pycom04g07470
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0000261
Physical Location & Seq
Reverse (-)
8093407 .. 8094195
789 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g07470.1

Sequence Viewer

Length: 711 bp
ATGGCTTCTTTGATAGATTATATGGCCACCTCACGTAATTGGAATGATCATGACGAGGATGTACTGCTTACCATCCTCGAGGAGATGGTAGTTGATGGTGTTAGGTGTGAGACCGACAGTTTTAAGGCTAGTACATTTGTAATGGTTGCCACCAAGATGAGGGAGATGATTCCAGGCATTAATATAGAGTCAAAGCAAATACAAAACAAGCTAAAGCATCTGAAAGAAAAGTATTCCTCTGCATATGACATGATGAATACCTCTAGATTTGGTTGGGATGACGAAAAAAAATGTGTTGTTGTGGATAGTGACGATGTACTTCAGCTGTGGGTGAAGAAACATCCTAATGCATCTTACAAACCAAATAAGCCATTTCTGTTGTATCCACGCTTGTGTACGATGTTTGGGAGAGACCAAGCCATGGGTAGTATGGCTGAATCAGCAGCAGATGTAATCGAAAACATGGGATTGGAAAATAAGGATGGCGATGAGACCTTCGAGATGCCTCCAACTTCACCTACCCCATCTCCTTCTATTGGTACATCTAGTGCATCTCAACCTATTAGGAAGAGGAAAAGGAATAAGAATGATCGATCTGATGCAAATATTGTAGCTGTTATCCGTGAAGGTTGGGATAAAGCAGTTACTGAAATGAACAATTTAGGTGAAAGTTTTACTTTGAGAGAAGCGAAAGCCAGGTTACCTTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

237

Amino Acids

26.7

Weight (kDa)

5.55

Isoelectric Point (pI)

55.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 12 - 92 1.1e-08 Myb/SANT-like DNA-binding domain
Myb_DNA-bind_3 PF12776 13 - 103 4.4e-12 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000261)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18411 FvH4_1g22560 FvH4_1g24290 FvH4_1g24290 FvH4_1g24290 FvH4_1g29434 FvH4_2g04031 FvH4_2g04811 FvH4_2g07610 FvH4_2g09412 FvH4_3g15552 FvH4_3g30720 FvH4_4g05810 FvH4_4g09541 FvH4_4g15171 FvH4_6g09145 FvH4_6g49541 FvH4_7g00320 FvH4_7g11552
malus_domestica MD00G1072400.v1.1 MD01G1188100.v1.1 MD07G1132000.v1.1 MD08G1190700.v1.1 MD10G1011200.v1.1 MD14G1164100.v1.1 MD15G1289200.v1.1 MD15G1289300.v1.1 MD17G1245100.v1.1
prunus_persica Prupe.6G228600_v2.0.a1
pyrus_communis pycom01g07070 pycom02g06890 pycom02g06900 pycom02g13930 pycom04g07470 pycom04g11770 pycom04g21930 pycom05g08520 pycom06g04490 pycom06g09560 pycom07g03750 pycom08g08760 pycom08g13660 pycom09g11520 pycom09g14250 pycom09g14770 pycom10g00720 pycom10g01290 pycom10g10480 pycom10g15700 pycom12420g00130 pycom12g05380 pycom12g08750 pycom13g19010 pycom13g29080 pycom14g06210 pycom14g13680 pycom14g19850 pycom15g22070 pycom15g23440 pycom15g24950 pycom15g25280 pycom16g11100 pycom16g17080 pycom16g26310 pycom17g15650 pycom17g15670 pycom17g20370
rosa_chinensis RchiOBHm_Chr1g0373591 RchiOBHm_Chr2g0105551 RchiOBHm_Chr2g0106711 RchiOBHm_Chr2g0106721 RchiOBHm_Chr7g0219611
rosa_laevigata RLG00000013773 RLG00000017436 RLG00000017533
rosa_multiflora Rmu_co8001842.1_g000001 Rmu_co8158450.1_g000001 Rmu_sc0000516.1_g000067 Rmu_sc0000566.1_g000009 Rmu_sc0000965.1_g000025 Rmu_sc0001718.1_g000001 Rmu_sc0001719.1_g000020 Rmu_sc0001822.1_g000025 Rmu_sc0002219.1_g000003 Rmu_sc0002460.1_g000059 Rmu_sc0002757.1_g000001 Rmu_sc0002860.1_g000001 Rmu_sc0004531.1_g000001 Rmu_sc0005558.1_g000003 Rmu_sc0011218.1_g000001 Rmu_sc0011998.1_g000003 Rmu_sc0015560.1_g000002 Rmu_sc0015560.1_g000003
rosa_roxburghii Rroxscaffold_1G00004200 Rroxscaffold_1G00026570 Rroxscaffold_1G00040370 Rroxscaffold_1G00044120 Rroxscaffold_1G00049590 Rroxscaffold_1G00059030 Rroxscaffold_2G00108440 Rroxscaffold_2G00108850 Rroxscaffold_2G00130680 Rroxscaffold_2G00132980 Rroxscaffold_2G00136860 Rroxscaffold_3G00218610 Rroxscaffold_4G00309940 Rroxscaffold_6G00405560
rosa_rugosa Rorug02G0138000 Rorug02G0138100 Rorug02G0138100 Rorug06G0154000
rosa_samantha Rh1AG121500 Rh1CG116300 Rh2AG189000 Rh2AG509600 Rh2BG200200 Rh2CG194100 Rh2DG195300 Rh5AG114400 Rh5DG488800
rosa_wichuraiana Rw0G022020 Rw1G023650 Rw1G026380 Rw1G034750 Rw1G040770 Rw2G014870 Rw2G016560 Rw4G031190 Rw5G026570 Rw6G003020 Rw6G012060 Rw7G014300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 77
AccB7I CCANNNNNTGG 1 cut(s) 421
AcoI YGGCCR 1 cut(s) 24
AcuI CTGAAG 1 cut(s) 305
AfaI GTAC 5 cut(s) 63, 133, 318, 397, 541
AfiI CCNNNNNNNGG 3 cut(s) 159, 421, 536
AjnI CCWGG 2 cut(s) 172, 695
AleI CACNNNNGTG 1 cut(s) 391
AluBI AGCT 3 cut(s) 211, 325, 614
AluI AGCT 3 cut(s) 211, 325, 614
Alw26I GTCTC 3 cut(s) 104, 405, 485
AlwNI CAGNNNCTG 1 cut(s) 647
Ama87I CYCGRG 1 cut(s) 77
AoxI GGCC 1 cut(s) 24
ApeKI GCWGC 1 cut(s) 443
AseI ATTAAT 1 cut(s) 180
AsuHPI GGTGA 3 cut(s) 343, 507, 677
AvaI CYCGRG 1 cut(s) 77
BalI TGGCCA 1 cut(s) 26
BbvI GCAGC 1 cut(s) 455
BccI CCATC 5 cut(s) 79, 80, 89, 476, 532
BciT130I CCWGG 2 cut(s) 174, 697
BciVI GTATCC 1 cut(s) 393
BclI TGATCA 1 cut(s) 46
BcoDI GTCTC 3 cut(s) 104, 405, 485
BfaI CTAG 3 cut(s) 129, 264, 546
BfuI GTATCC 1 cut(s) 393
BisI GCNGC 1 cut(s) 444
BlsI GCNGC 1 cut(s) 445
Bme1390I CCNGG 2 cut(s) 174, 697
BmeT110I CYCGRG 1 cut(s) 77
BmrFI CCNGG 2 cut(s) 174, 697
BmsI GCATC 5 cut(s) 226, 359, 492, 560, 589
Bsa29I ATCGAT 1 cut(s) 592
BsaAI YACGTR 1 cut(s) 35
BsaI GGTCTC 3 cut(s) 104, 405, 485
BsaJI CCNNGG 1 cut(s) 420
BsaXI ACNNNNNCTCC 2 cut(s) 511, 541
Bsc4I CCNNNNNNNGG 3 cut(s) 159, 421, 536
BseBI CCWGG 2 cut(s) 174, 697
BseCI ATCGAT 1 cut(s) 592
BseDI CCNNGG 1 cut(s) 420
BseGI GGATG 5 cut(s) 64, 72, 283, 340, 487
BseLI CCNNNNNNNGG 3 cut(s) 159, 421, 536
BseRI GAGGAG 1 cut(s) 95
BseXI GCAGC 1 cut(s) 455
BshFI GGCC 1 cut(s) 26
BshVI ATCGAT 1 cut(s) 592
BsiHKCI CYCGRG 1 cut(s) 77
BslI CCNNNNNNNGG 3 cut(s) 159, 421, 536
BsmAI GTCTC 3 cut(s) 104, 405, 485
BsnI GGCC 1 cut(s) 26
Bso31I GGTCTC 3 cut(s) 104, 405, 485
BsoBI CYCGRG 1 cut(s) 77
Bsp143I GATC 3 cut(s) 46, 589, 593
Bsp19I CCATGG 1 cut(s) 420
BspANI GGCC 1 cut(s) 26
BspDI ATCGAT 1 cut(s) 592
BspHI TCATGA 1 cut(s) 49
BspTNI GGTCTC 3 cut(s) 104, 405, 485
BssECI CCNNGG 1 cut(s) 420
BssMI GATC 3 cut(s) 46, 589, 593
BssT1I CCWWGG 1 cut(s) 420
Bst2UI CCWGG 2 cut(s) 174, 697
Bst4CI ACNGT 1 cut(s) 119
Bst6I CTCTTC 1 cut(s) 563
BstBAI YACGTR 1 cut(s) 35
BstDEI CTNAG 1 cut(s) 708
BstDSI CCRYGG 1 cut(s) 420
BstEII GGTNACC 1 cut(s) 699
BstF5I GGATG 5 cut(s) 64, 72, 283, 340, 487
BstKTI GATC 3 cut(s) 49, 592, 596
BstMAI GTCTC 3 cut(s) 104, 405, 485
BstMBI GATC 3 cut(s) 46, 589, 593
BstMWI GCNNNNNNNGC 1 cut(s) 440
BstNI CCWGG 2 cut(s) 174, 697
BstPI GGTNACC 1 cut(s) 699
BstSCI CCNGG 2 cut(s) 172, 695
BstV1I GCAGC 1 cut(s) 455
Bsu15I ATCGAT 1 cut(s) 592
BsuI GTATCC 1 cut(s) 393
BsuRI GGCC 1 cut(s) 26
BsuTUI ATCGAT 1 cut(s) 592
BtgI CCRYGG 1 cut(s) 420
BtgZI GCGATG 1 cut(s) 501
BtsCI GGATG 5 cut(s) 64, 72, 283, 340, 487
CaiI CAGNNNCTG 1 cut(s) 647
CciI TCATGA 1 cut(s) 49
ClaI ATCGAT 1 cut(s) 592
Csp6I GTAC 5 cut(s) 62, 132, 317, 396, 540
CviAII CATG 4 cut(s) 50, 250, 421, 463
CviQI GTAC 5 cut(s) 62, 132, 317, 396, 540
DdeI CTNAG 1 cut(s) 708
DpnI GATC 3 cut(s) 48, 591, 595
DpnII GATC 3 cut(s) 46, 589, 593
EaeI YGGCCR 1 cut(s) 24
Eam1104I CTCTTC 1 cut(s) 563
EarI CTCTTC 1 cut(s) 563
Eco130I CCWWGG 1 cut(s) 420
Eco31I GGTCTC 3 cut(s) 104, 405, 485
Eco57I CTGAAG 1 cut(s) 305
Eco88I CYCGRG 1 cut(s) 77
Eco91I GGTNACC 1 cut(s) 699
EcoO65I GGTNACC 1 cut(s) 699
EcoRII CCWGG 2 cut(s) 172, 695
EcoT14I CCWWGG 1 cut(s) 420
EcoT22I ATGCAT 1 cut(s) 352
ErhI CCWWGG 1 cut(s) 420
FaeI CATG 4 cut(s) 53, 253, 424, 466
FalI AAGNNNNNCTT 2 cut(s) 661, 693
FatI CATG 4 cut(s) 49, 249, 420, 462
FauNDI CATATG 1 cut(s) 244
FbaI TGATCA 1 cut(s) 46
Fnu4HI GCNGC 1 cut(s) 444
FokI GGATG 5 cut(s) 59, 71, 290, 327, 494
Fsp4HI GCNGC 1 cut(s) 444
FspBI CTAG 3 cut(s) 129, 264, 546
GluI GCNGC 1 cut(s) 444
HaeIII GGCC 1 cut(s) 26
Hin1II CATG 4 cut(s) 53, 253, 424, 466
HinfI GANTC 3 cut(s) 169, 188, 437
HphI GGTGA 3 cut(s) 343, 507, 677
Hpy166II GTNNAC 1 cut(s) 396
Hpy188I TCNGA 2 cut(s) 222, 598
Hpy188III TCNNGA 3 cut(s) 50, 264, 499
Hpy8I GTNNAC 1 cut(s) 396
HpyAV CCTTC 3 cut(s) 505, 540, 620
HpyCH4III ACNGT 1 cut(s) 119
HpyCH4IV ACGT 1 cut(s) 34
HpyCH4V TGCA 4 cut(s) 242, 350, 551, 602
HpyF10VI GCNNNNNNNGC 1 cut(s) 440
HpyF3I CTNAG 1 cut(s) 708
HpySE526I ACGT 1 cut(s) 34
Hsp92II CATG 4 cut(s) 53, 253, 424, 466
Ksp22I TGATCA 1 cut(s) 46
Kzo9I GATC 3 cut(s) 46, 589, 593
LpnPI CCDG 3 cut(s) 159, 186, 682
Lsp1109I GCAGC 1 cut(s) 455
LweI GCATC 5 cut(s) 226, 359, 492, 560, 589
MaeI CTAG 3 cut(s) 129, 264, 546
MaeII ACGT 1 cut(s) 34
MaeIII GTNAC 3 cut(s) 308, 643, 699
MalI GATC 3 cut(s) 48, 591, 595
MboI GATC 3 cut(s) 46, 589, 593
MboII GAAGA 2 cut(s) 346, 580
MlsI TGGCCA 1 cut(s) 26
MluCI AATT 2 cut(s) 37, 658
MluNI TGGCCA 1 cut(s) 26
MlyI GAGTC 1 cut(s) 197
MmeI TCCRAC 1 cut(s) 533
MnlI CCTC 9 cut(s) 40, 49, 73, 86, 153, 247, 271, 516, 564
Mox20I TGGCCA 1 cut(s) 26
Mph1103I ATGCAT 1 cut(s) 352
MscI TGGCCA 1 cut(s) 26
MseI TTAA 2 cut(s) 123, 180
MslI CAYNNNNRTG 3 cut(s) 155, 345, 391
Msp20I TGGCCA 1 cut(s) 26
MspA1I CMGCKG 1 cut(s) 325
MspR9I CCNGG 2 cut(s) 174, 697
MvaI CCWGG 2 cut(s) 174, 697
MwoI GCNNNNNNNGC 1 cut(s) 440
NcoI CCATGG 1 cut(s) 420
NdeI CATATG 1 cut(s) 244
NdeII GATC 3 cut(s) 46, 589, 593
NlaIII CATG 4 cut(s) 53, 253, 424, 466
NmuCI GTSAC 1 cut(s) 308
NsiI ATGCAT 1 cut(s) 352
OliI CACNNNNGTG 1 cut(s) 391
PaeR7I CTCGAG 1 cut(s) 77
PagI TCATGA 1 cut(s) 49
PfeI GAWTC 2 cut(s) 169, 437
PflMI CCANNNNNTGG 1 cut(s) 421
PkrI GCNGC 1 cut(s) 445
PleI GAGTC 1 cut(s) 196
PpsI GAGTC 1 cut(s) 196
Ppu21I YACGTR 1 cut(s) 35
PshBI ATTAAT 1 cut(s) 180
Psp6I CCWGG 2 cut(s) 172, 695
PspEI GGTNACC 1 cut(s) 699
PspGI CCWGG 2 cut(s) 172, 695
PspXI VCTCGAGB 1 cut(s) 77
PstNI CAGNNNCTG 1 cut(s) 647
PvuII CAGCTG 1 cut(s) 325
RsaI GTAC 5 cut(s) 63, 133, 318, 397, 541
RsaNI GTAC 5 cut(s) 62, 132, 317, 396, 540
RseI CAYNNNNRTG 3 cut(s) 155, 345, 391
SaqAI TTAA 2 cut(s) 123, 180
SatI GCNGC 1 cut(s) 444
Sau3AI GATC 3 cut(s) 46, 589, 593
SchI GAGTC 1 cut(s) 197
ScrFI CCNGG 2 cut(s) 174, 697
SfaNI GCATC 5 cut(s) 226, 359, 492, 560, 589
Sfr274I CTCGAG 1 cut(s) 77
SlaI CTCGAG 1 cut(s) 77
SmiMI CAYNNNNRTG 3 cut(s) 155, 345, 391
SmlI CTYRAG 1 cut(s) 77
SmoI CTYRAG 1 cut(s) 77
Sse9I AATT 2 cut(s) 37, 658
SspI AATATT 1 cut(s) 607
SspMI CTAG 3 cut(s) 129, 264, 546
StyD4I CCNGG 2 cut(s) 172, 695
StyI CCWWGG 1 cut(s) 420
TaaI ACNGT 1 cut(s) 119
TaiI ACGT 1 cut(s) 37
TaqI TCGA 4 cut(s) 78, 456, 498, 592
TaqII GACCGA 1 cut(s) 128
TasI AATT 2 cut(s) 37, 658
TatI WGTACW 3 cut(s) 61, 131, 316
TfiI GAWTC 2 cut(s) 169, 437
Tru1I TTAA 2 cut(s) 123, 180
Tru9I TTAA 2 cut(s) 123, 180
TseFI GTSAC 1 cut(s) 308
TseI GCWGC 1 cut(s) 443
Tsp45I GTSAC 1 cut(s) 308
TspDTI ATGAA 2 cut(s) 269, 668
TspGWI ACGGA 1 cut(s) 611
Van91I CCANNNNNTGG 1 cut(s) 421
VspI ATTAAT 1 cut(s) 180
XbaI TCTAGA 1 cut(s) 263
XcmI CCANNNNNNNNNTGG 1 cut(s) 427
XhoI CTCGAG 1 cut(s) 77
XspI CTAG 3 cut(s) 129, 264, 546
Zsp2I ATGCAT 1 cut(s) 352
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.