pycom15g24950

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0000261
Physical Location & Seq
Forward (+)
19231991 .. 19233052
1062 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g24950.3

Sequence Viewer

Length: 636 bp
ATGATCACCGCATGTAGTTTACTTCATAATTTTATCAGACTGTATATGGCAGTTGATCCTGAGGAAAATGCAAGGCTTGCATTTGATGAATTACCTATAGGGCAAGATTTACCAGAAGTATTAGCCTACATTGAAACCGTTGAGTCAAGCCAGATATGGACTCAATGGAGGGATGATCTTGCAAGAGAAATTTATGATGAGTGGAGAGGAAGGAGGGCTATGGCTTCTTTGATAGATTATATGGCCACCTCATGTAATTGGATTGATCATGAAGAGGATGTACTACTTACCATCCTCGAGGAGATGGTTGCTGATGGTGTTAGGTGTGAGATCGGCAGTTTTAAGGCTGGTACTTTTGTAACGGTTGTCTCCAAGATGAGGGAACAGATTCCTGGCATTAATATAAAGCCGAAACATATACAAAACAAATTGAAGCGTCTGAAAGAAAAGTATTCGTCTGCATATGACATGATGAATACATCTGGATTTGGTTGGGATGATGAGAAAAAATGTGTTATTGTGGATAGTGACGAAATACTACAGGAGTGGGTGAAGAAACATCCTAATGCATCTTGCAAACCAAATAAGCCATTCCCGTTGTATCCACGGTTATGTACGGTGTTTGGGAGAGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4

Protein Analysis

212

Amino Acids

24.43

Weight (kDa)

5.13

Isoelectric Point (pI)

53.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000261)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18411 FvH4_1g22560 FvH4_1g24290 FvH4_1g24290 FvH4_1g24290 FvH4_1g29434 FvH4_2g04031 FvH4_2g04811 FvH4_2g07610 FvH4_2g09412 FvH4_3g15552 FvH4_3g30720 FvH4_4g05810 FvH4_4g09541 FvH4_4g15171 FvH4_6g09145 FvH4_6g49541 FvH4_7g00320 FvH4_7g11552
malus_domestica MD00G1072400.v1.1 MD01G1188100.v1.1 MD07G1132000.v1.1 MD08G1190700.v1.1 MD10G1011200.v1.1 MD14G1164100.v1.1 MD15G1289200.v1.1 MD15G1289300.v1.1 MD17G1245100.v1.1
prunus_persica Prupe.6G228600_v2.0.a1
pyrus_communis pycom01g07070 pycom02g06890 pycom02g06900 pycom02g13930 pycom04g07470 pycom04g11770 pycom04g21930 pycom05g08520 pycom06g04490 pycom06g09560 pycom07g03750 pycom08g08760 pycom08g13660 pycom09g11520 pycom09g14250 pycom09g14770 pycom10g00720 pycom10g01290 pycom10g10480 pycom10g15700 pycom12420g00130 pycom12g05380 pycom12g08750 pycom13g19010 pycom13g29080 pycom14g06210 pycom14g13680 pycom14g19850 pycom15g22070 pycom15g23440 pycom15g24950 pycom15g25280 pycom16g11100 pycom16g17080 pycom16g26310 pycom17g15650 pycom17g15670 pycom17g20370
rosa_chinensis RchiOBHm_Chr1g0373591 RchiOBHm_Chr2g0105551 RchiOBHm_Chr2g0106711 RchiOBHm_Chr2g0106721 RchiOBHm_Chr7g0219611
rosa_laevigata RLG00000013773 RLG00000017436 RLG00000017533
rosa_multiflora Rmu_co8001842.1_g000001 Rmu_co8158450.1_g000001 Rmu_sc0000516.1_g000067 Rmu_sc0000566.1_g000009 Rmu_sc0000965.1_g000025 Rmu_sc0001718.1_g000001 Rmu_sc0001719.1_g000020 Rmu_sc0001822.1_g000025 Rmu_sc0002219.1_g000003 Rmu_sc0002460.1_g000059 Rmu_sc0002757.1_g000001 Rmu_sc0002860.1_g000001 Rmu_sc0004531.1_g000001 Rmu_sc0005558.1_g000003 Rmu_sc0011218.1_g000001 Rmu_sc0011998.1_g000003 Rmu_sc0015560.1_g000002 Rmu_sc0015560.1_g000003
rosa_roxburghii Rroxscaffold_1G00004200 Rroxscaffold_1G00026570 Rroxscaffold_1G00040370 Rroxscaffold_1G00044120 Rroxscaffold_1G00049590 Rroxscaffold_1G00059030 Rroxscaffold_2G00108440 Rroxscaffold_2G00108850 Rroxscaffold_2G00130680 Rroxscaffold_2G00132980 Rroxscaffold_2G00136860 Rroxscaffold_3G00218610 Rroxscaffold_4G00309940 Rroxscaffold_6G00405560
rosa_rugosa Rorug02G0138000 Rorug02G0138100 Rorug02G0138100 Rorug06G0154000
rosa_samantha Rh1AG121500 Rh1CG116300 Rh2AG189000 Rh2AG509600 Rh2BG200200 Rh2CG194100 Rh2DG195300 Rh5AG114400 Rh5DG488800
rosa_wichuraiana Rw0G022020 Rw1G023650 Rw1G026380 Rw1G034750 Rw1G040770 Rw2G014870 Rw2G016560 Rw4G031190 Rw5G026570 Rw6G003020 Rw6G012060 Rw7G014300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 296
AciI CCGC 1 cut(s) 9
AclWI GGATC 1 cut(s) 50
AcoI YGGCCR 1 cut(s) 243
AcsI RAATTY 1 cut(s) 189
AfaI GTAC 3 cut(s) 282, 352, 616
AfiI CCNNNNNNNGG 1 cut(s) 378
AgsI TTSAA 2 cut(s) 134, 433
AjnI CCWGG 1 cut(s) 391
Alw26I GTCTC 2 cut(s) 373, 624
AlwI GGATC 1 cut(s) 50
Ama87I CYCGRG 1 cut(s) 296
AoxI GGCC 1 cut(s) 243
ApoI RAATTY 1 cut(s) 189
AseI ATTAAT 1 cut(s) 399
Asp700I GAANNNNTTC 1 cut(s) 387
AsuHPI GGTGA 1 cut(s) 562
AvaI CYCGRG 1 cut(s) 296
AxyI CCTNAGG 1 cut(s) 60
BaeI ACNNNNGTAYC 2 cut(s) 342, 375
BalI TGGCCA 1 cut(s) 245
BarI GAAGNNNNNNTAC 2 cut(s) 264, 296
BccI CCATC 3 cut(s) 298, 299, 308
BciT130I CCWGG 1 cut(s) 393
BciVI GTATCC 1 cut(s) 612
BclI TGATCA 2 cut(s) 3, 265
BcoDI GTCTC 2 cut(s) 373, 624
BfmI CTRYAG 2 cut(s) 96, 539
BfuI GTATCC 1 cut(s) 612
Bme1390I CCNGG 1 cut(s) 393
BmeT110I CYCGRG 1 cut(s) 296
BmrFI CCNGG 1 cut(s) 393
BmsI GCATC 1 cut(s) 578
BsaJI CCNNGG 1 cut(s) 605
Bsc4I CCNNNNNNNGG 1 cut(s) 378
Bse21I CCTNAGG 1 cut(s) 60
BseBI CCWGG 1 cut(s) 393
BseDI CCNNGG 1 cut(s) 605
BseGI GGATG 5 cut(s) 178, 283, 291, 502, 559
BseLI CCNNNNNNNGG 1 cut(s) 378
BseMII CTCAG 1 cut(s) 51
BseRI GAGGAG 1 cut(s) 314
BshFI GGCC 1 cut(s) 245
BsiHKCI CYCGRG 1 cut(s) 296
BslI CCNNNNNNNGG 1 cut(s) 378
BsmAI GTCTC 2 cut(s) 373, 624
BsnI GGCC 1 cut(s) 245
BsoBI CYCGRG 1 cut(s) 296
Bsp143I GATC 5 cut(s) 3, 55, 175, 265, 330
BspACI CCGC 1 cut(s) 9
BspANI GGCC 1 cut(s) 245
BspCNI CTCAG 1 cut(s) 52
BspHI TCATGA 1 cut(s) 268
BspPI GGATC 1 cut(s) 50
BssECI CCNNGG 1 cut(s) 605
BssMI GATC 5 cut(s) 3, 55, 175, 265, 330
Bst2UI CCWGG 1 cut(s) 393
Bst4CI ACNGT 5 cut(s) 42, 139, 364, 609, 619
Bst6I CTCTTC 1 cut(s) 267
BstAPI GCANNNNNTGC 1 cut(s) 77
BstC8I GCNNGC 1 cut(s) 78
BstDEI CTNAG 1 cut(s) 60
BstDSI CCRYGG 1 cut(s) 605
BstF5I GGATG 5 cut(s) 178, 283, 291, 502, 559
BstKTI GATC 5 cut(s) 6, 58, 178, 268, 333
BstMAI GTCTC 2 cut(s) 373, 624
BstMBI GATC 5 cut(s) 3, 55, 175, 265, 330
BstMWI GCNNNNNNNGC 1 cut(s) 77
BstNI CCWGG 1 cut(s) 393
BstNSI RCATGY 1 cut(s) 15
BstSCI CCNGG 1 cut(s) 391
BstSFI CTRYAG 2 cut(s) 96, 539
Bsu36I CCTNAGG 1 cut(s) 60
BsuI GTATCC 1 cut(s) 612
BsuRI GGCC 1 cut(s) 245
BtgI CCRYGG 1 cut(s) 605
BtsCI GGATG 5 cut(s) 178, 283, 291, 502, 559
Cac8I GCNNGC 1 cut(s) 78
CciI TCATGA 1 cut(s) 268
CseI GACGC 1 cut(s) 425
Csp6I GTAC 3 cut(s) 281, 351, 615
CviAII CATG 4 cut(s) 12, 252, 269, 469
CviJI RGCY 9 cut(s) 76, 125, 150, 218, 224, 245, 347, 409, 589
CviKI_1 RGCY 9 cut(s) 76, 125, 150, 218, 224, 245, 347, 409, 589
CviQI GTAC 3 cut(s) 281, 351, 615
DdeI CTNAG 1 cut(s) 60
DpnI GATC 5 cut(s) 5, 57, 177, 267, 332
DpnII GATC 5 cut(s) 3, 55, 175, 265, 330
EaeI YGGCCR 1 cut(s) 243
Eam1104I CTCTTC 1 cut(s) 267
EarI CTCTTC 1 cut(s) 267
Eco81I CCTNAGG 1 cut(s) 60
Eco88I CYCGRG 1 cut(s) 296
EcoRII CCWGG 1 cut(s) 391
EcoT22I ATGCAT 1 cut(s) 571
FaeI CATG 4 cut(s) 15, 255, 272, 472
FatI CATG 4 cut(s) 11, 251, 268, 468
FauNDI CATATG 1 cut(s) 463
FbaI TGATCA 2 cut(s) 3, 265
FokI GGATG 5 cut(s) 185, 278, 290, 509, 546
HaeIII GGCC 1 cut(s) 245
HgaI GACGC 1 cut(s) 425
Hin1II CATG 4 cut(s) 15, 255, 272, 472
HinfI GANTC 3 cut(s) 143, 160, 388
HphI GGTGA 1 cut(s) 562
Hpy166II GTNNAC 1 cut(s) 20
Hpy188I TCNGA 2 cut(s) 38, 441
Hpy188III TCNNGA 3 cut(s) 59, 269, 483
Hpy8I GTNNAC 1 cut(s) 20
HpyAV CCTTC 1 cut(s) 204
HpyCH4III ACNGT 5 cut(s) 42, 139, 364, 609, 619
HpyCH4V TGCA 6 cut(s) 71, 80, 182, 461, 569, 576
HpyF10VI GCNNNNNNNGC 1 cut(s) 77
HpyF3I CTNAG 1 cut(s) 60
Hsp92II CATG 4 cut(s) 15, 255, 272, 472
Ksp22I TGATCA 2 cut(s) 3, 265
Kzo9I GATC 5 cut(s) 3, 55, 175, 265, 330
LpnPI CCDG 8 cut(s) 72, 126, 164, 333, 378, 405, 468, 527
LweI GCATC 1 cut(s) 578
MaeIII GTNAC 2 cut(s) 358, 527
MalI GATC 5 cut(s) 5, 57, 177, 267, 332
MboI GATC 5 cut(s) 3, 55, 175, 265, 330
MboII GAAGA 2 cut(s) 284, 565
MlsI TGGCCA 1 cut(s) 245
MluCI AATT 5 cut(s) 28, 89, 189, 256, 428
MluNI TGGCCA 1 cut(s) 245
MlyI GAGTC 2 cut(s) 152, 154
MnlI CCTC 9 cut(s) 55, 162, 200, 207, 259, 268, 292, 305, 372
Mox20I TGGCCA 1 cut(s) 245
Mph1103I ATGCAT 1 cut(s) 571
MroXI GAANNNNTTC 1 cut(s) 387
MscI TGGCCA 1 cut(s) 245
MseI TTAA 2 cut(s) 342, 399
MslI CAYNNNNRTG 2 cut(s) 564, 610
Msp20I TGGCCA 1 cut(s) 245
MspR9I CCNGG 1 cut(s) 393
MvaI CCWGG 1 cut(s) 393
MwoI GCNNNNNNNGC 1 cut(s) 77
NdeI CATATG 1 cut(s) 463
NdeII GATC 5 cut(s) 3, 55, 175, 265, 330
NlaIII CATG 4 cut(s) 15, 255, 272, 472
NmuCI GTSAC 1 cut(s) 527
NsiI ATGCAT 1 cut(s) 571
NspI RCATGY 1 cut(s) 15
PaeR7I CTCGAG 1 cut(s) 296
PagI TCATGA 1 cut(s) 268
PdmI GAANNNNTTC 1 cut(s) 387
PfeI GAWTC 1 cut(s) 388
PleI GAGTC 2 cut(s) 151, 154
PpsI GAGTC 2 cut(s) 151, 154
PshBI ATTAAT 1 cut(s) 399
Psp6I CCWGG 1 cut(s) 391
PspGI CCWGG 1 cut(s) 391
PspXI VCTCGAGB 1 cut(s) 296
RsaI GTAC 3 cut(s) 282, 352, 616
RsaNI GTAC 3 cut(s) 281, 351, 615
RseI CAYNNNNRTG 2 cut(s) 564, 610
SaqAI TTAA 2 cut(s) 342, 399
Sau3AI GATC 5 cut(s) 3, 55, 175, 265, 330
SchI GAGTC 2 cut(s) 152, 154
ScrFI CCNGG 1 cut(s) 393
SetI ASST 3 cut(s) 97, 251, 326
SfaNI GCATC 1 cut(s) 578
SfcI CTRYAG 2 cut(s) 96, 539
Sfr274I CTCGAG 1 cut(s) 296
SlaI CTCGAG 1 cut(s) 296
SmiMI CAYNNNNRTG 2 cut(s) 564, 610
SmlI CTYRAG 1 cut(s) 296
SmoI CTYRAG 1 cut(s) 296
Sse9I AATT 5 cut(s) 28, 89, 189, 256, 428
SsiI CCGC 1 cut(s) 9
StyD4I CCNGG 1 cut(s) 391
TaaI ACNGT 5 cut(s) 42, 139, 364, 609, 619
TaqI TCGA 1 cut(s) 297
TasI AATT 5 cut(s) 28, 89, 189, 256, 428
TatI WGTACW 1 cut(s) 280
TfiI GAWTC 1 cut(s) 388
Tru1I TTAA 2 cut(s) 342, 399
Tru9I TTAA 2 cut(s) 342, 399
TseFI GTSAC 1 cut(s) 527
Tsp45I GTSAC 1 cut(s) 527
TspDTI ATGAA 4 cut(s) 14, 102, 285, 488
VspI ATTAAT 1 cut(s) 399
XapI RAATTY 1 cut(s) 189
XceI RCATGY 1 cut(s) 15
XhoI CTCGAG 1 cut(s) 296
XmnI GAANNNNTTC 1 cut(s) 387
Zsp2I ATGCAT 1 cut(s) 571
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.