pycom04g11770
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0000261
Physical Location & Seq
Reverse (-)
14699261 .. 14699776
516 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g11770.2

Sequence Viewer

Length: 438 bp
ATGGCTTCTTTGATAGATTATATGGCCACCTCACGTAATTGGATCGATCATGATGAGGATGTACTGCTTACCATCCACGAGGAGATGGTAGTTGATGGTGTTAGGTGTGAGACCGGCAGTTTTAAGGCTGGTACATTTGTAATGGTTGCCACCAAGATGAGGGATATGATTCCAGGCATTAGTATAAAGCCAAAACATATACAAAACAAGCTGAAGCATATAAAAGAAAAGTATTCCTCTACATATGACATGATGAATACCTCTGGATTTGTTTGGGATGACGAAAAAAAATGTGTTGTTGTGGATAGTGACGATGTACTTCAGCTGTGGGTGAAGAAACATCCTAATGCATCTTACAAACCAAATAAGCCATTTCCGTTGTATCCACGCTTGTGTACGGTGTTTGGGAAAGACCGAGCCATGGGTAGTATGGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

146

Amino Acids

16.59

Weight (kDa)

7.72

Isoelectric Point (pI)

34.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000261)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18411 FvH4_1g22560 FvH4_1g24290 FvH4_1g24290 FvH4_1g24290 FvH4_1g29434 FvH4_2g04031 FvH4_2g04811 FvH4_2g07610 FvH4_2g09412 FvH4_3g15552 FvH4_3g30720 FvH4_4g05810 FvH4_4g09541 FvH4_4g15171 FvH4_6g09145 FvH4_6g49541 FvH4_7g00320 FvH4_7g11552
malus_domestica MD00G1072400.v1.1 MD01G1188100.v1.1 MD07G1132000.v1.1 MD08G1190700.v1.1 MD10G1011200.v1.1 MD14G1164100.v1.1 MD15G1289200.v1.1 MD15G1289300.v1.1 MD17G1245100.v1.1
prunus_persica Prupe.6G228600_v2.0.a1
pyrus_communis pycom01g07070 pycom02g06890 pycom02g06900 pycom02g13930 pycom04g07470 pycom04g11770 pycom04g21930 pycom05g08520 pycom06g04490 pycom06g09560 pycom07g03750 pycom08g08760 pycom08g13660 pycom09g11520 pycom09g14250 pycom09g14770 pycom10g00720 pycom10g01290 pycom10g10480 pycom10g15700 pycom12420g00130 pycom12g05380 pycom12g08750 pycom13g19010 pycom13g29080 pycom14g06210 pycom14g13680 pycom14g19850 pycom15g22070 pycom15g23440 pycom15g24950 pycom15g25280 pycom16g11100 pycom16g17080 pycom16g26310 pycom17g15650 pycom17g15670 pycom17g20370
rosa_chinensis RchiOBHm_Chr1g0373591 RchiOBHm_Chr2g0105551 RchiOBHm_Chr2g0106711 RchiOBHm_Chr2g0106721 RchiOBHm_Chr7g0219611
rosa_laevigata RLG00000013773 RLG00000017436 RLG00000017533
rosa_multiflora Rmu_co8001842.1_g000001 Rmu_co8158450.1_g000001 Rmu_sc0000516.1_g000067 Rmu_sc0000566.1_g000009 Rmu_sc0000965.1_g000025 Rmu_sc0001718.1_g000001 Rmu_sc0001719.1_g000020 Rmu_sc0001822.1_g000025 Rmu_sc0002219.1_g000003 Rmu_sc0002460.1_g000059 Rmu_sc0002757.1_g000001 Rmu_sc0002860.1_g000001 Rmu_sc0004531.1_g000001 Rmu_sc0005558.1_g000003 Rmu_sc0011218.1_g000001 Rmu_sc0011998.1_g000003 Rmu_sc0015560.1_g000002 Rmu_sc0015560.1_g000003
rosa_roxburghii Rroxscaffold_1G00004200 Rroxscaffold_1G00026570 Rroxscaffold_1G00040370 Rroxscaffold_1G00044120 Rroxscaffold_1G00049590 Rroxscaffold_1G00059030 Rroxscaffold_2G00108440 Rroxscaffold_2G00108850 Rroxscaffold_2G00130680 Rroxscaffold_2G00132980 Rroxscaffold_2G00136860 Rroxscaffold_3G00218610 Rroxscaffold_4G00309940 Rroxscaffold_6G00405560
rosa_rugosa Rorug02G0138000 Rorug02G0138100 Rorug02G0138100 Rorug06G0154000
rosa_samantha Rh1AG121500 Rh1CG116300 Rh2AG189000 Rh2AG509600 Rh2BG200200 Rh2CG194100 Rh2DG195300 Rh5AG114400 Rh5DG488800
rosa_wichuraiana Rw0G022020 Rw1G023650 Rw1G026380 Rw1G034750 Rw1G040770 Rw2G014870 Rw2G016560 Rw4G031190 Rw5G026570 Rw6G003020 Rw6G012060 Rw7G014300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 50
AcoI YGGCCR 1 cut(s) 24
AcuI CTGAAG 2 cut(s) 233, 305
AfaI GTAC 4 cut(s) 63, 133, 318, 397
AfiI CCNNNNNNNGG 2 cut(s) 159, 421
AjnI CCWGG 1 cut(s) 172
AleI CACNNNNGTG 1 cut(s) 391
AluBI AGCT 2 cut(s) 211, 325
AluI AGCT 2 cut(s) 211, 325
Alw26I GTCTC 1 cut(s) 104
AlwI GGATC 1 cut(s) 50
AoxI GGCC 1 cut(s) 24
AsuHPI GGTGA 1 cut(s) 343
BaeI ACNNNNGTAYC 2 cut(s) 123, 156
BalI TGGCCA 1 cut(s) 26
BauI CACGAG 1 cut(s) 77
BccI CCATC 3 cut(s) 79, 80, 89
BciT130I CCWGG 1 cut(s) 174
BciVI GTATCC 1 cut(s) 393
BcoDI GTCTC 1 cut(s) 104
BfuI GTATCC 1 cut(s) 393
Bme1390I CCNGG 1 cut(s) 174
BmrFI CCNGG 1 cut(s) 174
BmsI GCATC 1 cut(s) 359
Bsa29I ATCGAT 1 cut(s) 45
BsaAI YACGTR 1 cut(s) 35
BsaI GGTCTC 1 cut(s) 104
BsaJI CCNNGG 1 cut(s) 420
Bsc4I CCNNNNNNNGG 2 cut(s) 159, 421
Bse118I RCCGGY 1 cut(s) 113
BseBI CCWGG 1 cut(s) 174
BseCI ATCGAT 1 cut(s) 45
BseDI CCNNGG 1 cut(s) 420
BseGI GGATG 4 cut(s) 64, 72, 283, 340
BseLI CCNNNNNNNGG 2 cut(s) 159, 421
BseRI GAGGAG 1 cut(s) 95
BshFI GGCC 1 cut(s) 26
BshVI ATCGAT 1 cut(s) 45
BsiSI CCGG 1 cut(s) 114
BslI CCNNNNNNNGG 2 cut(s) 159, 421
BsmAI GTCTC 1 cut(s) 104
BsnI GGCC 1 cut(s) 26
Bso31I GGTCTC 1 cut(s) 104
Bsp143I GATC 2 cut(s) 42, 46
Bsp19I CCATGG 1 cut(s) 420
BspANI GGCC 1 cut(s) 26
BspDI ATCGAT 1 cut(s) 45
BspHI TCATGA 1 cut(s) 49
BspPI GGATC 1 cut(s) 50
BspTNI GGTCTC 1 cut(s) 104
BsrFI RCCGGY 1 cut(s) 113
BssAI RCCGGY 1 cut(s) 113
BssECI CCNNGG 1 cut(s) 420
BssMI GATC 2 cut(s) 42, 46
BssSI CACGAG 1 cut(s) 77
BssT1I CCWWGG 1 cut(s) 420
Bst2BI CACGAG 1 cut(s) 77
Bst2UI CCWGG 1 cut(s) 174
Bst4CI ACNGT 1 cut(s) 400
BstBAI YACGTR 1 cut(s) 35
BstDSI CCRYGG 1 cut(s) 420
BstF5I GGATG 4 cut(s) 64, 72, 283, 340
BstKTI GATC 2 cut(s) 45, 49
BstMAI GTCTC 1 cut(s) 104
BstMBI GATC 2 cut(s) 42, 46
BstNI CCWGG 1 cut(s) 174
BstSCI CCNGG 1 cut(s) 172
Bsu15I ATCGAT 1 cut(s) 45
BsuI GTATCC 1 cut(s) 393
BsuRI GGCC 1 cut(s) 26
BsuTUI ATCGAT 1 cut(s) 45
BtgI CCRYGG 1 cut(s) 420
BtsCI GGATG 4 cut(s) 64, 72, 283, 340
CciI TCATGA 1 cut(s) 49
Cfr10I RCCGGY 1 cut(s) 113
ClaI ATCGAT 1 cut(s) 45
Csp6I GTAC 4 cut(s) 62, 132, 317, 396
CviAII CATG 3 cut(s) 50, 250, 421
CviJI RGCY 9 cut(s) 5, 26, 128, 190, 211, 325, 370, 419, 434
CviKI_1 RGCY 9 cut(s) 5, 26, 128, 190, 211, 325, 370, 419, 434
CviQI GTAC 4 cut(s) 62, 132, 317, 396
DpnI GATC 2 cut(s) 44, 48
DpnII GATC 2 cut(s) 42, 46
EaeI YGGCCR 1 cut(s) 24
Eco130I CCWWGG 1 cut(s) 420
Eco31I GGTCTC 1 cut(s) 104
Eco57I CTGAAG 2 cut(s) 233, 305
EcoRII CCWGG 1 cut(s) 172
EcoT14I CCWWGG 1 cut(s) 420
EcoT22I ATGCAT 1 cut(s) 352
ErhI CCWWGG 1 cut(s) 420
FaeI CATG 3 cut(s) 53, 253, 424
FatI CATG 3 cut(s) 49, 249, 420
FauNDI CATATG 1 cut(s) 244
FokI GGATG 4 cut(s) 59, 71, 290, 327
HaeIII GGCC 1 cut(s) 26
HapII CCGG 1 cut(s) 114
Hin1II CATG 3 cut(s) 53, 253, 424
HinfI GANTC 1 cut(s) 169
HpaII CCGG 1 cut(s) 114
HphI GGTGA 1 cut(s) 343
Hpy166II GTNNAC 1 cut(s) 396
Hpy188III TCNNGA 2 cut(s) 50, 264
Hpy8I GTNNAC 1 cut(s) 396
HpyCH4III ACNGT 1 cut(s) 400
HpyCH4IV ACGT 1 cut(s) 34
HpyCH4V TGCA 1 cut(s) 350
HpySE526I ACGT 1 cut(s) 34
Hsp92II CATG 3 cut(s) 53, 253, 424
Kzo9I GATC 2 cut(s) 42, 46
LpnPI CCDG 5 cut(s) 114, 127, 159, 186, 249
LweI GCATC 1 cut(s) 359
MaeII ACGT 1 cut(s) 34
MaeIII GTNAC 1 cut(s) 308
MalI GATC 2 cut(s) 44, 48
MboI GATC 2 cut(s) 42, 46
MboII GAAGA 1 cut(s) 346
MlsI TGGCCA 1 cut(s) 26
MluCI AATT 1 cut(s) 37
MluNI TGGCCA 1 cut(s) 26
MnlI CCTC 6 cut(s) 40, 49, 73, 153, 247, 271
Mox20I TGGCCA 1 cut(s) 26
Mph1103I ATGCAT 1 cut(s) 352
MscI TGGCCA 1 cut(s) 26
MseI TTAA 2 cut(s) 123, 436
MslI CAYNNNNRTG 3 cut(s) 155, 345, 391
Msp20I TGGCCA 1 cut(s) 26
MspA1I CMGCKG 1 cut(s) 325
MspI CCGG 1 cut(s) 114
MspR9I CCNGG 1 cut(s) 174
MvaI CCWGG 1 cut(s) 174
NcoI CCATGG 1 cut(s) 420
NdeI CATATG 1 cut(s) 244
NdeII GATC 2 cut(s) 42, 46
NlaIII CATG 3 cut(s) 53, 253, 424
NmuCI GTSAC 1 cut(s) 308
NsiI ATGCAT 1 cut(s) 352
OliI CACNNNNGTG 1 cut(s) 391
PagI TCATGA 1 cut(s) 49
PfeI GAWTC 1 cut(s) 169
Ppu21I YACGTR 1 cut(s) 35
Psp6I CCWGG 1 cut(s) 172
PspGI CCWGG 1 cut(s) 172
PvuII CAGCTG 1 cut(s) 325
RsaI GTAC 4 cut(s) 63, 133, 318, 397
RsaNI GTAC 4 cut(s) 62, 132, 317, 396
RseI CAYNNNNRTG 3 cut(s) 155, 345, 391
SaqAI TTAA 2 cut(s) 123, 436
Sau3AI GATC 2 cut(s) 42, 46
ScrFI CCNGG 1 cut(s) 174
SetI ASST 6 cut(s) 32, 37, 107, 213, 263, 327
SfaNI GCATC 1 cut(s) 359
SmiMI CAYNNNNRTG 3 cut(s) 155, 345, 391
Sse9I AATT 1 cut(s) 37
StyD4I CCNGG 1 cut(s) 172
StyI CCWWGG 1 cut(s) 420
TaaI ACNGT 1 cut(s) 400
TaiI ACGT 1 cut(s) 37
TaqI TCGA 1 cut(s) 45
TaqII GACCGA 1 cut(s) 429
TasI AATT 1 cut(s) 37
TatI WGTACW 2 cut(s) 61, 316
TfiI GAWTC 1 cut(s) 169
Tru1I TTAA 2 cut(s) 123, 436
Tru9I TTAA 2 cut(s) 123, 436
TseFI GTSAC 1 cut(s) 308
Tsp45I GTSAC 1 cut(s) 308
TspDTI ATGAA 1 cut(s) 269
TspGWI ACGGA 1 cut(s) 366
XcmI CCANNNNNNNNNTGG 1 cut(s) 427
Zsp2I ATGCAT 1 cut(s) 352
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.