Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011998.1

Orthogroup ID

OG0000261

Physical Location & Seq

Genomic Coordinates Reverse (-)

15098 .. 18467

Gene Structure 3370 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011998.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

atggaaagtggtgatgaaaatacagagcaagggaagtcaaggcgtgtatggaccagctttgaagaagaatctttgttgaatgttcttgacggaatcattgctggaggacaacgttgcgacactggaagtttcaaatctggtactttacttaaaatcgagaatgctttaaatcttttatgtcccaattccaatctgaaggcaagtccacatattgagtcaaagttgaagaaactgaagaaagattatagcataatctatgacatgatgaacaagagtggatttggatggaatgatatcaaaaagtgcattgaagtttatagtaatgaagtatgggacacatatttgcagcataacaaaaaggcaaagggatggagaaacaagaagtatccattatttgatagactagctaccatatttgggagtgaccgtgcgactggaattggagctgaggtccctgctgatatgatggaggagcagagcaacaatgaagatggcattgaagttgagaatgacacaagccccatgtcaatgagcacaggacaatctcatgttagtcagaaaaagaggaaaagaaatgatgaagataaaattatgattgcattggataaattgtttgaagaatctggaaaaagaatgcaagcagtgactgatgctatagtgaaagtgcacgatgtatcagtgaggaagattgtgaacctggacaatcacattgcaggagccacagatgtgcaatatcttgataccatgagcttggcaaggttcaggcagcgcttcagaggagacttgaaagtgccaatcatatataagctttatttagcaaaggtattggattatgtggctggtcgagagcttaagaaagatgaagtgtggctagtcgagagagaagtttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000012 GO:0003674 GO:0003824 GO:0003909 GO:0003910 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006266 GO:0006271 GO:0006273 GO:0006281 GO:0006302 GO:0006304 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016874 GO:0016886 GO:0022616 GO:0031974 GO:0031981 GO:0033554 GO:0034641 GO:0034645 GO:0035510 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0044728 GO:0046483 GO:0050896 GO:0051103 GO:0051716 GO:0070013 GO:0070988 GO:0071704 GO:0080111 GO:0090304 GO:0140097 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03030 ko03410 ko03420 ko03430 map03030 map03410 map03420 map03430

Pfam Domains

Protein Families

DNA_ligase_A_C DNA_ligase_A_M DNA_ligase_A_N

Protein Analysis

296

Amino Acids

33.74

Weight (kDa)

6.98

Isoelectric Point (pI)

43.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000261)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g18411 FvH4_1g22560 FvH4_1g24290 FvH4_1g24290 FvH4_1g24290 FvH4_1g29434 FvH4_2g04031 FvH4_2g04811 FvH4_2g07610 FvH4_2g09412 FvH4_3g15552 FvH4_3g30720 FvH4_4g05810 FvH4_4g09541 FvH4_4g15171 FvH4_6g09145 FvH4_6g49541 FvH4_7g00320 FvH4_7g11552
malus_domestica	MD00G1072400.v1.1 MD01G1188100.v1.1 MD07G1132000.v1.1 MD08G1190700.v1.1 MD10G1011200.v1.1 MD14G1164100.v1.1 MD15G1289200.v1.1 MD15G1289300.v1.1 MD17G1245100.v1.1
prunus_persica	Prupe.6G228600_v2.0.a1
pyrus_communis	pycom01g07070 pycom02g06890 pycom02g06900 pycom02g13930 pycom04g07470 pycom04g11770 pycom04g21930 pycom05g08520 pycom06g04490 pycom06g09560 pycom07g03750 pycom08g08760 pycom08g13660 pycom09g11520 pycom09g14250 pycom09g14770 pycom10g00720 pycom10g01290 pycom10g10480 pycom10g15700 pycom12420g00130 pycom12g05380 pycom12g08750 pycom13g19010 pycom13g29080 pycom14g06210 pycom14g13680 pycom14g19850 pycom15g22070 pycom15g23440 pycom15g24950 pycom15g25280 pycom16g11100 pycom16g17080 pycom16g26310 pycom17g15650 pycom17g15670 pycom17g20370
rosa_chinensis	RchiOBHm_Chr1g0373591 RchiOBHm_Chr2g0105551 RchiOBHm_Chr2g0106711 RchiOBHm_Chr2g0106721 RchiOBHm_Chr7g0219611
rosa_laevigata	RLG00000013773 RLG00000017436 RLG00000017533
rosa_multiflora	Rmu_co8001842.1_g000001 Rmu_co8158450.1_g000001 Rmu_sc0000516.1_g000067 Rmu_sc0000566.1_g000009 Rmu_sc0000965.1_g000025 Rmu_sc0001718.1_g000001 Rmu_sc0001719.1_g000020 Rmu_sc0001822.1_g000025 Rmu_sc0002219.1_g000003 Rmu_sc0002460.1_g000059 Rmu_sc0002757.1_g000001 Rmu_sc0002860.1_g000001 Rmu_sc0004531.1_g000001 Rmu_sc0005558.1_g000003 Rmu_sc0011218.1_g000001 Rmu_sc0011998.1_g000003 Rmu_sc0015560.1_g000002 Rmu_sc0015560.1_g000003
rosa_roxburghii	Rroxscaffold_1G00004200 Rroxscaffold_1G00026570 Rroxscaffold_1G00040370 Rroxscaffold_1G00044120 Rroxscaffold_1G00049590 Rroxscaffold_1G00059030 Rroxscaffold_2G00108440 Rroxscaffold_2G00108850 Rroxscaffold_2G00130680 Rroxscaffold_2G00132980 Rroxscaffold_2G00136860 Rroxscaffold_3G00218610 Rroxscaffold_4G00309940 Rroxscaffold_6G00405560
rosa_rugosa	Rorug02G0138000 Rorug02G0138100 Rorug02G0138100 Rorug06G0154000
rosa_samantha	Rh1AG121500 Rh1CG116300 Rh2AG189000 Rh2AG509600 Rh2BG200200 Rh2CG194100 Rh2DG195300 Rh5AG114400 Rh5DG488800
rosa_wichuraiana	Rw0G022020 Rw1G023650 Rw1G026380 Rw1G034750 Rw1G040770 Rw2G014870 Rw2G016560 Rw4G031190 Rw5G026570 Rw6G003020 Rw6G012060 Rw7G014300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	112
AcuI	CTGAAG	3 cut(s)	215, 254, 757
AfaI	GTAC	1 cut(s)	142
AfeI	AGCGCT	1 cut(s)	770
AfiI	CCNNNNNNNGG	1 cut(s)	417
AflII	CTTAAG	1 cut(s)	851
AgsI	TTSAA	8 cut(s)	62, 79, 133, 226, 311, 500, 617, 787
AjnI	CCWGG	1 cut(s)	696
AleI	CACNNNNGTG	1 cut(s)	725
AluBI	AGCT	6 cut(s)	57, 407, 446, 750, 808, 850
AluI	AGCT	6 cut(s)	57, 407, 446, 750, 808, 850
Alw21I	GWGCWC	2 cut(s)	536, 669
Alw26I	GTCTC	1 cut(s)	774
Alw44I	GTGCAC	1 cut(s)	665
AlwNI	CAGNNNCTG	1 cut(s)	647
Aor51HI	AGCGCT	1 cut(s)	770
ApaLI	GTGCAC	1 cut(s)	665
ApeKI	GCWGC	2 cut(s)	346, 766
AspLEI	GCGC	1 cut(s)	771
AspS9I	GGNCC	2 cut(s)	51, 451
AsuHPI	GGTGA	1 cut(s)	23
AvaII	GGWCC	2 cut(s)	51, 451
BaeGI	GKGCMC	1 cut(s)	669
Bbv12I	GWGCWC	2 cut(s)	536, 669
BbvCI	CCTCAGC	1 cut(s)	447
BbvI	GCAGC	2 cut(s)	358, 778
BccI	CCATC	4 cut(s)	279, 363, 460, 485
BciT130I	CCWGG	1 cut(s)	698
BciVI	GTATCC	1 cut(s)	396
BcoDI	GTCTC	1 cut(s)	774
BfaI	CTAG	2 cut(s)	404, 872
BfmI	CTRYAG	1 cut(s)	654
BfoI	RGCGCY	1 cut(s)	772
BfrI	CTTAAG	1 cut(s)	851
BfuI	GTATCC	1 cut(s)	396
BisI	GCNGC	2 cut(s)	347, 767
BlsI	GCNGC	2 cut(s)	348, 768
Bme1390I	CCNGG	1 cut(s)	698
Bme18I	GGWCC	2 cut(s)	51, 451
BmgT120I	GGNCC	2 cut(s)	51, 451
BmiI	GGNNCC	2 cut(s)	453, 718
BmrFI	CCNGG	1 cut(s)	698
BmsI	GCATC	1 cut(s)	640
BpmI	CTGGAG	1 cut(s)	123
Bpu10I	CCTNAGC	1 cut(s)	447
BsaXI	ACNNNNNCTCC	4 cut(s)	412, 435, 442, 465
Bsc4I	CCNNNNNNNGG	1 cut(s)	417
Bse1I	ACTGG	2 cut(s)	127, 439
Bse3DI	GCAATG	2 cut(s)	96, 708
BseBI	CCWGG	1 cut(s)	698
BseGI	GGATG	2 cut(s)	290, 374
BseLI	CCNNNNNNNGG	1 cut(s)	417
BseMI	GCAATG	2 cut(s)	96, 708
BseMII	CTCAG	1 cut(s)	438
BseNI	ACTGG	2 cut(s)	127, 439
BseRI	GAGGAG	2 cut(s)	485, 792
BseSI	GKGCMC	1 cut(s)	669
BseXI	GCAGC	2 cut(s)	358, 778
BsiHKAI	GWGCWC	2 cut(s)	536, 669
BslFI	GGGAC	3 cut(s)	165, 347, 437
BslI	CCNNNNNNNGG	1 cut(s)	417
BsmAI	GTCTC	1 cut(s)	774
BsmFI	GGGAC	3 cut(s)	165, 347, 437
BsmI	GAATGC	2 cut(s)	166, 639
Bsp1286I	GDGCHC	2 cut(s)	536, 669
BspCNI	CTCAG	1 cut(s)	439
BspLI	GGNNCC	2 cut(s)	453, 718
BspTI	CTTAAG	1 cut(s)	851
BsrDI	GCAATG	2 cut(s)	96, 708
BsrI	ACTGG	2 cut(s)	127, 439
Bst2UI	CCWGG	1 cut(s)	698
Bst4CI	ACNGT	1 cut(s)	428
BstAFI	CTTAAG	1 cut(s)	851
BstC8I	GCNNGC	1 cut(s)	639
BstDEI	CTNAG	1 cut(s)	447
BstF5I	GGATG	2 cut(s)	290, 374
BstH2I	RGCGCY	1 cut(s)	772
BstHHI	GCGC	1 cut(s)	771
BstMAI	GTCTC	1 cut(s)	774
BstNI	CCWGG	1 cut(s)	698
BstSCI	CCNGG	1 cut(s)	696
BstSFI	CTRYAG	1 cut(s)	654
BstSLI	GKGCMC	1 cut(s)	669
BstV1I	GCAGC	2 cut(s)	358, 778
BstXI	CCANNNNNNTGG	1 cut(s)	751
BsuI	GTATCC	1 cut(s)	396
BtsCI	GGATG	2 cut(s)	290, 374
BtsI	GCAGTG	1 cut(s)	648
BtsIMutI	CAGTG	3 cut(s)	120, 648, 684
Cac8I	GCNNGC	1 cut(s)	639
CaiI	CAGNNNCTG	1 cut(s)	647
CfoI	GCGC	1 cut(s)	771
Cfr13I	GGNCC	2 cut(s)	51, 451
Csp6I	GTAC	1 cut(s)	141
CviAII	CATG	4 cut(s)	262, 523, 548, 745
CviQI	GTAC	1 cut(s)	141
DdeI	CTNAG	1 cut(s)	447
DraI	TTTAAA	1 cut(s)	168
Eco32I	GATATC	1 cut(s)	295
Eco47I	GGWCC	2 cut(s)	51, 451
Eco47III	AGCGCT	1 cut(s)	770
Eco57I	CTGAAG	3 cut(s)	215, 254, 757
EcoO109I	RGGNCCY	1 cut(s)	451
EcoRII	CCWGG	1 cut(s)	696
EcoRV	GATATC	1 cut(s)	295
FaeI	CATG	4 cut(s)	265, 526, 551, 748
FaqI	GGGAC	3 cut(s)	165, 347, 437
FatI	CATG	4 cut(s)	261, 522, 547, 744
Fnu4HI	GCNGC	2 cut(s)	347, 767
FokI	GGATG	2 cut(s)	297, 381
Fsp4HI	GCNGC	2 cut(s)	347, 767
FspBI	CTAG	2 cut(s)	404, 872
GlaI	GCGC	1 cut(s)	770
GluI	GCNGC	2 cut(s)	347, 767
GsuI	CTGGAG	1 cut(s)	123
HaeII	RGCGCY	1 cut(s)	772
HhaI	GCGC	1 cut(s)	771
Hin1II	CATG	4 cut(s)	265, 526, 551, 748
Hin6I	GCGC	1 cut(s)	769
HinP1I	GCGC	1 cut(s)	769
HindIII	AAGCTT	1 cut(s)	806
HinfI	GANTC	4 cut(s)	68, 93, 215, 620
HphI	GGTGA	1 cut(s)	23
Hpy166II	GTNNAC	3 cut(s)	206, 667, 694
Hpy188I	TCNGA	3 cut(s)	195, 558, 776
Hpy188III	TCNNGA	6 cut(s)	86, 157, 624, 737, 845, 877
Hpy8I	GTNNAC	3 cut(s)	206, 667, 694
HpyAV	CCTTC	1 cut(s)	190
HpyCH4III	ACNGT	1 cut(s)	428
HpyCH4IV	ACGT	1 cut(s)	112
HpyCH4V	TGCA	7 cut(s)	306, 346, 599, 637, 667, 713, 730
HpyF3I	CTNAG	1 cut(s)	447
HpySE526I	ACGT	1 cut(s)	112
Hsp92II	CATG	4 cut(s)	265, 526, 551, 748
HspAI	GCGC	1 cut(s)	769
LmnI	GCTCC	3 cut(s)	443, 472, 716
Lsp1109I	GCAGC	2 cut(s)	358, 778
LweI	GCATC	1 cut(s)	640
MaeI	CTAG	2 cut(s)	404, 872
MaeII	ACGT	1 cut(s)	112
MaeIII	GTNAC	2 cut(s)	422, 643
MboII	GAAGA	8 cut(s)	74, 77, 238, 247, 500, 593, 629, 697
MhlI	GDGCHC	2 cut(s)	536, 669
MluCI	AATT	4 cut(s)	184, 438, 588, 608
MlyI	GAGTC	1 cut(s)	224
MnlI	CCTC	6 cut(s)	98, 442, 463, 558, 675, 770
MseI	TTAA	3 cut(s)	150, 167, 852
MslI	CAYNNNNRTG	2 cut(s)	527, 725
MspCI	CTTAAG	1 cut(s)	851
MspR9I	CCNGG	1 cut(s)	698
Mva1269I	GAATGC	2 cut(s)	166, 639
MvaI	CCWGG	1 cut(s)	698
NlaIII	CATG	4 cut(s)	265, 526, 551, 748
NlaIV	GGNNCC	2 cut(s)	453, 718
NmuCI	GTSAC	2 cut(s)	422, 643
OliI	CACNNNNGTG	1 cut(s)	725
PctI	GAATGC	2 cut(s)	166, 639
PfeI	GAWTC	3 cut(s)	68, 93, 620
PkrI	GCNGC	2 cut(s)	348, 768
PleI	GAGTC	1 cut(s)	223
PpsI	GAGTC	1 cut(s)	223
PpuMI	RGGWCCY	1 cut(s)	451
Psp1406I	AACGTT	1 cut(s)	112
Psp5II	RGGWCCY	1 cut(s)	451
Psp6I	CCWGG	1 cut(s)	696
PspGI	CCWGG	1 cut(s)	696
PspN4I	GGNNCC	2 cut(s)	453, 718
PspPI	GGNCC	2 cut(s)	51, 451
PspPPI	RGGWCCY	1 cut(s)	451
PstNI	CAGNNNCTG	1 cut(s)	647
RsaI	GTAC	1 cut(s)	142
RsaNI	GTAC	1 cut(s)	141
RseI	CAYNNNNRTG	2 cut(s)	527, 725
SaqAI	TTAA	3 cut(s)	150, 167, 852
SatI	GCNGC	2 cut(s)	347, 767
Sau96I	GGNCC	2 cut(s)	51, 451
SchI	GAGTC	1 cut(s)	224
ScrFI	CCNGG	1 cut(s)	698
SduI	GDGCHC	2 cut(s)	536, 669
SfaNI	GCATC	1 cut(s)	640
SfcI	CTRYAG	1 cut(s)	654
SinI	GGWCC	2 cut(s)	51, 451
SmiMI	CAYNNNNRTG	2 cut(s)	527, 725
SmlI	CTYRAG	1 cut(s)	851
SmoI	CTYRAG	1 cut(s)	851
Sse9I	AATT	4 cut(s)	184, 438, 588, 608
SspMI	CTAG	2 cut(s)	404, 872
StyD4I	CCNGG	1 cut(s)	696
TaaI	ACNGT	1 cut(s)	428
TaiI	ACGT	1 cut(s)	115
TaqI	TCGA	3 cut(s)	156, 844, 876
TasI	AATT	4 cut(s)	184, 438, 588, 608
TfiI	GAWTC	3 cut(s)	68, 93, 620
Tru1I	TTAA	3 cut(s)	150, 167, 852
Tru9I	TTAA	3 cut(s)	150, 167, 852
TscAI	CASTG	3 cut(s)	127, 648, 684
TseFI	GTSAC	2 cut(s)	422, 643
TseI	GCWGC	2 cut(s)	346, 766
Tsp45I	GTSAC	2 cut(s)	422, 643
TspDTI	ATGAA	6 cut(s)	30, 281, 339, 501, 594, 876
TspGWI	ACGGA	1 cut(s)	105
TspRI	CASTG	3 cut(s)	127, 648, 684
Vha464I	CTTAAG	1 cut(s)	851
VneI	GTGCAC	1 cut(s)	665
VpaK11BI	GGWCC	2 cut(s)	51, 451
XspI	CTAG	2 cut(s)	404, 872

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.