MD17G1245100.v1.1
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0000261
Physical Location & Seq
Reverse (-)
29351027 .. 29355914
4888 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1245100.v1.1.491

Sequence Viewer

Length: 453 bp
ATGTTATTTTTTGGGAAAGACCGAGCAACTGGAGTAGGAGCAGCAACTCCTACTGAGATGATGAATGAGCCAGAGCACATTAATGAAGATGAAGATGAAGATGAGGTGGAGACTAGTTCTCCTTCTGTTGCTCGACGGTCAAGCAGTTCAAGTACCCGGAAAAGGAAGAGAGCTGCTAATGATAATGATCTTGCTGTGGCATTTAAAGAAATGCTTTCTGAATCAGTGGATAAGTTGGGTGAAGTTTTACAAGCTGCTTTTGGGAAAGGAGTGGATCCAAAACCTGAGATTGCTTCAGAATTGTCAAAGATGGATTTGTCTATTGAGGATCAAATCAAGGCACTCAATATTCTTTTCGAAAAGCCACAGAATGAGAGGACATTCTTGTCTTTGGATGGTGCAATGAAAAAAGCTTTCGTACTCATGTTACTTGGACAAAGTAACCACAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

151

Amino Acids

16.52

Weight (kDa)

4.85

Isoelectric Point (pI)

56.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000261)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18411 FvH4_1g22560 FvH4_1g24290 FvH4_1g24290 FvH4_1g24290 FvH4_1g29434 FvH4_2g04031 FvH4_2g04811 FvH4_2g07610 FvH4_2g09412 FvH4_3g15552 FvH4_3g30720 FvH4_4g05810 FvH4_4g09541 FvH4_4g15171 FvH4_6g09145 FvH4_6g49541 FvH4_7g00320 FvH4_7g11552
malus_domestica MD00G1072400.v1.1 MD01G1188100.v1.1 MD07G1132000.v1.1 MD08G1190700.v1.1 MD10G1011200.v1.1 MD14G1164100.v1.1 MD15G1289200.v1.1 MD15G1289300.v1.1 MD17G1245100.v1.1
prunus_persica Prupe.6G228600_v2.0.a1
pyrus_communis pycom01g07070 pycom02g06890 pycom02g06900 pycom02g13930 pycom04g07470 pycom04g11770 pycom04g21930 pycom05g08520 pycom06g04490 pycom06g09560 pycom07g03750 pycom08g08760 pycom08g13660 pycom09g11520 pycom09g14250 pycom09g14770 pycom10g00720 pycom10g01290 pycom10g10480 pycom10g15700 pycom12420g00130 pycom12g05380 pycom12g08750 pycom13g19010 pycom13g29080 pycom14g06210 pycom14g13680 pycom14g19850 pycom15g22070 pycom15g23440 pycom15g24950 pycom15g25280 pycom16g11100 pycom16g17080 pycom16g26310 pycom17g15650 pycom17g15670 pycom17g20370
rosa_chinensis RchiOBHm_Chr1g0373591 RchiOBHm_Chr2g0105551 RchiOBHm_Chr2g0106711 RchiOBHm_Chr2g0106721 RchiOBHm_Chr7g0219611
rosa_laevigata RLG00000013773 RLG00000017436 RLG00000017533
rosa_multiflora Rmu_co8001842.1_g000001 Rmu_co8158450.1_g000001 Rmu_sc0000516.1_g000067 Rmu_sc0000566.1_g000009 Rmu_sc0000965.1_g000025 Rmu_sc0001718.1_g000001 Rmu_sc0001719.1_g000020 Rmu_sc0001822.1_g000025 Rmu_sc0002219.1_g000003 Rmu_sc0002460.1_g000059 Rmu_sc0002757.1_g000001 Rmu_sc0002860.1_g000001 Rmu_sc0004531.1_g000001 Rmu_sc0005558.1_g000003 Rmu_sc0011218.1_g000001 Rmu_sc0011998.1_g000003 Rmu_sc0015560.1_g000002 Rmu_sc0015560.1_g000003
rosa_roxburghii Rroxscaffold_1G00004200 Rroxscaffold_1G00026570 Rroxscaffold_1G00040370 Rroxscaffold_1G00044120 Rroxscaffold_1G00049590 Rroxscaffold_1G00059030 Rroxscaffold_2G00108440 Rroxscaffold_2G00108850 Rroxscaffold_2G00130680 Rroxscaffold_2G00132980 Rroxscaffold_2G00136860 Rroxscaffold_3G00218610 Rroxscaffold_4G00309940 Rroxscaffold_6G00405560
rosa_rugosa Rorug02G0138000 Rorug02G0138100 Rorug02G0138100 Rorug06G0154000
rosa_samantha Rh1AG121500 Rh1CG116300 Rh2AG189000 Rh2AG509600 Rh2BG200200 Rh2CG194100 Rh2DG195300 Rh5AG114400 Rh5DG488800
rosa_wichuraiana Rw0G022020 Rw1G023650 Rw1G026380 Rw1G034750 Rw1G040770 Rw2G014870 Rw2G016560 Rw4G031190 Rw5G026570 Rw6G003020 Rw6G012060 Rw7G014300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 385
AclWI GGATC 3 cut(s) 269, 282, 336
AcuI CTGAAG 1 cut(s) 279
AfaI GTAC 2 cut(s) 154, 420
AfiI CCNNNNNNNGG 1 cut(s) 162
AgsI TTSAA 1 cut(s) 150
AhlI ACTAGT 1 cut(s) 113
AluBI AGCT 3 cut(s) 173, 254, 413
AluI AGCT 3 cut(s) 173, 254, 413
Alw21I GWGCWC 1 cut(s) 78
Alw26I GTCTC 1 cut(s) 104
AlwI GGATC 3 cut(s) 269, 282, 336
ApeKI GCWGC 3 cut(s) 41, 173, 254
AseI ATTAAT 1 cut(s) 81
AsuC2I CCSGG 1 cut(s) 157
AsuHPI GGTGA 1 cut(s) 251
AsuII TTCGAA 1 cut(s) 357
BamHI GGATCC 1 cut(s) 274
Bbv12I GWGCWC 1 cut(s) 78
BbvI GCAGC 3 cut(s) 53, 160, 241
BccI CCATC 2 cut(s) 304, 389
BcnI CCSGG 1 cut(s) 157
BcoDI GTCTC 1 cut(s) 104
BcuI ACTAGT 1 cut(s) 113
BfaI CTAG 1 cut(s) 114
BisI GCNGC 3 cut(s) 42, 174, 255
BlsI GCNGC 3 cut(s) 43, 175, 256
Bme1390I CCNGG 1 cut(s) 157
BmiI GGNNCC 1 cut(s) 276
BmrFI CCNGG 1 cut(s) 157
BpmI CTGGAG 1 cut(s) 51
Bpu14I TTCGAA 1 cut(s) 357
BpuMI CCSGG 1 cut(s) 157
BsaBI GATNNNNATC 1 cut(s) 186
BsaXI ACNNNNNCTCC 2 cut(s) 103, 133
Bsc4I CCNNNNNNNGG 1 cut(s) 162
Bse1I ACTGG 1 cut(s) 34
Bse3DI GCAATG 1 cut(s) 408
Bse8I GATNNNNATC 1 cut(s) 186
BseGI GGATG 1 cut(s) 400
BseJI GATNNNNATC 1 cut(s) 186
BseLI CCNNNNNNNGG 1 cut(s) 162
BseMI GCAATG 1 cut(s) 408
BseMII CTCAG 2 cut(s) 45, 276
BseNI ACTGG 1 cut(s) 34
BseXI GCAGC 3 cut(s) 53, 160, 241
BsiHKAI GWGCWC 1 cut(s) 78
BsiSI CCGG 1 cut(s) 157
BslI CCNNNNNNNGG 1 cut(s) 162
BsmAI GTCTC 1 cut(s) 104
Bsp119I TTCGAA 1 cut(s) 357
Bsp1286I GDGCHC 1 cut(s) 78
Bsp143I GATC 3 cut(s) 187, 274, 328
BspCNI CTCAG 2 cut(s) 46, 277
BspLI GGNNCC 1 cut(s) 276
BspPI GGATC 3 cut(s) 269, 282, 336
BspT104I TTCGAA 1 cut(s) 357
BsrDI GCAATG 1 cut(s) 408
BsrI ACTGG 1 cut(s) 34
BssMI GATC 3 cut(s) 187, 274, 328
Bst4CI ACNGT 1 cut(s) 138
Bst6I CTCTTC 1 cut(s) 161
BstBI TTCGAA 1 cut(s) 357
BstDEI CTNAG 2 cut(s) 54, 285
BstF5I GGATG 1 cut(s) 400
BstKTI GATC 3 cut(s) 190, 277, 331
BstMAI GTCTC 1 cut(s) 104
BstMBI GATC 3 cut(s) 187, 274, 328
BstSCI CCNGG 1 cut(s) 155
BstV1I GCAGC 3 cut(s) 53, 160, 241
BstX2I RGATCY 1 cut(s) 274
BstYI RGATCY 1 cut(s) 274
BtsCI GGATG 1 cut(s) 400
BtsIMutI CAGTG 1 cut(s) 231
Csp6I GTAC 2 cut(s) 153, 419
CviAII CATG 1 cut(s) 424
CviJI RGCY 5 cut(s) 70, 173, 254, 364, 413
CviKI_1 RGCY 5 cut(s) 70, 173, 254, 364, 413
CviQI GTAC 2 cut(s) 153, 419
DdeI CTNAG 2 cut(s) 54, 285
DpnI GATC 3 cut(s) 189, 276, 330
DpnII GATC 3 cut(s) 187, 274, 328
DraI TTTAAA 1 cut(s) 205
DrdI GACNNNNNNGTC 1 cut(s) 385
DseDI GACNNNNNNGTC 1 cut(s) 385
Eam1104I CTCTTC 1 cut(s) 161
EarI CTCTTC 1 cut(s) 161
Eco57I CTGAAG 1 cut(s) 279
FaeI CATG 1 cut(s) 427
FaiI YATR 1 cut(s) 425
FalI AAGNNNNNCTT 2 cut(s) 198, 230
FatI CATG 1 cut(s) 423
Fnu4HI GCNGC 3 cut(s) 42, 174, 255
FokI GGATG 1 cut(s) 407
Fsp4HI GCNGC 3 cut(s) 42, 174, 255
FspBI CTAG 1 cut(s) 114
GluI GCNGC 3 cut(s) 42, 174, 255
GsuI CTGGAG 1 cut(s) 51
HapII CCGG 1 cut(s) 157
Hin1II CATG 1 cut(s) 427
HindIII AAGCTT 1 cut(s) 411
HinfI GANTC 1 cut(s) 221
HpaII CCGG 1 cut(s) 157
HphI GGTGA 1 cut(s) 251
Hpy188I TCNGA 2 cut(s) 220, 298
Hpy99I CGWCG 1 cut(s) 138
HpyAV CCTTC 1 cut(s) 132
HpyCH4III ACNGT 1 cut(s) 138
HpyCH4V TGCA 1 cut(s) 401
HpyF3I CTNAG 2 cut(s) 54, 285
Hsp92II CATG 1 cut(s) 427
Kzo9I GATC 3 cut(s) 187, 274, 328
LmnI GCTCC 1 cut(s) 38
LpnPI CCDG 4 cut(s) 15, 84, 170, 297
Lsp1109I GCAGC 3 cut(s) 53, 160, 241
MaeI CTAG 1 cut(s) 114
MaeIII GTNAC 2 cut(s) 426, 440
MalI GATC 3 cut(s) 189, 276, 330
MboI GATC 3 cut(s) 187, 274, 328
MboII GAAGA 4 cut(s) 98, 104, 110, 178
MfeI CAATTG 1 cut(s) 448
MflI RGATCY 1 cut(s) 274
MhlI GDGCHC 1 cut(s) 78
MluCI AATT 2 cut(s) 299, 448
MnlI CCTC 3 cut(s) 97, 319, 369
MseI TTAA 2 cut(s) 81, 204
MslI CAYNNNNRTG 1 cut(s) 81
MspI CCGG 1 cut(s) 157
MspR9I CCNGG 1 cut(s) 157
MunI CAATTG 1 cut(s) 448
NciI CCSGG 1 cut(s) 157
NdeII GATC 3 cut(s) 187, 274, 328
NlaIII CATG 1 cut(s) 427
NlaIV GGNNCC 1 cut(s) 276
NspV TTCGAA 1 cut(s) 357
PfeI GAWTC 1 cut(s) 221
PkrI GCNGC 3 cut(s) 43, 175, 256
PshBI ATTAAT 1 cut(s) 81
PspN4I GGNNCC 1 cut(s) 276
PsuI RGATCY 1 cut(s) 274
RsaI GTAC 2 cut(s) 154, 420
RsaNI GTAC 2 cut(s) 153, 419
RseI CAYNNNNRTG 1 cut(s) 81
SaqAI TTAA 2 cut(s) 81, 204
SatI GCNGC 3 cut(s) 42, 174, 255
Sau3AI GATC 3 cut(s) 187, 274, 328
ScrFI CCNGG 1 cut(s) 157
SduI GDGCHC 1 cut(s) 78
SetI ASST 5 cut(s) 108, 175, 256, 286, 415
SfuI TTCGAA 1 cut(s) 357
SmiMI CAYNNNNRTG 1 cut(s) 81
SpeI ACTAGT 1 cut(s) 113
Sse9I AATT 2 cut(s) 299, 448
SspI AATATT 1 cut(s) 349
SspMI CTAG 1 cut(s) 114
StyD4I CCNGG 1 cut(s) 155
TaaI ACNGT 1 cut(s) 138
TaqI TCGA 2 cut(s) 133, 357
TaqII GACCGA 1 cut(s) 36
TasI AATT 2 cut(s) 299, 448
TfiI GAWTC 1 cut(s) 221
Tru1I TTAA 2 cut(s) 81, 204
Tru9I TTAA 2 cut(s) 81, 204
TscAI CASTG 1 cut(s) 231
TseI GCWGC 3 cut(s) 41, 173, 254
TspDTI ATGAA 5 cut(s) 77, 99, 105, 111, 419
TspRI CASTG 1 cut(s) 231
VspI ATTAAT 1 cut(s) 81
XspI CTAG 1 cut(s) 114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.