	GANTC	4 cut(s)	89, 279, 290, 473
HphI	GGTGA	2 cut(s)	171, 332
Hpy166II	GTNNAC	1 cut(s)	136
Hpy8I	GTNNAC	1 cut(s)	136
HpyCH4III	ACNGT	5 cut(s)	26, 44, 62, 80, 332
HpyCH4IV	ACGT	1 cut(s)	99
HpyCH4V	TGCA	2 cut(s)	236, 298
HpyF3I	CTNAG	2 cut(s)	427, 480
HpySE526I	ACGT	1 cut(s)	99
Hsp92II	CATG	1 cut(s)	203
Kzo9I	GATC	2 cut(s)	163, 364
LpnPI	CCDG	3 cut(s)	144, 246, 303
LweI	GCATC	1 cut(s)	245
MaeII	ACGT	1 cut(s)	99
MaeIII	GTNAC	2 cut(s)	308, 358
MalI	GATC	2 cut(s)	165, 366
MboI	GATC	2 cut(s)	163, 364
MboII	GAAGA	5 cut(s)	80, 125, 204, 409, 449
MluCI	AATT	3 cut(s)	228, 443, 449
MlyI	GAGTC	1 cut(s)	288
MmeI	TCCRAC	1 cut(s)	82
MnlI	CCTC	6 cut(s)	7, 79, 103, 187, 197, 328
MseI	TTAA	9 cut(s)	21, 39, 57, 75, 209, 339, 372, 380, 456
MvnI	CGCG	1 cut(s)	277
NdeII	GATC	2 cut(s)	163, 364
NlaIII	CATG	1 cut(s)	203
PaqCI	CACCTGC	1 cut(s)	308
PceI	AGGCCT	1 cut(s)	130
PfeI	GAWTC	3 cut(s)	89, 290, 473
PleI	GAGTC	1 cut(s)	287
PpsI	GAGTC	1 cut(s)	287
RsaI	GTAC	1 cut(s)	329
RsaNI	GTAC	1 cut(s)	328
SaqAI	TTAA	9 cut(s)	21, 39, 57, 75, 209, 339, 372, 380, 456
Sau3AI	GATC	2 cut(s)	163, 364
SchI	GAGTC	1 cut(s)	288
SetI	ASST	9 cut(s)	102, 208, 262, 310, 322, 327, 339, 346, 428
SfaNI	GCATC	1 cut(s)	245
Sse9I	AATT	3 cut(s)	228, 443, 449
SseBI	AGGCCT	1 cut(s)	130
SsiI	CCGC	1 cut(s)	50
StuI	AGGCCT	1 cut(s)	130
TaaI	ACNGT	5 cut(s)	26, 44, 62, 80, 332
TaiI	ACGT	1 cut(s)	102
TaqI	TCGA	2 cut(s)	190, 367
TasI	AATT	3 cut(s)	228, 443, 449
TfiI	GAWTC	3 cut(s)	89, 290, 473
Tru1I	TTAA	9 cut(s)	21, 39, 57, 75, 209, 339, 372, 380, 456
Tru9I	TTAA	9 cut(s)	21, 39, 57, 75, 209, 339, 372, 380, 456
TscAI	CASTG	1 cut(s)	300
TspDTI	ATGAA	5 cut(s)	17, 81, 240, 450, 486
TspGWI	ACGGA	1 cut(s)	377
TspRI	CASTG	1 cut(s)	300
XapI	RAATTY	2 cut(s)	228, 449

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.