Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0000261

Physical Location & Seq

Genomic Coordinates Reverse (-)

26723683 .. 26724775

Gene Structure 1093 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1289300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 216 bp

ATGGGGAACTCGTCGACGGATGACTACGCCACCACTGGCGACGGCTCTTGCGGCGACACTCCGCCACTAAATTCCAGCATCTACTCCGAGGGCGAGAAGGTCCTTGCCTACCACGGCAAGCGCATCTACGACGCCAAGGTTCAAAAGCTTGAGCTCAGAAATAACAAATGGATTTACTTCGTTCACTACCTTGGTTGGAATAAAGTGTACGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000123 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006325 GO:0006338 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0031248 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0051276 GO:0070013 GO:0071704 GO:0071840 GO:1901564 GO:1902493 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MRG Tudor-knot

Protein Analysis

72

Amino Acids

8.07

Weight (kDa)

6.7

Isoelectric Point (pI)

45.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MSL3_chromo-like	PF22732	28 - 70	7.2e-07	MSL3 chromodomain-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000261)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g18411 FvH4_1g22560 FvH4_1g24290 FvH4_1g24290 FvH4_1g24290 FvH4_1g29434 FvH4_2g04031 FvH4_2g04811 FvH4_2g07610 FvH4_2g09412 FvH4_3g15552 FvH4_3g30720 FvH4_4g05810 FvH4_4g09541 FvH4_4g15171 FvH4_6g09145 FvH4_6g49541 FvH4_7g00320 FvH4_7g11552
malus_domestica	MD00G1072400.v1.1 MD01G1188100.v1.1 MD07G1132000.v1.1 MD08G1190700.v1.1 MD10G1011200.v1.1 MD14G1164100.v1.1 MD15G1289200.v1.1 MD15G1289300.v1.1 MD17G1245100.v1.1
prunus_persica	Prupe.6G228600_v2.0.a1
pyrus_communis	pycom01g07070 pycom02g06890 pycom02g06900 pycom02g13930 pycom04g07470 pycom04g11770 pycom04g21930 pycom05g08520 pycom06g04490 pycom06g09560 pycom07g03750 pycom08g08760 pycom08g13660 pycom09g11520 pycom09g14250 pycom09g14770 pycom10g00720 pycom10g01290 pycom10g10480 pycom10g15700 pycom12420g00130 pycom12g05380 pycom12g08750 pycom13g19010 pycom13g29080 pycom14g06210 pycom14g13680 pycom14g19850 pycom15g22070 pycom15g23440 pycom15g24950 pycom15g25280 pycom16g11100 pycom16g17080 pycom16g26310 pycom17g15650 pycom17g15670 pycom17g20370
rosa_chinensis	RchiOBHm_Chr1g0373591 RchiOBHm_Chr2g0105551 RchiOBHm_Chr2g0106711 RchiOBHm_Chr2g0106721 RchiOBHm_Chr7g0219611
rosa_laevigata	RLG00000013773 RLG00000017436 RLG00000017533
rosa_multiflora	Rmu_co8001842.1_g000001 Rmu_co8158450.1_g000001 Rmu_sc0000516.1_g000067 Rmu_sc0000566.1_g000009 Rmu_sc0000965.1_g000025 Rmu_sc0001718.1_g000001 Rmu_sc0001719.1_g000020 Rmu_sc0001822.1_g000025 Rmu_sc0002219.1_g000003 Rmu_sc0002460.1_g000059 Rmu_sc0002757.1_g000001 Rmu_sc0002860.1_g000001 Rmu_sc0004531.1_g000001 Rmu_sc0005558.1_g000003 Rmu_sc0011218.1_g000001 Rmu_sc0011998.1_g000003 Rmu_sc0015560.1_g000002 Rmu_sc0015560.1_g000003
rosa_roxburghii	Rroxscaffold_1G00004200 Rroxscaffold_1G00026570 Rroxscaffold_1G00040370 Rroxscaffold_1G00044120 Rroxscaffold_1G00049590 Rroxscaffold_1G00059030 Rroxscaffold_2G00108440 Rroxscaffold_2G00108850 Rroxscaffold_2G00130680 Rroxscaffold_2G00132980 Rroxscaffold_2G00136860 Rroxscaffold_3G00218610 Rroxscaffold_4G00309940 Rroxscaffold_6G00405560
rosa_rugosa	Rorug02G0138000 Rorug02G0138100 Rorug02G0138100 Rorug06G0154000
rosa_samantha	Rh1AG121500 Rh1CG116300 Rh2AG189000 Rh2AG509600 Rh2BG200200 Rh2CG194100 Rh2DG195300 Rh5AG114400 Rh5DG488800
rosa_wichuraiana	Rw0G022020 Rw1G023650 Rw1G026380 Rw1G034750 Rw1G040770 Rw2G014870 Rw2G016560 Rw4G031190 Rw5G026570 Rw6G003020 Rw6G012060 Rw7G014300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	14
AciI	CCGC	2 cut(s)	51, 62
AcsI	RAATTY	1 cut(s)	70
AcyI	GRCGYC	1 cut(s)	132
AfaI	GTAC	1 cut(s)	209
AflIII	ACRYGT	1 cut(s)	210
AgsI	TTSAA	1 cut(s)	143
AluBI	AGCT	2 cut(s)	148, 154
AluI	AGCT	2 cut(s)	148, 154
Alw21I	GWGCWC	1 cut(s)	156
ApoI	RAATTY	1 cut(s)	70
AspLEI	GCGC	1 cut(s)	123
AspS9I	GGNCC	1 cut(s)	100
AvaII	GGWCC	1 cut(s)	100
BanII	GRGCYC	1 cut(s)	156
Bbv12I	GWGCWC	1 cut(s)	156
BceAI	ACGGC	2 cut(s)	58, 130
BisI	GCNGC	1 cut(s)	52
BlsI	GCNGC	1 cut(s)	53
Bme18I	GGWCC	1 cut(s)	100
BmgT120I	GGNCC	1 cut(s)	100
BmsI	GCATC	2 cut(s)	87, 132
BpuEI	CTTGAG	1 cut(s)	170
BsaAI	YACGTR	1 cut(s)	211
BsaHI	GRCGYC	1 cut(s)	132
BsaJI	CCNNGG	4 cut(s)	87, 112, 135, 190
Bse1I	ACTGG	1 cut(s)	40
BseDI	CCNNGG	4 cut(s)	87, 112, 135, 190
BseGI	GGATG	1 cut(s)	25
BseMII	CTCAG	1 cut(s)	169
BseNI	ACTGG	1 cut(s)	40
BsiHKAI	GWGCWC	1 cut(s)	156
Bsp1286I	GDGCHC	1 cut(s)	156
BspACI	CCGC	2 cut(s)	51, 62
BspCNI	CTCAG	1 cut(s)	168
BsrI	ACTGG	1 cut(s)	40
BssECI	CCNNGG	4 cut(s)	87, 112, 135, 190
BssNI	GRCGYC	1 cut(s)	132
BssT1I	CCWWGG	2 cut(s)	135, 190
BstACI	GRCGYC	1 cut(s)	132
BstBAI	YACGTR	1 cut(s)	211
BstC8I	GCNNGC	1 cut(s)	119
BstDEI	CTNAG	1 cut(s)	155
BstDSI	CCRYGG	1 cut(s)	112
BstF5I	GGATG	1 cut(s)	25
BstHHI	GCGC	1 cut(s)	123
BstMWI	GCNNNNNNNGC	1 cut(s)	51
BtgI	CCRYGG	1 cut(s)	112
BtsCI	GGATG	1 cut(s)	25
BtsIMutI	CAGTG	1 cut(s)	33
Cac8I	GCNNGC	1 cut(s)	119
CfoI	GCGC	1 cut(s)	123
Cfr13I	GGNCC	1 cut(s)	100
CseI	GACGC	1 cut(s)	140
Csp6I	GTAC	1 cut(s)	208
CviJI	RGCY	3 cut(s)	45, 148, 154
CviKI_1	RGCY	3 cut(s)	45, 148, 154
CviQI	GTAC	1 cut(s)	208
DdeI	CTNAG	1 cut(s)	155
EciI	GGCGGA	1 cut(s)	51
Ecl136II	GAGCTC	1 cut(s)	154
Eco130I	CCWWGG	2 cut(s)	135, 190
Eco24I	GRGCYC	1 cut(s)	156
Eco47I	GGWCC	1 cut(s)	100
Eco53kI	GAGCTC	1 cut(s)	154
EcoICRI	GAGCTC	1 cut(s)	154
EcoO109I	RGGNCCY	1 cut(s)	100
EcoT14I	CCWWGG	2 cut(s)	135, 190
EcoT38I	GRGCYC	1 cut(s)	156
ErhI	CCWWGG	2 cut(s)	135, 190
FblI	GTMKAC	1 cut(s)	14
Fnu4HI	GCNGC	1 cut(s)	52
FokI	GGATG	1 cut(s)	32
FriOI	GRGCYC	1 cut(s)	156
Fsp4HI	GCNGC	1 cut(s)	52
GlaI	GCGC	1 cut(s)	122
GluI	GCNGC	1 cut(s)	52
HgaI	GACGC	1 cut(s)	140
HhaI	GCGC	1 cut(s)	123
Hin1I	GRCGYC	1 cut(s)	132
Hin6I	GCGC	1 cut(s)	121
HinP1I	GCGC	1 cut(s)	121
HincII	GTYRAC	1 cut(s)	15
HindII	GTYRAC	1 cut(s)	15
HindIII	AAGCTT	1 cut(s)	146
Hpy166II	GTNNAC	3 cut(s)	15, 184, 208
Hpy188I	TCNGA	2 cut(s)	88, 158
Hpy8I	GTNNAC	3 cut(s)	15, 184, 208
Hpy99I	CGWCG	4 cut(s)	16, 19, 44, 134
HpyAV	CCTTC	1 cut(s)	91
HpyCH4IV	ACGT	1 cut(s)	210
HpyF10VI	GCNNNNNNNGC	1 cut(s)	51
HpyF3I	CTNAG	1 cut(s)	155
HpySE526I	ACGT	1 cut(s)	210
Hsp92I	GRCGYC	1 cut(s)	132
HspAI	GCGC	1 cut(s)	121
LpnPI	CCDG	2 cut(s)	21, 88
LweI	GCATC	2 cut(s)	87, 132
MaeII	ACGT	1 cut(s)	210
MhlI	GDGCHC	1 cut(s)	156
MluCI	AATT	1 cut(s)	70
MmeI	TCCRAC	1 cut(s)	176
MnlI	CCTC	1 cut(s)	82
MwoI	GCNNNNNNNGC	1 cut(s)	51
PkrI	GCNGC	1 cut(s)	53
Ppu21I	YACGTR	1 cut(s)	211
PpuMI	RGGWCCY	1 cut(s)	100
Psp124BI	GAGCTC	1 cut(s)	156
Psp5II	RGGWCCY	1 cut(s)	100
PspPI	GGNCC	1 cut(s)	100
PspPPI	RGGWCCY	1 cut(s)	100
RsaI	GTAC	1 cut(s)	209
RsaNI	GTAC	1 cut(s)	208
SacI	GAGCTC	1 cut(s)	156
SalI	GTCGAC	1 cut(s)	13
SatI	GCNGC	1 cut(s)	52
Sau96I	GGNCC	1 cut(s)	100
SduI	GDGCHC	1 cut(s)	156
SetI	ASST	6 cut(s)	102, 141, 150, 156, 192, 213
SfaNI	GCATC	2 cut(s)	87, 132
SgrDI	CGTCGACG	1 cut(s)	13
SinI	GGWCC	1 cut(s)	100
SmlI	CTYRAG	1 cut(s)	149
SmoI	CTYRAG	1 cut(s)	149
Sse9I	AATT	1 cut(s)	70
SsiI	CCGC	2 cut(s)	51, 62
SstI	GAGCTC	1 cut(s)	156
StyI	CCWWGG	2 cut(s)	135, 190
TaiI	ACGT	1 cut(s)	213
TaqI	TCGA	1 cut(s)	14
TasI	AATT	1 cut(s)	70
TauI	GCSGC	1 cut(s)	54
TscAI	CASTG	1 cut(s)	40
TspGWI	ACGGA	1 cut(s)	32
TspRI	CASTG	1 cut(s)	40
VpaK11BI	GGWCC	1 cut(s)	100
XapI	RAATTY	1 cut(s)	70
XmiI	GTMKAC	1 cut(s)	14

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.