pycom09g14250
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0000261
Physical Location & Seq
Reverse (-)
13708874 .. 13709672
799 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g14250.1

Sequence Viewer

Length: 720 bp
ATGGCCACCTCACATAATTGGATTGATCATGAGAAAGATGTACTACTTACCATCCTCGAGGAGATGGTTGCTGATGGTGTTAGATGTGAGACCGGCAGTTTTAAGGCTGGTACTTTTGTAACGGTTGCCTCCAAGATCAGGGAACAGATTCCTGGCATTAATATAGAGCTGAAGCATATACAAAACATATTGAAGCGCTTGAAAGAAAAGTATTCGTCTGCATATGACATGATGAATACATCTGGATTTGGTTGGGATGATGAGAAAAAATGTGTTGTTGTGGATAGTGACGAAACACAACAGGAGTGGGTGAAGAAACATCCCAATGCATCTTGCAAACCAAATAAGTCATTCTCGTTGTATCCACAGTTATGTACGGTGTTTGGGAGAGACCGAGCCACAGGTAGCATTGCTAAATTAGCAACAGATGCAATTGAAAATATAGGTTTGGAAAGTGAGGATTGTGAGACTTCCGAGATGCCTTCGCTTTCACCTACCCCATCTCCTTTAGTTGCTACATCTAGTGCTTCTCAACCTGTTTGGAAGAGGAAGAGGAGTAGGAATGATGGTGATGCAAATATTGTATCTGTTATTAGTGAAGGTTGGAATAAAGCTGTTACTGAAATGAAGAAATTAGGTGAAAGTTTTACTTTTAGAGAAGCAAAAGCCAGACTATCTTCTGAGCTTCAGGCCATAGGTCTCCGATCGATCAGGTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

240

Amino Acids

26.58

Weight (kDa)

6.46

Isoelectric Point (pI)

59.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_3 PF12776 7 - 95 2.3e-09 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000261)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18411 FvH4_1g22560 FvH4_1g24290 FvH4_1g24290 FvH4_1g24290 FvH4_1g29434 FvH4_2g04031 FvH4_2g04811 FvH4_2g07610 FvH4_2g09412 FvH4_3g15552 FvH4_3g30720 FvH4_4g05810 FvH4_4g09541 FvH4_4g15171 FvH4_6g09145 FvH4_6g49541 FvH4_7g00320 FvH4_7g11552
malus_domestica MD00G1072400.v1.1 MD01G1188100.v1.1 MD07G1132000.v1.1 MD08G1190700.v1.1 MD10G1011200.v1.1 MD14G1164100.v1.1 MD15G1289200.v1.1 MD15G1289300.v1.1 MD17G1245100.v1.1
prunus_persica Prupe.6G228600_v2.0.a1
pyrus_communis pycom01g07070 pycom02g06890 pycom02g06900 pycom02g13930 pycom04g07470 pycom04g11770 pycom04g21930 pycom05g08520 pycom06g04490 pycom06g09560 pycom07g03750 pycom08g08760 pycom08g13660 pycom09g11520 pycom09g14250 pycom09g14770 pycom10g00720 pycom10g01290 pycom10g10480 pycom10g15700 pycom12420g00130 pycom12g05380 pycom12g08750 pycom13g19010 pycom13g29080 pycom14g06210 pycom14g13680 pycom14g19850 pycom15g22070 pycom15g23440 pycom15g24950 pycom15g25280 pycom16g11100 pycom16g17080 pycom16g26310 pycom17g15650 pycom17g15670 pycom17g20370
rosa_chinensis RchiOBHm_Chr1g0373591 RchiOBHm_Chr2g0105551 RchiOBHm_Chr2g0106711 RchiOBHm_Chr2g0106721 RchiOBHm_Chr7g0219611
rosa_laevigata RLG00000013773 RLG00000017436 RLG00000017533
rosa_multiflora Rmu_co8001842.1_g000001 Rmu_co8158450.1_g000001 Rmu_sc0000516.1_g000067 Rmu_sc0000566.1_g000009 Rmu_sc0000965.1_g000025 Rmu_sc0001718.1_g000001 Rmu_sc0001719.1_g000020 Rmu_sc0001822.1_g000025 Rmu_sc0002219.1_g000003 Rmu_sc0002460.1_g000059 Rmu_sc0002757.1_g000001 Rmu_sc0002860.1_g000001 Rmu_sc0004531.1_g000001 Rmu_sc0005558.1_g000003 Rmu_sc0011218.1_g000001 Rmu_sc0011998.1_g000003 Rmu_sc0015560.1_g000002 Rmu_sc0015560.1_g000003
rosa_roxburghii Rroxscaffold_1G00004200 Rroxscaffold_1G00026570 Rroxscaffold_1G00040370 Rroxscaffold_1G00044120 Rroxscaffold_1G00049590 Rroxscaffold_1G00059030 Rroxscaffold_2G00108440 Rroxscaffold_2G00108850 Rroxscaffold_2G00130680 Rroxscaffold_2G00132980 Rroxscaffold_2G00136860 Rroxscaffold_3G00218610 Rroxscaffold_4G00309940 Rroxscaffold_6G00405560
rosa_rugosa Rorug02G0138000 Rorug02G0138100 Rorug02G0138100 Rorug06G0154000
rosa_samantha Rh1AG121500 Rh1CG116300 Rh2AG189000 Rh2AG509600 Rh2BG200200 Rh2CG194100 Rh2DG195300 Rh5AG114400 Rh5DG488800
rosa_wichuraiana Rw0G022020 Rw1G023650 Rw1G026380 Rw1G034750 Rw1G040770 Rw2G014870 Rw2G016560 Rw4G031190 Rw5G026570 Rw6G003020 Rw6G012060 Rw7G014300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 56
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 2 cut(s) 191, 671
AfaI GTAC 3 cut(s) 42, 112, 376
AfeI AGCGCT 1 cut(s) 197
AfiI CCNNNNNNNGG 1 cut(s) 138
AgsI TTSAA 3 cut(s) 193, 202, 437
AjnI CCWGG 1 cut(s) 151
AluBI AGCT 3 cut(s) 169, 614, 685
AluI AGCT 3 cut(s) 169, 614, 685
Alw26I GTCTC 4 cut(s) 83, 384, 461, 704
Ama87I CYCGRG 1 cut(s) 56
Aor51HI AGCGCT 1 cut(s) 197
AoxI GGCC 2 cut(s) 3, 690
AseI ATTAAT 1 cut(s) 159
Asp700I GAANNNNTTC 1 cut(s) 147
AspLEI GCGC 1 cut(s) 198
AsuHPI GGTGA 4 cut(s) 322, 483, 581, 650
AvaI CYCGRG 1 cut(s) 56
BaeI ACNNNNGTAYC 2 cut(s) 102, 135
BalI TGGCCA 1 cut(s) 5
BccI CCATC 5 cut(s) 58, 59, 68, 508, 560
BciT130I CCWGG 1 cut(s) 153
BciVI GTATCC 1 cut(s) 372
BclI TGATCA 1 cut(s) 25
BcoDI GTCTC 4 cut(s) 83, 384, 461, 704
BfaI CTAG 1 cut(s) 522
BfoI RGCGCY 1 cut(s) 199
BfuI GTATCC 1 cut(s) 372
Bme1390I CCNGG 1 cut(s) 153
BmeT110I CYCGRG 1 cut(s) 56
BmrFI CCNGG 1 cut(s) 153
BmsI GCATC 4 cut(s) 338, 418, 468, 562
Bsa29I ATCGAT 1 cut(s) 707
BsaI GGTCTC 3 cut(s) 83, 384, 704
BsaXI ACNNNNNCTCC 2 cut(s) 487, 517
Bsc4I CCNNNNNNNGG 1 cut(s) 138
Bse118I RCCGGY 1 cut(s) 92
Bse3DI GCAATG 1 cut(s) 408
BseBI CCWGG 1 cut(s) 153
BseCI ATCGAT 1 cut(s) 707
BseGI GGATG 3 cut(s) 51, 262, 319
BseLI CCNNNNNNNGG 1 cut(s) 138
BseMI GCAATG 1 cut(s) 408
BseMII CTCAG 1 cut(s) 672
BseRI GAGGAG 2 cut(s) 74, 568
Bsh1285I CGRYCG 1 cut(s) 707
BshFI GGCC 2 cut(s) 5, 692
BshVI ATCGAT 1 cut(s) 707
BsiEI CGRYCG 1 cut(s) 707
BsiHKCI CYCGRG 1 cut(s) 56
BsiSI CCGG 1 cut(s) 93
BslI CCNNNNNNNGG 1 cut(s) 138
BsmAI GTCTC 4 cut(s) 83, 384, 461, 704
BsnI GGCC 2 cut(s) 5, 692
Bso31I GGTCTC 3 cut(s) 83, 384, 704
BsoBI CYCGRG 1 cut(s) 56
Bsp143I GATC 4 cut(s) 25, 135, 704, 708
BspANI GGCC 2 cut(s) 5, 692
BspCNI CTCAG 1 cut(s) 673
BspDI ATCGAT 1 cut(s) 707
BspHI TCATGA 1 cut(s) 28
BspTNI GGTCTC 3 cut(s) 83, 384, 704
BsrDI GCAATG 1 cut(s) 408
BsrFI RCCGGY 1 cut(s) 92
BssAI RCCGGY 1 cut(s) 92
BssMI GATC 4 cut(s) 25, 135, 704, 708
Bst2UI CCWGG 1 cut(s) 153
Bst4CI ACNGT 3 cut(s) 124, 369, 379
Bst6I CTCTTC 2 cut(s) 539, 545
BstAPI GCANNNNNTGC 1 cut(s) 428
BstDEI CTNAG 1 cut(s) 681
BstF5I GGATG 3 cut(s) 51, 262, 319
BstH2I RGCGCY 1 cut(s) 199
BstHHI GCGC 1 cut(s) 198
BstKTI GATC 4 cut(s) 28, 138, 707, 711
BstMAI GTCTC 4 cut(s) 83, 384, 461, 704
BstMBI GATC 4 cut(s) 25, 135, 704, 708
BstMCI CGRYCG 1 cut(s) 707
BstMWI GCNNNNNNNGC 2 cut(s) 419, 428
BstNI CCWGG 1 cut(s) 153
BstSCI CCNGG 1 cut(s) 151
Bsu15I ATCGAT 1 cut(s) 707
BsuI GTATCC 1 cut(s) 372
BsuRI GGCC 2 cut(s) 5, 692
BsuTUI ATCGAT 1 cut(s) 707
BtsCI GGATG 3 cut(s) 51, 262, 319
CciI TCATGA 1 cut(s) 28
CfoI GCGC 1 cut(s) 198
Cfr10I RCCGGY 1 cut(s) 92
ClaI ATCGAT 1 cut(s) 707
Csp6I GTAC 3 cut(s) 41, 111, 375
CspCI CAANNNNNGTGG 2 cut(s) 287, 322
CviAII CATG 2 cut(s) 29, 229
CviJI RGCY 8 cut(s) 5, 107, 169, 398, 614, 668, 685, 692
CviKI_1 RGCY 8 cut(s) 5, 107, 169, 398, 614, 668, 685, 692
CviQI GTAC 3 cut(s) 41, 111, 375
DdeI CTNAG 1 cut(s) 681
DpnI GATC 4 cut(s) 27, 137, 706, 710
DpnII GATC 4 cut(s) 25, 135, 704, 708
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 2 cut(s) 539, 545
EarI CTCTTC 2 cut(s) 539, 545
Eco31I GGTCTC 3 cut(s) 83, 384, 704
Eco47III AGCGCT 1 cut(s) 197
Eco57I CTGAAG 2 cut(s) 191, 671
Eco88I CYCGRG 1 cut(s) 56
EcoRII CCWGG 1 cut(s) 151
EcoT22I ATGCAT 1 cut(s) 331
FaeI CATG 2 cut(s) 32, 232
FalI AAGNNNNNCTT 2 cut(s) 634, 666
FatI CATG 2 cut(s) 28, 228
FauNDI CATATG 1 cut(s) 223
FbaI TGATCA 1 cut(s) 25
FokI GGATG 3 cut(s) 38, 269, 306
FspBI CTAG 1 cut(s) 522
GlaI GCGC 1 cut(s) 197
HaeII RGCGCY 1 cut(s) 199
HaeIII GGCC 2 cut(s) 5, 692
HapII CCGG 1 cut(s) 93
HhaI GCGC 1 cut(s) 198
Hin1II CATG 2 cut(s) 32, 232
Hin6I GCGC 1 cut(s) 196
HinP1I GCGC 1 cut(s) 196
HinfI GANTC 1 cut(s) 148
HpaII CCGG 1 cut(s) 93
HphI GGTGA 4 cut(s) 322, 483, 581, 650
Hpy188I TCNGA 3 cut(s) 475, 682, 704
Hpy188III TCNNGA 2 cut(s) 29, 243
HpyAV CCTTC 2 cut(s) 492, 593
HpyCH4III ACNGT 3 cut(s) 124, 369, 379
HpyCH4V TGCA 5 cut(s) 221, 329, 336, 431, 575
HpyF10VI GCNNNNNNNGC 2 cut(s) 419, 428
HpyF3I CTNAG 1 cut(s) 681
Hsp92II CATG 2 cut(s) 32, 232
HspAI GCGC 1 cut(s) 196
Ksp22I TGATCA 1 cut(s) 25
Kzo9I GATC 4 cut(s) 25, 135, 704, 708
LweI GCATC 4 cut(s) 338, 418, 468, 562
MaeI CTAG 1 cut(s) 522
MaeIII GTNAC 3 cut(s) 118, 287, 616
MalI GATC 4 cut(s) 27, 137, 706, 710
MboI GATC 4 cut(s) 25, 135, 704, 708
MboII GAAGA 5 cut(s) 325, 556, 562, 640, 669
MfeI CAATTG 1 cut(s) 432
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 4 cut(s) 16, 416, 432, 632
MluNI TGGCCA 1 cut(s) 5
MmeI TCCRAC 1 cut(s) 584
MnlI CCTC 7 cut(s) 19, 52, 65, 139, 451, 540, 546
Mox20I TGGCCA 1 cut(s) 5
Mph1103I ATGCAT 1 cut(s) 331
MroXI GAANNNNTTC 1 cut(s) 147
MscI TGGCCA 1 cut(s) 5
MseI TTAA 3 cut(s) 102, 159, 718
MslI CAYNNNNRTG 2 cut(s) 324, 370
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 1 cut(s) 93
MspR9I CCNGG 1 cut(s) 153
MunI CAATTG 1 cut(s) 432
MvaI CCWGG 1 cut(s) 153
MwoI GCNNNNNNNGC 2 cut(s) 419, 428
NdeI CATATG 1 cut(s) 223
NdeII GATC 4 cut(s) 25, 135, 704, 708
NlaIII CATG 2 cut(s) 32, 232
NmuCI GTSAC 1 cut(s) 287
NsiI ATGCAT 1 cut(s) 331
PaeR7I CTCGAG 1 cut(s) 56
PagI TCATGA 1 cut(s) 28
PdmI GAANNNNTTC 1 cut(s) 147
PfeI GAWTC 1 cut(s) 148
Ple19I CGATCG 1 cut(s) 707
PshBI ATTAAT 1 cut(s) 159
Psp6I CCWGG 1 cut(s) 151
PspGI CCWGG 1 cut(s) 151
PspXI VCTCGAGB 1 cut(s) 56
PvuI CGATCG 1 cut(s) 707
RsaI GTAC 3 cut(s) 42, 112, 376
RsaNI GTAC 3 cut(s) 41, 111, 375
RseI CAYNNNNRTG 2 cut(s) 324, 370
SaqAI TTAA 3 cut(s) 102, 159, 718
Sau3AI GATC 4 cut(s) 25, 135, 704, 708
ScrFI CCNGG 1 cut(s) 153
SfaNI GCATC 4 cut(s) 338, 418, 468, 562
Sfr274I CTCGAG 1 cut(s) 56
SlaI CTCGAG 1 cut(s) 56
SmiMI CAYNNNNRTG 2 cut(s) 324, 370
SmlI CTYRAG 1 cut(s) 56
SmoI CTYRAG 1 cut(s) 56
Sse9I AATT 4 cut(s) 16, 416, 432, 632
SspI AATATT 1 cut(s) 580
SspMI CTAG 1 cut(s) 522
StyD4I CCNGG 1 cut(s) 151
TaaI ACNGT 3 cut(s) 124, 369, 379
TaqI TCGA 2 cut(s) 57, 707
TaqII GACCGA 1 cut(s) 408
TasI AATT 4 cut(s) 16, 416, 432, 632
TatI WGTACW 1 cut(s) 40
TfiI GAWTC 1 cut(s) 148
Tru1I TTAA 3 cut(s) 102, 159, 718
Tru9I TTAA 3 cut(s) 102, 159, 718
TseFI GTSAC 1 cut(s) 287
Tsp45I GTSAC 1 cut(s) 287
TspDTI ATGAA 2 cut(s) 248, 641
VspI ATTAAT 1 cut(s) 159
XhoI CTCGAG 1 cut(s) 56
XmnI GAANNNNTTC 1 cut(s) 147
XspI CTAG 1 cut(s) 522
Zsp2I ATGCAT 1 cut(s) 331
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.