pycom13g19010
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0000261
Physical Location & Seq
Reverse (-)
15029701 .. 15030156
456 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g19010.1

Sequence Viewer

Length: 456 bp
ATGCTTGAGCACATTAGTTTTGGGAAAGACCAAGCAACCGGAGTAGGAGCTGCAACTCCTACTGAGATGATGAATGAGCCTGAGCACATTAGTGAAGATGAAGATGAGGTGGAGACTAGTTCTCCCTATGTTGCTCGACGGTCCAGTAGTTCAAGTACCCGGAAAAGGAAGAGAGCTACTAATGATAATGATCTTGCTATGGCATTTAAAGAAATGCTTTCTGAATCAGTTGATAAGTTGGGTGAAGTTTTACAAGTTGCTTTTGGGAAAGGATTGAATCCAAAACCTGAGATTGTTTCAGAATTGTCAAAGATGGATTTGTCTATTGAGGATCAAATCAAGACACTAAATATCCTTTTCGAAAAGCCACAGAATGAGAGGACATTCTCGTCTTTGGATGGTGCAATGAAAAAAGCCTTTGTACTCATGTTACTTGGACAAAGTAACCCCAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

152

Amino Acids

16.71

Weight (kDa)

4.92

Isoelectric Point (pI)

56.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000261)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18411 FvH4_1g22560 FvH4_1g24290 FvH4_1g24290 FvH4_1g24290 FvH4_1g29434 FvH4_2g04031 FvH4_2g04811 FvH4_2g07610 FvH4_2g09412 FvH4_3g15552 FvH4_3g30720 FvH4_4g05810 FvH4_4g09541 FvH4_4g15171 FvH4_6g09145 FvH4_6g49541 FvH4_7g00320 FvH4_7g11552
malus_domestica MD00G1072400.v1.1 MD01G1188100.v1.1 MD07G1132000.v1.1 MD08G1190700.v1.1 MD10G1011200.v1.1 MD14G1164100.v1.1 MD15G1289200.v1.1 MD15G1289300.v1.1 MD17G1245100.v1.1
prunus_persica Prupe.6G228600_v2.0.a1
pyrus_communis pycom01g07070 pycom02g06890 pycom02g06900 pycom02g13930 pycom04g07470 pycom04g11770 pycom04g21930 pycom05g08520 pycom06g04490 pycom06g09560 pycom07g03750 pycom08g08760 pycom08g13660 pycom09g11520 pycom09g14250 pycom09g14770 pycom10g00720 pycom10g01290 pycom10g10480 pycom10g15700 pycom12420g00130 pycom12g05380 pycom12g08750 pycom13g19010 pycom13g29080 pycom14g06210 pycom14g13680 pycom14g19850 pycom15g22070 pycom15g23440 pycom15g24950 pycom15g25280 pycom16g11100 pycom16g17080 pycom16g26310 pycom17g15650 pycom17g15670 pycom17g20370
rosa_chinensis RchiOBHm_Chr1g0373591 RchiOBHm_Chr2g0105551 RchiOBHm_Chr2g0106711 RchiOBHm_Chr2g0106721 RchiOBHm_Chr7g0219611
rosa_laevigata RLG00000013773 RLG00000017436 RLG00000017533
rosa_multiflora Rmu_co8001842.1_g000001 Rmu_co8158450.1_g000001 Rmu_sc0000516.1_g000067 Rmu_sc0000566.1_g000009 Rmu_sc0000965.1_g000025 Rmu_sc0001718.1_g000001 Rmu_sc0001719.1_g000020 Rmu_sc0001822.1_g000025 Rmu_sc0002219.1_g000003 Rmu_sc0002460.1_g000059 Rmu_sc0002757.1_g000001 Rmu_sc0002860.1_g000001 Rmu_sc0004531.1_g000001 Rmu_sc0005558.1_g000003 Rmu_sc0011218.1_g000001 Rmu_sc0011998.1_g000003 Rmu_sc0015560.1_g000002 Rmu_sc0015560.1_g000003
rosa_roxburghii Rroxscaffold_1G00004200 Rroxscaffold_1G00026570 Rroxscaffold_1G00040370 Rroxscaffold_1G00044120 Rroxscaffold_1G00049590 Rroxscaffold_1G00059030 Rroxscaffold_2G00108440 Rroxscaffold_2G00108850 Rroxscaffold_2G00130680 Rroxscaffold_2G00132980 Rroxscaffold_2G00136860 Rroxscaffold_3G00218610 Rroxscaffold_4G00309940 Rroxscaffold_6G00405560
rosa_rugosa Rorug02G0138000 Rorug02G0138100 Rorug02G0138100 Rorug06G0154000
rosa_samantha Rh1AG121500 Rh1CG116300 Rh2AG189000 Rh2AG509600 Rh2BG200200 Rh2CG194100 Rh2DG195300 Rh5AG114400 Rh5DG488800
rosa_wichuraiana Rw0G022020 Rw1G023650 Rw1G026380 Rw1G034750 Rw1G040770 Rw2G014870 Rw2G016560 Rw4G031190 Rw5G026570 Rw6G003020 Rw6G012060 Rw7G014300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 388
AclWI GGATC 1 cut(s) 339
AfaI GTAC 2 cut(s) 157, 423
AfiI CCNNNNNNNGG 1 cut(s) 165
AgsI TTSAA 2 cut(s) 153, 277
AhlI ACTAGT 1 cut(s) 116
AleI CACNNNNGTG 1 cut(s) 90
AluBI AGCT 2 cut(s) 50, 176
AluI AGCT 2 cut(s) 50, 176
Alw21I GWGCWC 2 cut(s) 12, 87
Alw26I GTCTC 1 cut(s) 107
AlwI GGATC 1 cut(s) 339
ApeKI GCWGC 1 cut(s) 50
AspS9I GGNCC 1 cut(s) 141
AsuC2I CCSGG 1 cut(s) 160
AsuHPI GGTGA 1 cut(s) 254
AsuII TTCGAA 1 cut(s) 360
AvaII GGWCC 1 cut(s) 141
Bbv12I GWGCWC 2 cut(s) 12, 87
BbvI GCAGC 1 cut(s) 37
BccI CCATC 2 cut(s) 307, 392
BcnI CCSGG 1 cut(s) 160
BcoDI GTCTC 1 cut(s) 107
BcuI ACTAGT 1 cut(s) 116
BfaI CTAG 1 cut(s) 117
BisI GCNGC 1 cut(s) 51
BlsI GCNGC 1 cut(s) 52
Bme1390I CCNGG 1 cut(s) 160
Bme18I GGWCC 1 cut(s) 141
BmgT120I GGNCC 1 cut(s) 141
BmrFI CCNGG 1 cut(s) 160
Bpu10I CCTNAGC 1 cut(s) 81
Bpu14I TTCGAA 1 cut(s) 360
BpuEI CTTGAG 1 cut(s) 26
BpuMI CCSGG 1 cut(s) 160
BsaBI GATNNNNATC 1 cut(s) 189
BsaWI WCCGGW 1 cut(s) 38
BsaXI ACNNNNNCTCC 2 cut(s) 106, 136
Bsc4I CCNNNNNNNGG 1 cut(s) 165
Bse1I ACTGG 1 cut(s) 144
Bse3DI GCAATG 1 cut(s) 411
Bse8I GATNNNNATC 1 cut(s) 189
BseGI GGATG 1 cut(s) 403
BseJI GATNNNNATC 1 cut(s) 189
BseLI CCNNNNNNNGG 1 cut(s) 165
BseMI GCAATG 1 cut(s) 411
BseMII CTCAG 3 cut(s) 54, 72, 279
BseNI ACTGG 1 cut(s) 144
BseXI GCAGC 1 cut(s) 37
BsiHKAI GWGCWC 2 cut(s) 12, 87
BsiSI CCGG 2 cut(s) 39, 160
BslI CCNNNNNNNGG 1 cut(s) 165
BsmAI GTCTC 1 cut(s) 107
Bsp119I TTCGAA 1 cut(s) 360
Bsp1286I GDGCHC 2 cut(s) 12, 87
Bsp143I GATC 2 cut(s) 190, 331
BspCNI CTCAG 3 cut(s) 55, 73, 280
BspPI GGATC 1 cut(s) 339
BspT104I TTCGAA 1 cut(s) 360
BsrDI GCAATG 1 cut(s) 411
BsrI ACTGG 1 cut(s) 144
BssMI GATC 2 cut(s) 190, 331
Bst4CI ACNGT 1 cut(s) 141
Bst6I CTCTTC 1 cut(s) 164
BstBI TTCGAA 1 cut(s) 360
BstDEI CTNAG 3 cut(s) 63, 81, 288
BstF5I GGATG 1 cut(s) 403
BstKTI GATC 2 cut(s) 193, 334
BstMAI GTCTC 1 cut(s) 107
BstMBI GATC 2 cut(s) 190, 331
BstSCI CCNGG 1 cut(s) 158
BstV1I GCAGC 1 cut(s) 37
BtsCI GGATG 1 cut(s) 403
Cfr13I GGNCC 1 cut(s) 141
Csp6I GTAC 2 cut(s) 156, 422
CviAII CATG 1 cut(s) 427
CviJI RGCY 5 cut(s) 50, 79, 176, 367, 416
CviKI_1 RGCY 5 cut(s) 50, 79, 176, 367, 416
CviQI GTAC 2 cut(s) 156, 422
DdeI CTNAG 3 cut(s) 63, 81, 288
DpnI GATC 2 cut(s) 192, 333
DpnII GATC 2 cut(s) 190, 331
DraI TTTAAA 1 cut(s) 208
DrdI GACNNNNNNGTC 1 cut(s) 388
DseDI GACNNNNNNGTC 1 cut(s) 388
Eam1104I CTCTTC 1 cut(s) 164
EarI CTCTTC 1 cut(s) 164
Eco47I GGWCC 1 cut(s) 141
FaeI CATG 1 cut(s) 430
FaiI YATR 3 cut(s) 129, 200, 428
FalI AAGNNNNNCTT 2 cut(s) 201, 233
FatI CATG 1 cut(s) 426
Fnu4HI GCNGC 1 cut(s) 51
FokI GGATG 1 cut(s) 410
Fsp4HI GCNGC 1 cut(s) 51
FspBI CTAG 1 cut(s) 117
GluI GCNGC 1 cut(s) 51
HapII CCGG 2 cut(s) 39, 160
Hin1II CATG 1 cut(s) 430
HinfI GANTC 2 cut(s) 224, 277
HpaII CCGG 2 cut(s) 39, 160
HphI GGTGA 1 cut(s) 254
Hpy188I TCNGA 2 cut(s) 223, 301
Hpy188III TCNNGA 1 cut(s) 340
Hpy99I CGWCG 1 cut(s) 141
HpyCH4III ACNGT 1 cut(s) 141
HpyCH4V TGCA 2 cut(s) 53, 404
HpyF3I CTNAG 3 cut(s) 63, 81, 288
Hsp92II CATG 1 cut(s) 430
Kzo9I GATC 2 cut(s) 190, 331
LmnI GCTCC 1 cut(s) 47
LpnPI CCDG 5 cut(s) 52, 93, 157, 173, 300
Lsp1109I GCAGC 1 cut(s) 37
MaeI CTAG 1 cut(s) 117
MaeIII GTNAC 2 cut(s) 429, 443
MalI GATC 2 cut(s) 192, 333
MboI GATC 2 cut(s) 190, 331
MboII GAAGA 3 cut(s) 107, 113, 181
MfeI CAATTG 1 cut(s) 451
MhlI GDGCHC 2 cut(s) 12, 87
MluCI AATT 2 cut(s) 302, 451
MnlI CCTC 3 cut(s) 100, 322, 372
MseI TTAA 1 cut(s) 207
MslI CAYNNNNRTG 1 cut(s) 90
MspI CCGG 2 cut(s) 39, 160
MspR9I CCNGG 1 cut(s) 160
MunI CAATTG 1 cut(s) 451
NciI CCSGG 1 cut(s) 160
NdeII GATC 2 cut(s) 190, 331
NlaIII CATG 1 cut(s) 430
NspV TTCGAA 1 cut(s) 360
OliI CACNNNNGTG 1 cut(s) 90
PfeI GAWTC 2 cut(s) 224, 277
PkrI GCNGC 1 cut(s) 52
PspPI GGNCC 1 cut(s) 141
RsaI GTAC 2 cut(s) 157, 423
RsaNI GTAC 2 cut(s) 156, 422
RseI CAYNNNNRTG 1 cut(s) 90
SaqAI TTAA 1 cut(s) 207
SatI GCNGC 1 cut(s) 51
Sau3AI GATC 2 cut(s) 190, 331
Sau96I GGNCC 1 cut(s) 141
ScrFI CCNGG 1 cut(s) 160
SduI GDGCHC 2 cut(s) 12, 87
SetI ASST 4 cut(s) 52, 111, 178, 289
SfuI TTCGAA 1 cut(s) 360
SinI GGWCC 1 cut(s) 141
SmiMI CAYNNNNRTG 1 cut(s) 90
SmlI CTYRAG 1 cut(s) 5
SmoI CTYRAG 1 cut(s) 5
SpeI ACTAGT 1 cut(s) 116
Sse9I AATT 2 cut(s) 302, 451
SspMI CTAG 1 cut(s) 117
StyD4I CCNGG 1 cut(s) 158
TaaI ACNGT 1 cut(s) 141
TaqI TCGA 2 cut(s) 136, 360
TasI AATT 2 cut(s) 302, 451
TatI WGTACW 1 cut(s) 421
TfiI GAWTC 2 cut(s) 224, 277
Tru1I TTAA 1 cut(s) 207
Tru9I TTAA 1 cut(s) 207
TseI GCWGC 1 cut(s) 50
TspDTI ATGAA 3 cut(s) 86, 114, 422
VpaK11BI GGWCC 1 cut(s) 141
XspI CTAG 1 cut(s) 117
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.