Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000261

Physical Location & Seq

Genomic Coordinates Reverse (-)

12134317 .. 12135922

Gene Structure 1606 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0138000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1494 bp

ATGTTTCCCTTCAAGAATTTCAGTCTTAAAGACATACCAACAACTCCGGCCGCCTTGTTCTCAGCCTACGCCTCCTTCACCGCATTTGTGCAGTTGGTTCGAGCCATGGTCGAGCAAATCCTTCCCAAGCCGCTCCGGTTATACATTTTCAACAAACTCAAGGACTACTTCTTCCCTTCTCGGAGCTCCGAAGACATGACTCTAGTGATCAACCTATACTCTGCCTCTCGGATGACTGAAAACCAAGTCTATGACGCCGCCGAGGTCTATCTTGCAACCAAGGTCAAACCCTCCGACAAGCTCCTCCTAGTGAGCAAAACCCATGACCAGAAGACCATCAGTTTCGCCAATGCGAAAGCTGCCACCATCATCGACACATTTGAGGACATTGAGCTCAAGTGGAGCCATATCTGCCCGGTTAAGAGATCAGATGCTGTTCAAAATGACAATGAGCCACAAAAACAGTGCTTTACGTTGAGGTTTGGCGCCAAACACAAAGAAAAAGTGATGGAGTGTTACTTGCCGTATGTGCTTGCTAAAGCCAAGGACATTAAGCAAGAGGAGAAGTTGTTGAAGATTTTCAGCTGCGGCGGCAATAGCTCTCGTTCGATAGGCCTTGAGCACCCTGCAACTTTTGAGACAATGGCGATGGATCCGGAGCAGAAGAAAATGGTTATGGATGATTTGGATCGGTTTGTGAGGAGGAGGGACTTTTACAAGAGGGTTGGCAAGGCTTGGAAGAGAGGGTATTTGTTGTACGGTCCTCCTGGAACAGGCAAATCAAGCTTGATTGCAGCCATGGCTAATCATCTCAAGTTTGACATATATGATTTGGAGCTTTCTAGTATTTCTAGGAACTCGGACTTGAGGAGTGTGCTTCTATCTACTTCAAATCGTTCTATTCTGGTAATTGAGGACATTGATTGCAGTGTGGAAGCCGAAAATCGGGTGGCAGCTGAGAAGTTTATGGGGAGTAGATACAATAGACCATCACAAATGAAGTTTACACTCTCAGGTCTACTTAATGTCATTGATGGTCTGTGGTCATGTGTTGGAGATGAGAGGATCATCATCTTCACCACTAACCACAAGGATCGGCTAGACCCGGCATTGTTGCGGCCTGGACGAATGGATGTGCACATTCACATGTCCTATTGTACTCCAAGCGGGTTCAGGATCTTGGCCTCTAACTACCTTGGCATTCATGAGAGCAACCCTCATCGGCTCTGTGGAGAAATTGAAGGGTTGATAGAGAGCACAGAGGTCACCCCCGCACAGGTTGCTGAGGAGCTTATGCAGAGTGATGATGCTGATGTTGCTCTTGAAGGGCTTGTCAATTTTCTCAAATGCAAGATAGAGGTTGATAGCAAAAAAACAAAGGATGAAGGGACTAATAAAGCAGAGAGTTTCGAAGAAGAGTTGGAACAACTTGATAAAGGTACTCACCCAATTTTTTCCAAGAGTAGTGCTGCGTTTTACAAAGATGTTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000123 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006325 GO:0006338 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0031248 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0051276 GO:0070013 GO:0071704 GO:0071840 GO:1901564 GO:1902493 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MRG Tudor-knot

Protein Analysis

497

Amino Acids

56.3

Weight (kDa)

6.62

Isoelectric Point (pI)

51.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_assoc	PF14363	41 - 138	6.6e-18	Domain associated at C-terminal with AAA
AAA	PF00004	250 - 384	6.7e-20	ATPase family associated with various cellular activities (AAA)
RuvB_N	PF05496	250 - 308	7e-06	Holliday junction DNA helicase RuvB P-loop domain
AAA_lid_At3g28540	PF25568	386 - 458	2.3e-21	At3g28540-like, AAA+ ATPase lid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000261)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g18411 FvH4_1g22560 FvH4_1g24290 FvH4_1g24290 FvH4_1g24290 FvH4_1g29434 FvH4_2g04031 FvH4_2g04811 FvH4_2g07610 FvH4_2g09412 FvH4_3g15552 FvH4_3g30720 FvH4_4g05810 FvH4_4g09541 FvH4_4g15171 FvH4_6g09145 FvH4_6g49541 FvH4_7g00320 FvH4_7g11552
malus_domestica	MD00G1072400.v1.1 MD01G1188100.v1.1 MD07G1132000.v1.1 MD08G1190700.v1.1 MD10G1011200.v1.1 MD14G1164100.v1.1 MD15G1289200.v1.1 MD15G1289300.v1.1 MD17G1245100.v1.1
prunus_persica	Prupe.6G228600_v2.0.a1
pyrus_communis	pycom01g07070 pycom02g06890 pycom02g06900 pycom02g13930 pycom04g07470 pycom04g11770 pycom04g21930 pycom05g08520 pycom06g04490 pycom06g09560 pycom07g03750 pycom08g08760 pycom08g13660 pycom09g11520 pycom09g14250 pycom09g14770 pycom10g00720 pycom10g01290 pycom10g10480 pycom10g15700 pycom12420g00130 pycom12g05380 pycom12g08750 pycom13g19010 pycom13g29080 pycom14g06210 pycom14g13680 pycom14g19850 pycom15g22070 pycom15g23440 pycom15g24950 pycom15g25280 pycom16g11100 pycom16g17080 pycom16g26310 pycom17g15650 pycom17g15670 pycom17g20370
rosa_chinensis	RchiOBHm_Chr1g0373591 RchiOBHm_Chr2g0105551 RchiOBHm_Chr2g0106711 RchiOBHm_Chr2g0106721 RchiOBHm_Chr7g0219611
rosa_laevigata	RLG00000013773 RLG00000017436 RLG00000017533
rosa_multiflora	Rmu_co8001842.1_g000001 Rmu_co8158450.1_g000001 Rmu_sc0000516.1_g000067 Rmu_sc0000566.1_g000009 Rmu_sc0000965.1_g000025 Rmu_sc0001718.1_g000001 Rmu_sc0001719.1_g000020 Rmu_sc0001822.1_g000025 Rmu_sc0002219.1_g000003 Rmu_sc0002460.1_g000059 Rmu_sc0002757.1_g000001 Rmu_sc0002860.1_g000001 Rmu_sc0004531.1_g000001 Rmu_sc0005558.1_g000003 Rmu_sc0011218.1_g000001 Rmu_sc0011998.1_g000003 Rmu_sc0015560.1_g000002 Rmu_sc0015560.1_g000003
rosa_roxburghii	Rroxscaffold_1G00004200 Rroxscaffold_1G00026570 Rroxscaffold_1G00040370 Rroxscaffold_1G00044120 Rroxscaffold_1G00049590 Rroxscaffold_1G00059030 Rroxscaffold_2G00108440 Rroxscaffold_2G00108850 Rroxscaffold_2G00130680 Rroxscaffold_2G00132980 Rroxscaffold_2G00136860 Rroxscaffold_3G00218610 Rroxscaffold_4G00309940 Rroxscaffold_6G00405560
rosa_rugosa	Rorug02G0138000 Rorug02G0138100 Rorug02G0138100 Rorug06G0154000
rosa_samantha	Rh1AG121500 Rh1CG116300 Rh2AG189000 Rh2AG509600 Rh2BG200200 Rh2CG194100 Rh2DG195300 Rh5AG114400 Rh5DG488800
rosa_wichuraiana	Rw0G022020 Rw1G023650 Rw1G026380 Rw1G034750 Rw1G040770 Rw2G014870 Rw2G016560 Rw4G031190 Rw5G026570 Rw6G003020 Rw6G012060 Rw7G014300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	485
AccBSI	CCGCTC	1 cut(s)	133
AccI	GTMKAC	1 cut(s)	1018
AccIII	TCCGGA	1 cut(s)	655
AciI	CCGC	9 cut(s)	51, 81, 131, 258, 588, 591, 1117, 1167, 1272
AclWI	GGATC	6 cut(s)	647, 660, 696, 1073, 1101, 1184
AcoI	YGGCCR	1 cut(s)	48
AcsI	RAATTY	1 cut(s)	16
AcyI	GRCGYC	2 cut(s)	255, 486
AfaI	GTAC	3 cut(s)	758, 1159, 1441
AfiI	CCNNNNNNNGG	3 cut(s)	773, 945, 1276
AflIII	ACRYGT	1 cut(s)	1146
AgsI	TTSAA	7 cut(s)	13, 151, 440, 574, 891, 1241, 1325
AjnI	CCWGG	2 cut(s)	766, 1120
Alw21I	GWGCWC	5 cut(s)	188, 396, 624, 1140, 1259
Alw26I	GTCTC	1 cut(s)	632
Alw44I	GTGCAC	1 cut(s)	1136
AlwI	GGATC	6 cut(s)	647, 660, 696, 1073, 1101, 1184
AlwNI	CAGNNNCTG	1 cut(s)	434
Aor13HI	TCCGGA	1 cut(s)	655
AoxI	GGCC	4 cut(s)	48, 613, 1118, 1182
ApaLI	GTGCAC	1 cut(s)	1136
ApeKI	GCWGC	5 cut(s)	359, 585, 794, 953, 1469
ApoI	RAATTY	1 cut(s)	16
Asp700I	GAANNNNTTC	1 cut(s)	578
AspLEI	GCGC	1 cut(s)	488
AspS9I	GGNCC	1 cut(s)	761
AsuC2I	CCSGG	2 cut(s)	416, 1106
AsuHPI	GGTGA	4 cut(s)	70, 1069, 1258, 1436
AsuII	TTCGAA	1 cut(s)	1410
AvaII	GGWCC	1 cut(s)	761
BaeGI	GKGCMC	1 cut(s)	1140
BamHI	GGATCC	1 cut(s)	652
BanI	GGYRCC	1 cut(s)	485
BanII	GRGCYC	2 cut(s)	188, 396
BbsI	GAAGAC	2 cut(s)	198, 338
Bbv12I	GWGCWC	5 cut(s)	188, 396, 624, 1140, 1259
BbvCI	CCTCAGC	1 cut(s)	1284
BbvI	GCAGC	5 cut(s)	346, 572, 806, 965, 1456
BccI	CCATC	6 cut(s)	344, 374, 502, 643, 997, 1028
BceAI	ACGGC	1 cut(s)	508
BcgI	CGANNNNNNTGC	2 cut(s)	80, 114
BciT130I	CCWGG	2 cut(s)	768, 1122
BclI	TGATCA	1 cut(s)	207
BcnI	CCSGG	2 cut(s)	416, 1106
BcoDI	GTCTC	1 cut(s)	632
BfaI	CTAG	5 cut(s)	203, 308, 843, 852, 1100
BfoI	RGCGCY	1 cut(s)	489
Bme1390I	CCNGG	4 cut(s)	416, 768, 1106, 1122
Bme18I	GGWCC	1 cut(s)	761
BmgT120I	GGNCC	1 cut(s)	761
BmiI	GGNNCC	3 cut(s)	404, 487, 654
BmrFI	CCNGG	4 cut(s)	416, 768, 1106, 1122
BmsI	GCATC	2 cut(s)	421, 1297
BpiI	GAAGAC	2 cut(s)	198, 338
BplI	GAGNNNNNCTC	2 cut(s)	1201, 1233
Bpu10I	CCTNAGC	1 cut(s)	1284
Bpu14I	TTCGAA	1 cut(s)	1410
BpuEI	CTTGAG	5 cut(s)	143, 380, 638, 797, 886
BpuMI	CCSGG	2 cut(s)	416, 1106
BsaBI	GATNNNNATC	2 cut(s)	687, 1070
BsaHI	GRCGYC	2 cut(s)	255, 486
BsaJI	CCNNGG	6 cut(s)	105, 261, 279, 543, 798, 1195
BsaWI	WCCGGW	2 cut(s)	135, 655
BsaXI	ACNNNNNCTCC	2 cut(s)	554, 584
Bsc4I	CCNNNNNNNGG	3 cut(s)	773, 945, 1276
Bse8I	GATNNNNATC	2 cut(s)	687, 1070
BseAI	TCCGGA	1 cut(s)	655
BseBI	CCWGG	2 cut(s)	768, 1122
BseDI	CCNNGG	6 cut(s)	105, 261, 279, 543, 798, 1195
BseGI	GGATG	4 cut(s)	237, 685, 1138, 1387
BseJI	GATNNNNATC	2 cut(s)	687, 1070
BseLI	CCNNNNNNNGG	3 cut(s)	773, 945, 1276
BseMII	CTCAG	4 cut(s)	75, 948, 1026, 1275
BseRI	GAGGAG	6 cut(s)	293, 575, 715, 718, 883, 1301
BseSI	GKGCMC	1 cut(s)	1140
BseX3I	CGGCCG	1 cut(s)	48
BseXI	GCAGC	5 cut(s)	346, 572, 806, 965, 1456
BsgI	GTGCAG	1 cut(s)	110
Bsh1285I	CGRYCG	1 cut(s)	51
BshFI	GGCC	4 cut(s)	50, 615, 1120, 1184
BshNI	GGYRCC	1 cut(s)	485
BsiEI	CGRYCG	1 cut(s)	51
BsiHKAI	GWGCWC	5 cut(s)	188, 396, 624, 1140, 1259
BsiSI	CCGG	5 cut(s)	47, 136, 416, 656, 1106
BslFI	GGGAC	2 cut(s)	722, 1402
BslI	CCNNNNNNNGG	3 cut(s)	773, 945, 1276
BsmAI	GTCTC	1 cut(s)	632
BsmFI	GGGAC	2 cut(s)	722, 1402
BsmI	GAATGC	1 cut(s)	1200
BsnI	GGCC	4 cut(s)	50, 615, 1120, 1184
Bsp119I	TTCGAA	1 cut(s)	1410
Bsp1286I	GDGCHC	5 cut(s)	188, 396, 624, 1140, 1259
Bsp13I	TCCGGA	1 cut(s)	655
Bsp143I	GATC	7 cut(s)	207, 425, 652, 688, 1065, 1093, 1176
Bsp19I	CCATGG	2 cut(s)	105, 798
BspACI	CCGC	9 cut(s)	51, 81, 131, 258, 588, 591, 1117, 1167, 1272
BspANI	GGCC	4 cut(s)	50, 615, 1120, 1184
BspCNI	CTCAG	4 cut(s)	74, 949, 1025, 1276
BspEI	TCCGGA	1 cut(s)	655
BspHI	TCATGA	1 cut(s)	1204
BspLI	GGNNCC	3 cut(s)	404, 487, 654
BspPI	GGATC	6 cut(s)	647, 660, 696, 1073, 1101, 1184
BspT104I	TTCGAA	1 cut(s)	1410
BspT107I	GGYRCC	1 cut(s)	485
BsrBI	CCGCTC	1 cut(s)	133
BssECI	CCNNGG	6 cut(s)	105, 261, 279, 543, 798, 1195
BssMI	GATC	7 cut(s)	207, 425, 652, 688, 1065, 1093, 1176
BssNI	GRCGYC	2 cut(s)	255, 486
BssT1I	CCWWGG	5 cut(s)	105, 279, 543, 798, 1195
Bst2UI	CCWGG	2 cut(s)	768, 1122
Bst4CI	ACNGT	2 cut(s)	465, 761
Bst6I	CTCTTC	2 cut(s)	734, 1410
BstACI	GRCGYC	2 cut(s)	255, 486
BstAPI	GCANNNNNTGC	1 cut(s)	1280
BstBI	TTCGAA	1 cut(s)	1410
BstC8I	GCNNGC	1 cut(s)	534
BstDEI	CTNAG	4 cut(s)	61, 957, 1012, 1284
BstDSI	CCRYGG	2 cut(s)	105, 798
BstEII	GGTNACC	1 cut(s)	1264
BstENI	CCTNNNNNAGG	1 cut(s)	771
BstF5I	GGATG	4 cut(s)	237, 685, 1138, 1387
BstH2I	RGCGCY	1 cut(s)	489
BstHHI	GCGC	1 cut(s)	488
BstKTI	GATC	7 cut(s)	210, 428, 655, 691, 1068, 1096, 1179
BstMAI	GTCTC	1 cut(s)	632
BstMBI	GATC	7 cut(s)	207, 425, 652, 688, 1065, 1093, 1176
BstMCI	CGRYCG	1 cut(s)	51
BstMWI	GCNNNNNNNGC	9 cut(s)	359, 411, 529, 591, 597, 783, 800, 1280, 1316
BstNI	CCWGG	2 cut(s)	768, 1122
BstNSI	RCATGY	1 cut(s)	1150
BstPI	GGTNACC	1 cut(s)	1264
BstSCI	CCNGG	4 cut(s)	414, 766, 1104, 1120
BstSLI	GKGCMC	1 cut(s)	1140
BstV1I	GCAGC	5 cut(s)	346, 572, 806, 965, 1456
BstV2I	GAAGAC	2 cut(s)	198, 338
BstX2I	RGATCY	2 cut(s)	652, 1176
BstYI	RGATCY	2 cut(s)	652, 1176
BstZI	CGGCCG	1 cut(s)	48
BsuRI	GGCC	4 cut(s)	50, 615, 1120, 1184
BtgI	CCRYGG	2 cut(s)	105, 798
BtgZI	GCGATG	1 cut(s)	662
BtsCI	GGATG	4 cut(s)	237, 685, 1138, 1387
BtsI	GCAGTG	1 cut(s)	934
BtsIMutI	CAGTG	2 cut(s)	470, 934
Cac8I	GCNNGC	1 cut(s)	534
CaiI	CAGNNNCTG	1 cut(s)	434
CciI	TCATGA	1 cut(s)	1204
CfoI	GCGC	1 cut(s)	488
Cfr13I	GGNCC	1 cut(s)	761
CseI	GACGC	1 cut(s)	263
Csp6I	GTAC	3 cut(s)	757, 1158, 1440
CviAII	CATG	7 cut(s)	106, 196, 323, 799, 1047, 1147, 1205
CviQI	GTAC	3 cut(s)	757, 1158, 1440
DdeI	CTNAG	4 cut(s)	61, 957, 1012, 1284
DinI	GGCGCC	1 cut(s)	487
DpnI	GATC	7 cut(s)	209, 427, 654, 690, 1067, 1095, 1178
DpnII	GATC	7 cut(s)	207, 425, 652, 688, 1065, 1093, 1176
EaeI	YGGCCR	1 cut(s)	48
EagI	CGGCCG	1 cut(s)	48
Eam1104I	CTCTTC	2 cut(s)	734, 1410
EarI	CTCTTC	2 cut(s)	734, 1410
Ecl136II	GAGCTC	2 cut(s)	186, 394
EclXI	CGGCCG	1 cut(s)	48
Eco130I	CCWWGG	5 cut(s)	105, 279, 543, 798, 1195
Eco147I	AGGCCT	1 cut(s)	615
Eco24I	GRGCYC	2 cut(s)	188, 396
Eco47I	GGWCC	1 cut(s)	761
Eco52I	CGGCCG	1 cut(s)	48
Eco53kI	GAGCTC	2 cut(s)	186, 394
Eco91I	GGTNACC	1 cut(s)	1264
EcoICRI	GAGCTC	2 cut(s)	186, 394
EcoNI	CCTNNNNNAGG	1 cut(s)	771
EcoO65I	GGTNACC	1 cut(s)	1264
EcoRII	CCWGG	2 cut(s)	766, 1120
EcoT14I	CCWWGG	5 cut(s)	105, 279, 543, 798, 1195
EcoT38I	GRGCYC	2 cut(s)	188, 396
EgeI	GGCGCC	1 cut(s)	487
EheI	GGCGCC	1 cut(s)	487
ErhI	CCWWGG	5 cut(s)	105, 279, 543, 798, 1195
FaeI	CATG	7 cut(s)	109, 199, 326, 802, 1050, 1150, 1208
FalI	AAGNNNNNCTT	2 cut(s)	152, 184
FaqI	GGGAC	2 cut(s)	722, 1402
FatI	CATG	7 cut(s)	105, 195, 322, 798, 1046, 1146, 1204
FauI	CCCGC	2 cut(s)	1160, 1279
FbaI	TGATCA	1 cut(s)	207
FblI	GTMKAC	1 cut(s)	1018
FokI	GGATG	4 cut(s)	244, 692, 1145, 1394
FriOI	GRGCYC	2 cut(s)	188, 396
FspBI	CTAG	5 cut(s)	203, 308, 843, 852, 1100
GlaI	GCGC	1 cut(s)	487
HaeII	RGCGCY	1 cut(s)	489
HaeIII	GGCC	4 cut(s)	50, 615, 1120, 1184
HapII	CCGG	5 cut(s)	47, 136, 416, 656, 1106
HgaI	GACGC	1 cut(s)	263
HhaI	GCGC	1 cut(s)	488
Hin1I	GRCGYC	2 cut(s)	255, 486
Hin1II	CATG	7 cut(s)	109, 199, 326, 802, 1050, 1150, 1208
Hin6I	GCGC	1 cut(s)	486
HinP1I	GCGC	1 cut(s)	486
HindIII	AAGCTT	1 cut(s)	784
HinfI	GANTC	1 cut(s)	199
HpaII	CCGG	5 cut(s)	47, 136, 416, 656, 1106
HphI	GGTGA	4 cut(s)	70, 1069, 1258, 1436
Hpy166II	GTNNAC	3 cut(s)	1005, 1019, 1138
Hpy188I	TCNGA	6 cut(s)	183, 190, 231, 295, 430, 862
Hpy188III	TCNNGA	5 cut(s)	13, 656, 1174, 1205, 1322
Hpy8I	GTNNAC	3 cut(s)	1005, 1019, 1138
HpyAV	CCTTC	7 cut(s)	19, 85, 131, 186, 1235, 1319, 1379
HpyCH4III	ACNGT	2 cut(s)	465, 761
HpyCH4IV	ACGT	1 cut(s)	473
HpyCH4V	TGCA	8 cut(s)	91, 275, 629, 794, 927, 1138, 1297, 1350
HpyF10VI	GCNNNNNNNGC	9 cut(s)	359, 411, 529, 591, 597, 783, 800, 1280, 1316
HpyF3I	CTNAG	4 cut(s)	61, 957, 1012, 1284
HpySE526I	ACGT	1 cut(s)	473
Hsp92I	GRCGYC	2 cut(s)	255, 486
Hsp92II	CATG	7 cut(s)	109, 199, 326, 802, 1050, 1150, 1208
HspAI	GCGC	1 cut(s)	486
KasI	GGCGCC	1 cut(s)	485
Kpn2I	TCCGGA	1 cut(s)	655
Ksp22I	TGATCA	1 cut(s)	207
Kzo9I	GATC	7 cut(s)	207, 425, 652, 688, 1065, 1093, 1176
LmnI	GCTCC	8 cut(s)	138, 183, 191, 306, 402, 658, 835, 1288
Lsp1109I	GCAGC	5 cut(s)	346, 572, 806, 965, 1456
LweI	GCATC	2 cut(s)	421, 1297
MaeI	CTAG	5 cut(s)	203, 308, 843, 852, 1100
MaeII	ACGT	1 cut(s)	473
MaeIII	GTNAC	2 cut(s)	515, 1264
MalI	GATC	7 cut(s)	209, 427, 654, 690, 1067, 1095, 1178
MbiI	CCGCTC	1 cut(s)	133
MboI	GATC	7 cut(s)	207, 425, 652, 688, 1065, 1093, 1176
MboII	GAAGA	9 cut(s)	163, 203, 343, 586, 676, 751, 1066, 1424, 1427
MflI	RGATCY	2 cut(s)	652, 1176
MhlI	GDGCHC	5 cut(s)	188, 396, 624, 1140, 1259
MluCI	AATT	5 cut(s)	16, 909, 1236, 1336, 1449
Mly113I	GGCGCC	1 cut(s)	486
MlyI	GAGTC	1 cut(s)	193
MmeI	TCCRAC	3 cut(s)	318, 1033, 1401
MroI	TCCGGA	1 cut(s)	655
MroXI	GAANNNNTTC	1 cut(s)	578
MseI	TTAA	4 cut(s)	27, 420, 552, 1023
MslI	CAYNNNNRTG	1 cut(s)	1145
MspA1I	CMGCKG	2 cut(s)	585, 956
MspI	CCGG	5 cut(s)	47, 136, 416, 656, 1106
MspR9I	CCNGG	4 cut(s)	416, 768, 1106, 1122
Mva1269I	GAATGC	1 cut(s)	1200
MvaI	CCWGG	2 cut(s)	768, 1122
MwoI	GCNNNNNNNGC	9 cut(s)	359, 411, 529, 591, 597, 783, 800, 1280, 1316
NarI	GGCGCC	1 cut(s)	486
NciI	CCSGG	2 cut(s)	416, 1106
NcoI	CCATGG	2 cut(s)	105, 798
NdeII	GATC	7 cut(s)	207, 425, 652, 688, 1065, 1093, 1176
NlaIII	CATG	7 cut(s)	109, 199, 326, 802, 1050, 1150, 1208
NlaIV	GGNNCC	3 cut(s)	404, 487, 654
NmeAIII	GCCGAG	1 cut(s)	286
NmuCI	GTSAC	1 cut(s)	1264
NspI	RCATGY	1 cut(s)	1150
NspV	TTCGAA	1 cut(s)	1410
PagI	TCATGA	1 cut(s)	1204
PceI	AGGCCT	1 cut(s)	615
PciI	ACATGT	1 cut(s)	1146
PctI	GAATGC	1 cut(s)	1200
PdmI	GAANNNNTTC	1 cut(s)	578
PfoI	TCCNGGA	1 cut(s)	766
PleI	GAGTC	1 cut(s)	193
PluTI	GGCGCC	1 cut(s)	489
PpsI	GAGTC	1 cut(s)	193
PscI	ACATGT	1 cut(s)	1146
Psp124BI	GAGCTC	2 cut(s)	188, 396
Psp6I	CCWGG	2 cut(s)	766, 1120
PspEI	GGTNACC	1 cut(s)	1264
PspGI	CCWGG	2 cut(s)	766, 1120
PspN4I	GGNNCC	3 cut(s)	404, 487, 654
PspPI	GGNCC	1 cut(s)	761
PstNI	CAGNNNCTG	1 cut(s)	434
PsuI	RGATCY	2 cut(s)	652, 1176
PvuII	CAGCTG	2 cut(s)	585, 956
RsaI	GTAC	3 cut(s)	758, 1159, 1441
RsaNI	GTAC	3 cut(s)	757, 1158, 1440
RseI	CAYNNNNRTG	1 cut(s)	1145
SacI	GAGCTC	2 cut(s)	188, 396
SaqAI	TTAA	4 cut(s)	27, 420, 552, 1023
Sau3AI	GATC	7 cut(s)	207, 425, 652, 688, 1065, 1093, 1176
Sau96I	GGNCC	1 cut(s)	761
SchI	GAGTC	1 cut(s)	193
ScrFI	CCNGG	4 cut(s)	416, 768, 1106, 1122
SduI	GDGCHC	5 cut(s)	188, 396, 624, 1140, 1259
SfaNI	GCATC	2 cut(s)	421, 1297
SfoI	GGCGCC	1 cut(s)	487
SfuI	TTCGAA	1 cut(s)	1410
SinI	GGWCC	1 cut(s)	761
SmiMI	CAYNNNNRTG	1 cut(s)	1145
SmlI	CTYRAG	5 cut(s)	158, 395, 617, 812, 865
SmoI	CTYRAG	5 cut(s)	158, 395, 617, 812, 865
Sse9I	AATT	5 cut(s)	16, 909, 1236, 1336, 1449
SseBI	AGGCCT	1 cut(s)	615
SsiI	CCGC	9 cut(s)	51, 81, 131, 258, 588, 591, 1117, 1167, 1272
SspDI	GGCGCC	1 cut(s)	485
SspMI	CTAG	5 cut(s)	203, 308, 843, 852, 1100
SstI	GAGCTC	2 cut(s)	188, 396
StuI	AGGCCT	1 cut(s)	615
StyD4I	CCNGG	4 cut(s)	414, 766, 1104, 1120
StyI	CCWWGG	5 cut(s)	105, 279, 543, 798, 1195
TaaI	ACNGT	2 cut(s)	465, 761
TaiI	ACGT	1 cut(s)	476
TaqI	TCGA	5 cut(s)	100, 111, 372, 608, 1410
TasI	AATT	5 cut(s)	16, 909, 1236, 1336, 1449
TatI	WGTACW	1 cut(s)	1157
TauI	GCSGC	6 cut(s)	53, 133, 260, 591, 594, 1120
Tru1I	TTAA	4 cut(s)	27, 420, 552, 1023
Tru9I	TTAA	4 cut(s)	27, 420, 552, 1023
TscAI	CASTG	2 cut(s)	470, 934
TseFI	GTSAC	1 cut(s)	1264
TseI	GCWGC	5 cut(s)	359, 585, 794, 953, 1469
Tsp45I	GTSAC	1 cut(s)	1264
TspDTI	ATGAA	3 cut(s)	1013, 1193, 1398
TspRI	CASTG	2 cut(s)	470, 934
VneI	GTGCAC	1 cut(s)	1136
VpaK11BI	GGWCC	1 cut(s)	761
XagI	CCTNNNNNAGG	1 cut(s)	771
XapI	RAATTY	1 cut(s)	16
XceI	RCATGY	1 cut(s)	1150
XmiI	GTMKAC	1 cut(s)	1018
XmnI	GAANNNNTTC	1 cut(s)	578
XspI	CTAG	5 cut(s)	203, 308, 843, 852, 1100

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.