pycom12g08750
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0000261
Physical Location & Seq
Forward (+)
10282536 .. 10293722
11187 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g08750.2

Sequence Viewer

Length: 831 bp
ATGCATATTGTGATTTGGTTATGGGTTTGGAAACAACATGAAGAATATGCATTGTTCTCCATACTTGAGGAGGCAGTTGTTAAGAATTTGCAATGTGATAACAGTTGTTTCAAACCTGGAACAATGGCTCAGTTTGAAACAGCTATTAATTTGAAATGTCCTAATGCCAATATAAAGGCAGTTCCACATATTGAGTCCAAAATGAGGAGGTGGAAAAAAGATTATGAAATAGTTTATGACATGGTTAATAAAACTGGTTTTGCATGGAATGATGTACGAAAGTGTATTGAGGTTGATAGCACTGAAGTATGGCAATCCTATGTAAAGGTTAACAAAGAAGCAGAAGGCTGGCTGGGAAAATCCTCTCCATTGTATGACATATTGAATGTTATTTTTGGGAAAGACCGAGCAACCGGAGTAAGAGCTGCAACTCCTACTGAGATGATGAATGAGCCTGAGCACATTAATGAAGATGAAGATGAGGCGGAGACTAGTTCTCCCTCTGTTGCTCGACGGTCCAGTAATTCAAGTACCCGAAAAAGGAAGAAAGCTACTAATGATAATGATCTTGCTGTGGCATTTAAAGAAATGCTTTCTGAATCAGTTGATAAGTTGGGTGAAGTTTTACAAGTTGCTTTTGGGAAAGGAGTGGATCCAAAACCTGAGATTGTTTCAGAATTGTCAAAGATGGATTTGTCTATTGAGGATCAAATCAAGGTACTAAATATCCTTTTTGAAAAGCCACAGAATGAGAGGACATTCTCGTCTTTGGATGGTGCAATGAAAAAAGCGTTTGTACGCATGTTACTTGGACAAAGTAACCCCAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

277

Amino Acids

31.41

Weight (kDa)

5.59

Isoelectric Point (pI)

63.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000261)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18411 FvH4_1g22560 FvH4_1g24290 FvH4_1g24290 FvH4_1g24290 FvH4_1g29434 FvH4_2g04031 FvH4_2g04811 FvH4_2g07610 FvH4_2g09412 FvH4_3g15552 FvH4_3g30720 FvH4_4g05810 FvH4_4g09541 FvH4_4g15171 FvH4_6g09145 FvH4_6g49541 FvH4_7g00320 FvH4_7g11552
malus_domestica MD00G1072400.v1.1 MD01G1188100.v1.1 MD07G1132000.v1.1 MD08G1190700.v1.1 MD10G1011200.v1.1 MD14G1164100.v1.1 MD15G1289200.v1.1 MD15G1289300.v1.1 MD17G1245100.v1.1
prunus_persica Prupe.6G228600_v2.0.a1
pyrus_communis pycom01g07070 pycom02g06890 pycom02g06900 pycom02g13930 pycom04g07470 pycom04g11770 pycom04g21930 pycom05g08520 pycom06g04490 pycom06g09560 pycom07g03750 pycom08g08760 pycom08g13660 pycom09g11520 pycom09g14250 pycom09g14770 pycom10g00720 pycom10g01290 pycom10g10480 pycom10g15700 pycom12420g00130 pycom12g05380 pycom12g08750 pycom13g19010 pycom13g29080 pycom14g06210 pycom14g13680 pycom14g19850 pycom15g22070 pycom15g23440 pycom15g24950 pycom15g25280 pycom16g11100 pycom16g17080 pycom16g26310 pycom17g15650 pycom17g15670 pycom17g20370
rosa_chinensis RchiOBHm_Chr1g0373591 RchiOBHm_Chr2g0105551 RchiOBHm_Chr2g0106711 RchiOBHm_Chr2g0106721 RchiOBHm_Chr7g0219611
rosa_laevigata RLG00000013773 RLG00000017436 RLG00000017533
rosa_multiflora Rmu_co8001842.1_g000001 Rmu_co8158450.1_g000001 Rmu_sc0000516.1_g000067 Rmu_sc0000566.1_g000009 Rmu_sc0000965.1_g000025 Rmu_sc0001718.1_g000001 Rmu_sc0001719.1_g000020 Rmu_sc0001822.1_g000025 Rmu_sc0002219.1_g000003 Rmu_sc0002460.1_g000059 Rmu_sc0002757.1_g000001 Rmu_sc0002860.1_g000001 Rmu_sc0004531.1_g000001 Rmu_sc0005558.1_g000003 Rmu_sc0011218.1_g000001 Rmu_sc0011998.1_g000003 Rmu_sc0015560.1_g000002 Rmu_sc0015560.1_g000003
rosa_roxburghii Rroxscaffold_1G00004200 Rroxscaffold_1G00026570 Rroxscaffold_1G00040370 Rroxscaffold_1G00044120 Rroxscaffold_1G00049590 Rroxscaffold_1G00059030 Rroxscaffold_2G00108440 Rroxscaffold_2G00108850 Rroxscaffold_2G00130680 Rroxscaffold_2G00132980 Rroxscaffold_2G00136860 Rroxscaffold_3G00218610 Rroxscaffold_4G00309940 Rroxscaffold_6G00405560
rosa_rugosa Rorug02G0138000 Rorug02G0138100 Rorug02G0138100 Rorug06G0154000
rosa_samantha Rh1AG121500 Rh1CG116300 Rh2AG189000 Rh2AG509600 Rh2BG200200 Rh2CG194100 Rh2DG195300 Rh5AG114400 Rh5DG488800
rosa_wichuraiana Rw0G022020 Rw1G023650 Rw1G026380 Rw1G034750 Rw1G040770 Rw2G014870 Rw2G016560 Rw4G031190 Rw5G026570 Rw6G003020 Rw6G012060 Rw7G014300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 763
AciI CCGC 1 cut(s) 485
AclWI GGATC 3 cut(s) 647, 660, 714
AcsI RAATTY 1 cut(s) 85
AcuI CTGAAG 1 cut(s) 324
AfaI GTAC 4 cut(s) 276, 532, 720, 798
AfiI CCNNNNNNNGG 2 cut(s) 204, 540
AgsI TTSAA 6 cut(s) 112, 137, 154, 385, 528, 737
AhlI ACTAGT 1 cut(s) 491
AjnI CCWGG 1 cut(s) 115
AluBI AGCT 3 cut(s) 143, 425, 551
AluI AGCT 3 cut(s) 143, 425, 551
Alw21I GWGCWC 1 cut(s) 462
Alw26I GTCTC 1 cut(s) 482
AlwI GGATC 3 cut(s) 647, 660, 714
ApeKI GCWGC 1 cut(s) 425
ApoI RAATTY 1 cut(s) 85
AseI ATTAAT 2 cut(s) 147, 465
AspS9I GGNCC 1 cut(s) 516
AsuHPI GGTGA 1 cut(s) 629
AvaII GGWCC 1 cut(s) 516
BamHI GGATCC 1 cut(s) 652
Bbv12I GWGCWC 1 cut(s) 462
BbvI GCAGC 1 cut(s) 412
BccI CCATC 2 cut(s) 682, 767
BciT130I CCWGG 1 cut(s) 117
BcoDI GTCTC 1 cut(s) 482
BcuI ACTAGT 1 cut(s) 491
BfaI CTAG 1 cut(s) 492
BisI GCNGC 1 cut(s) 426
BlsI GCNGC 1 cut(s) 427
Bme1390I CCNGG 1 cut(s) 117
Bme18I GGWCC 1 cut(s) 516
BmgT120I GGNCC 1 cut(s) 516
BmiI GGNNCC 1 cut(s) 654
BmrFI CCNGG 1 cut(s) 117
Bpu10I CCTNAGC 1 cut(s) 456
BpuEI CTTGAG 1 cut(s) 86
BsaBI GATNNNNATC 1 cut(s) 564
BsaWI WCCGGW 1 cut(s) 413
BsaXI ACNNNNNCTCC 2 cut(s) 481, 511
Bsc4I CCNNNNNNNGG 2 cut(s) 204, 540
Bse1I ACTGG 2 cut(s) 259, 519
Bse3DI GCAATG 2 cut(s) 98, 786
Bse8I GATNNNNATC 1 cut(s) 564
BseBI CCWGG 1 cut(s) 117
BseGI GGATG 1 cut(s) 778
BseJI GATNNNNATC 1 cut(s) 564
BseLI CCNNNNNNNGG 2 cut(s) 204, 540
BseMI GCAATG 2 cut(s) 98, 786
BseMII CTCAG 4 cut(s) 143, 429, 447, 654
BseNI ACTGG 2 cut(s) 259, 519
BseRI GAGGAG 2 cut(s) 83, 220
BseXI GCAGC 1 cut(s) 412
BseYI CCCAGC 1 cut(s) 352
BsiHKAI GWGCWC 1 cut(s) 462
BsiSI CCGG 1 cut(s) 414
BslI CCNNNNNNNGG 2 cut(s) 204, 540
BsmAI GTCTC 1 cut(s) 482
Bsp1286I GDGCHC 1 cut(s) 462
Bsp143I GATC 3 cut(s) 565, 652, 706
BspACI CCGC 1 cut(s) 485
BspCNI CTCAG 4 cut(s) 142, 430, 448, 655
BspLI GGNNCC 1 cut(s) 654
BspPI GGATC 3 cut(s) 647, 660, 714
BsrDI GCAATG 2 cut(s) 98, 786
BsrI ACTGG 2 cut(s) 259, 519
BssMI GATC 3 cut(s) 565, 652, 706
Bst2UI CCWGG 1 cut(s) 117
Bst4CI ACNGT 2 cut(s) 104, 516
BstC8I GCNNGC 1 cut(s) 350
BstDEI CTNAG 4 cut(s) 129, 438, 456, 663
BstF5I GGATG 1 cut(s) 778
BstKTI GATC 3 cut(s) 568, 655, 709
BstMAI GTCTC 1 cut(s) 482
BstMBI GATC 3 cut(s) 565, 652, 706
BstNI CCWGG 1 cut(s) 117
BstNSI RCATGY 1 cut(s) 805
BstSCI CCNGG 1 cut(s) 115
BstV1I GCAGC 1 cut(s) 412
BstX2I RGATCY 1 cut(s) 652
BstYI RGATCY 1 cut(s) 652
BtsCI GGATG 1 cut(s) 778
BtsIMutI CAGTG 1 cut(s) 300
Cac8I GCNNGC 1 cut(s) 350
Cfr13I GGNCC 1 cut(s) 516
Csp6I GTAC 4 cut(s) 275, 531, 719, 797
CviAII CATG 4 cut(s) 38, 241, 264, 802
CviJI RGCY 8 cut(s) 128, 143, 348, 352, 425, 454, 551, 742
CviKI_1 RGCY 8 cut(s) 128, 143, 348, 352, 425, 454, 551, 742
CviQI GTAC 4 cut(s) 275, 531, 719, 797
DdeI CTNAG 4 cut(s) 129, 438, 456, 663
DpnI GATC 3 cut(s) 567, 654, 708
DpnII GATC 3 cut(s) 565, 652, 706
DraI TTTAAA 1 cut(s) 583
DrdI GACNNNNNNGTC 1 cut(s) 763
DseDI GACNNNNNNGTC 1 cut(s) 763
EciI GGCGGA 1 cut(s) 500
Eco47I GGWCC 1 cut(s) 516
Eco57I CTGAAG 1 cut(s) 324
EcoRII CCWGG 1 cut(s) 115
EcoT22I ATGCAT 2 cut(s) 6, 52
FaeI CATG 4 cut(s) 41, 244, 267, 805
FalI AAGNNNNNCTT 2 cut(s) 576, 608
FatI CATG 4 cut(s) 37, 240, 263, 801
Fnu4HI GCNGC 1 cut(s) 426
FokI GGATG 1 cut(s) 785
Fsp4HI GCNGC 1 cut(s) 426
FspBI CTAG 1 cut(s) 492
GluI GCNGC 1 cut(s) 426
GsaI CCCAGC 1 cut(s) 356
HapII CCGG 1 cut(s) 414
Hin1II CATG 4 cut(s) 41, 244, 267, 805
HincII GTYRAC 1 cut(s) 331
HindII GTYRAC 1 cut(s) 331
HinfI GANTC 2 cut(s) 194, 599
HpaI GTTAAC 1 cut(s) 331
HpaII CCGG 1 cut(s) 414
HphI GGTGA 1 cut(s) 629
Hpy166II GTNNAC 1 cut(s) 331
Hpy188I TCNGA 2 cut(s) 598, 676
Hpy8I GTNNAC 1 cut(s) 331
Hpy99I CGWCG 1 cut(s) 516
HpyAV CCTTC 1 cut(s) 338
HpyCH4III ACNGT 2 cut(s) 104, 516
HpyCH4V TGCA 6 cut(s) 4, 50, 91, 263, 428, 779
HpyF3I CTNAG 4 cut(s) 129, 438, 456, 663
Hsp92II CATG 4 cut(s) 41, 244, 267, 805
KspAI GTTAAC 1 cut(s) 331
Kzo9I GATC 3 cut(s) 565, 652, 706
LpnPI CCDG 9 cut(s) 102, 129, 240, 334, 338, 427, 468, 532, 675
Lsp1109I GCAGC 1 cut(s) 412
MaeI CTAG 1 cut(s) 492
MaeIII GTNAC 2 cut(s) 804, 818
MalI GATC 3 cut(s) 567, 654, 708
MboI GATC 3 cut(s) 565, 652, 706
MboII GAAGA 4 cut(s) 53, 482, 488, 556
MfeI CAATTG 1 cut(s) 826
MflI RGATCY 1 cut(s) 652
MhlI GDGCHC 1 cut(s) 462
MluCI AATT 5 cut(s) 85, 148, 523, 677, 826
MlyI GAGTC 1 cut(s) 203
Mph1103I ATGCAT 2 cut(s) 6, 52
MseI TTAA 6 cut(s) 81, 147, 246, 330, 465, 582
MslI CAYNNNNRTG 1 cut(s) 465
MspI CCGG 1 cut(s) 414
MspR9I CCNGG 1 cut(s) 117
MunI CAATTG 1 cut(s) 826
MvaI CCWGG 1 cut(s) 117
NdeII GATC 3 cut(s) 565, 652, 706
NlaIII CATG 4 cut(s) 41, 244, 267, 805
NlaIV GGNNCC 1 cut(s) 654
NsiI ATGCAT 2 cut(s) 6, 52
NspI RCATGY 1 cut(s) 805
PfeI GAWTC 1 cut(s) 599
PkrI GCNGC 1 cut(s) 427
PleI GAGTC 1 cut(s) 202
PpsI GAGTC 1 cut(s) 202
PshBI ATTAAT 2 cut(s) 147, 465
Psp6I CCWGG 1 cut(s) 115
PspFI CCCAGC 1 cut(s) 352
PspGI CCWGG 1 cut(s) 115
PspN4I GGNNCC 1 cut(s) 654
PspPI GGNCC 1 cut(s) 516
PsuI RGATCY 1 cut(s) 652
RsaI GTAC 4 cut(s) 276, 532, 720, 798
RsaNI GTAC 4 cut(s) 275, 531, 719, 797
RseI CAYNNNNRTG 1 cut(s) 465
SaqAI TTAA 6 cut(s) 81, 147, 246, 330, 465, 582
SatI GCNGC 1 cut(s) 426
Sau3AI GATC 3 cut(s) 565, 652, 706
Sau96I GGNCC 1 cut(s) 516
SchI GAGTC 1 cut(s) 203
ScrFI CCNGG 1 cut(s) 117
SduI GDGCHC 1 cut(s) 462
SetI ASST 9 cut(s) 118, 145, 212, 294, 330, 427, 553, 664, 720
SinI GGWCC 1 cut(s) 516
SmiMI CAYNNNNRTG 1 cut(s) 465
SmlI CTYRAG 1 cut(s) 65
SmoI CTYRAG 1 cut(s) 65
SpeI ACTAGT 1 cut(s) 491
Sse9I AATT 5 cut(s) 85, 148, 523, 677, 826
SsiI CCGC 1 cut(s) 485
SspMI CTAG 1 cut(s) 492
StyD4I CCNGG 1 cut(s) 115
TaaI ACNGT 2 cut(s) 104, 516
TaqI TCGA 1 cut(s) 511
TaqII GACCGA 1 cut(s) 420
TasI AATT 5 cut(s) 85, 148, 523, 677, 826
TfiI GAWTC 1 cut(s) 599
Tru1I TTAA 6 cut(s) 81, 147, 246, 330, 465, 582
Tru9I TTAA 6 cut(s) 81, 147, 246, 330, 465, 582
TscAI CASTG 1 cut(s) 307
TseI GCWGC 1 cut(s) 425
TspDTI ATGAA 6 cut(s) 54, 240, 461, 483, 489, 797
TspRI CASTG 1 cut(s) 307
VpaK11BI GGWCC 1 cut(s) 516
VspI ATTAAT 2 cut(s) 147, 465
XapI RAATTY 1 cut(s) 85
XceI RCATGY 1 cut(s) 805
XspI CTAG 1 cut(s) 492
Zsp2I ATGCAT 2 cut(s) 6, 52
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.