Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0000261

Physical Location & Seq

Genomic Coordinates Reverse (-)

40801479 .. 40802585

Gene Structure 1107 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013773

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGGATTATGAAGATAGTCTTATAAGTGATAGAAAAAAGAGAGAAAGACGTGTATGGACAGATGAGCAGGAAGATACTCTTCTAAACATCCTAGAAGAACTAGTTGCAAATGGTTATGCTCGTAAAAATGGCACATTCAAACCTGTAAAGGAAGTTAATGAAGAGCTTGAAAACCAAGAGCATGCTGATGCATTTGATTCTAAGGTAGAAGCAGACCAACTATCCACTGCTAAATCTGAGTCCACTTCTAAATCCGAGTCTACAAGCACGAGTAGGAGGAGGAAAAGAGAGGATGATGATAACATAGTTCGTGGCTTAGACAAGTTTGCTGCAACATTCAAAGAAGTGATGCAGACTTCAAATGAGCAGATCCGCCTTCTTGTTGAATACTTGCAGCCAAAAGGTAGCAAAAAAGATGAGGTACGAGCTAAAAAAGATGAATTGTGGGCTAAGCTCTTAAAGTTAAACCTTTCAACAACAAATCGAATCAAAGCATTGAAAATTCTAATGGCTGATTCTGCTGAGCTTTTCTTGGCTCTAGATAAAGAGGAAGAAAAGATGGAGTTCATCATACAGCTGCTTCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000123 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006325 GO:0006338 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0031248 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0051276 GO:0070013 GO:0071704 GO:0071840 GO:1901564 GO:1902493 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MRG Tudor-knot

Protein Analysis

196

Amino Acids

22.62

Weight (kDa)

5.17

Isoelectric Point (pI)

44.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000261)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g18411 FvH4_1g22560 FvH4_1g24290 FvH4_1g24290 FvH4_1g24290 FvH4_1g29434 FvH4_2g04031 FvH4_2g04811 FvH4_2g07610 FvH4_2g09412 FvH4_3g15552 FvH4_3g30720 FvH4_4g05810 FvH4_4g09541 FvH4_4g15171 FvH4_6g09145 FvH4_6g49541 FvH4_7g00320 FvH4_7g11552
malus_domestica	MD00G1072400.v1.1 MD01G1188100.v1.1 MD07G1132000.v1.1 MD08G1190700.v1.1 MD10G1011200.v1.1 MD14G1164100.v1.1 MD15G1289200.v1.1 MD15G1289300.v1.1 MD17G1245100.v1.1
prunus_persica	Prupe.6G228600_v2.0.a1
pyrus_communis	pycom01g07070 pycom02g06890 pycom02g06900 pycom02g13930 pycom04g07470 pycom04g11770 pycom04g21930 pycom05g08520 pycom06g04490 pycom06g09560 pycom07g03750 pycom08g08760 pycom08g13660 pycom09g11520 pycom09g14250 pycom09g14770 pycom10g00720 pycom10g01290 pycom10g10480 pycom10g15700 pycom12420g00130 pycom12g05380 pycom12g08750 pycom13g19010 pycom13g29080 pycom14g06210 pycom14g13680 pycom14g19850 pycom15g22070 pycom15g23440 pycom15g24950 pycom15g25280 pycom16g11100 pycom16g17080 pycom16g26310 pycom17g15650 pycom17g15670 pycom17g20370
rosa_chinensis	RchiOBHm_Chr1g0373591 RchiOBHm_Chr2g0105551 RchiOBHm_Chr2g0106711 RchiOBHm_Chr2g0106721 RchiOBHm_Chr7g0219611
rosa_laevigata	RLG00000013773 RLG00000017436 RLG00000017533
rosa_multiflora	Rmu_co8001842.1_g000001 Rmu_co8158450.1_g000001 Rmu_sc0000516.1_g000067 Rmu_sc0000566.1_g000009 Rmu_sc0000965.1_g000025 Rmu_sc0001718.1_g000001 Rmu_sc0001719.1_g000020 Rmu_sc0001822.1_g000025 Rmu_sc0002219.1_g000003 Rmu_sc0002460.1_g000059 Rmu_sc0002757.1_g000001 Rmu_sc0002860.1_g000001 Rmu_sc0004531.1_g000001 Rmu_sc0005558.1_g000003 Rmu_sc0011218.1_g000001 Rmu_sc0011998.1_g000003 Rmu_sc0015560.1_g000002 Rmu_sc0015560.1_g000003
rosa_roxburghii	Rroxscaffold_1G00004200 Rroxscaffold_1G00026570 Rroxscaffold_1G00040370 Rroxscaffold_1G00044120 Rroxscaffold_1G00049590 Rroxscaffold_1G00059030 Rroxscaffold_2G00108440 Rroxscaffold_2G00108850 Rroxscaffold_2G00130680 Rroxscaffold_2G00132980 Rroxscaffold_2G00136860 Rroxscaffold_3G00218610 Rroxscaffold_4G00309940 Rroxscaffold_6G00405560
rosa_rugosa	Rorug02G0138000 Rorug02G0138100 Rorug02G0138100 Rorug06G0154000
rosa_samantha	Rh1AG121500 Rh1CG116300 Rh2AG189000 Rh2AG509600 Rh2BG200200 Rh2CG194100 Rh2DG195300 Rh5AG114400 Rh5DG488800
rosa_wichuraiana	Rw0G022020 Rw1G023650 Rw1G026380 Rw1G034750 Rw1G040770 Rw2G014870 Rw2G016560 Rw4G031190 Rw5G026570 Rw6G003020 Rw6G012060 Rw7G014300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	23
AccI	GTMKAC	1 cut(s)	260
AciI	CCGC	1 cut(s)	373
AclWI	GGATC	1 cut(s)	364
AcsI	RAATTY	1 cut(s)	501
AfaI	GTAC	1 cut(s)	423
AflIII	ACRYGT	1 cut(s)	49
AgsI	TTSAA	7 cut(s)	139, 170, 340, 360, 386, 474, 499
AhlI	ACTAGT	1 cut(s)	100
AjiI	CACGTC	1 cut(s)	50
AluBI	AGCT	5 cut(s)	166, 428, 454, 526, 577
AluI	AGCT	5 cut(s)	166, 428, 454, 526, 577
AlwI	GGATC	1 cut(s)	364
ApeKI	GCWGC	3 cut(s)	329, 394, 577
ApoI	RAATTY	1 cut(s)	501
BauI	CACGAG	1 cut(s)	268
BbvI	GCAGC	3 cut(s)	316, 406, 564
BccI	CCATC	1 cut(s)	553
BcuI	ACTAGT	1 cut(s)	100
BfaI	CTAG	3 cut(s)	92, 101, 539
BisI	GCNGC	3 cut(s)	330, 395, 578
BlpI	GCTNAGC	2 cut(s)	450, 522
BlsI	GCNGC	3 cut(s)	331, 396, 579
BmgBI	CACGTC	1 cut(s)	50
BmsI	GCATC	2 cut(s)	178, 339
Bpu1102I	GCTNAGC	2 cut(s)	450, 522
BseGI	GGATG	2 cut(s)	87, 298
BseMII	CTCAG	2 cut(s)	228, 513
BseRI	GAGGAG	1 cut(s)	292
BseXI	GCAGC	3 cut(s)	316, 406, 564
Bsp143I	GATC	1 cut(s)	369
Bsp1720I	GCTNAGC	2 cut(s)	450, 522
BspACI	CCGC	1 cut(s)	373
BspCNI	CTCAG	2 cut(s)	229, 514
BspPI	GGATC	1 cut(s)	364
BspQI	GCTCTTC	1 cut(s)	156
BssMI	GATC	1 cut(s)	369
BssSI	CACGAG	1 cut(s)	268
Bst2BI	CACGAG	1 cut(s)	268
Bst6I	CTCTTC	2 cut(s)	84, 156
BstC8I	GCNNGC	1 cut(s)	183
BstDEI	CTNAG	5 cut(s)	201, 237, 316, 450, 522
BstF5I	GGATG	2 cut(s)	87, 298
BstKTI	GATC	1 cut(s)	372
BstMBI	GATC	1 cut(s)	369
BstMWI	GCNNNNNNNGC	1 cut(s)	518
BstNSI	RCATGY	1 cut(s)	185
BstV1I	GCAGC	3 cut(s)	316, 406, 564
BstX2I	RGATCY	1 cut(s)	369
BstYI	RGATCY	1 cut(s)	369
BtrI	CACGTC	1 cut(s)	50
BtsCI	GGATG	2 cut(s)	87, 298
BtsI	GCAGTG	1 cut(s)	225
BtsIMutI	CAGTG	1 cut(s)	225
Cac8I	GCNNGC	1 cut(s)	183
Csp6I	GTAC	1 cut(s)	422
CviAII	CATG	1 cut(s)	182
CviQI	GTAC	1 cut(s)	422
DdeI	CTNAG	5 cut(s)	201, 237, 316, 450, 522
DpnI	GATC	1 cut(s)	371
DpnII	GATC	1 cut(s)	369
Eam1104I	CTCTTC	2 cut(s)	84, 156
EarI	CTCTTC	2 cut(s)	84, 156
EciI	GGCGGA	1 cut(s)	362
EcoT22I	ATGCAT	1 cut(s)	193
FaeI	CATG	1 cut(s)	185
FaiI	YATR	7 cut(s)	9, 23, 55, 117, 183, 305, 572
FalI	AAGNNNNNCTT	3 cut(s)	35, 63, 95
FatI	CATG	1 cut(s)	181
FblI	GTMKAC	1 cut(s)	260
Fnu4HI	GCNGC	3 cut(s)	330, 395, 578
FokI	GGATG	2 cut(s)	74, 305
Fsp4HI	GCNGC	3 cut(s)	330, 395, 578
FspBI	CTAG	3 cut(s)	92, 101, 539
GluI	GCNGC	3 cut(s)	330, 395, 578
Hin1II	CATG	1 cut(s)	185
HinfI	GANTC	5 cut(s)	197, 239, 257, 486, 515
Hpy166II	GTNNAC	2 cut(s)	243, 261
Hpy188I	TCNGA	2 cut(s)	238, 256
Hpy188III	TCNNGA	1 cut(s)	539
Hpy8I	GTNNAC	2 cut(s)	243, 261
HpyAV	CCTTC	1 cut(s)	386
HpyCH4IV	ACGT	1 cut(s)	49
HpyCH4V	TGCA	5 cut(s)	107, 191, 332, 352, 394
HpyF10VI	GCNNNNNNNGC	1 cut(s)	518
HpyF3I	CTNAG	5 cut(s)	201, 237, 316, 450, 522
HpySE526I	ACGT	1 cut(s)	49
Hsp92II	CATG	1 cut(s)	185
Kzo9I	GATC	1 cut(s)	369
LguI	GCTCTTC	1 cut(s)	156
LpnPI	CCDG	2 cut(s)	53, 156
Lsp1109I	GCAGC	3 cut(s)	316, 406, 564
LweI	GCATC	2 cut(s)	178, 339
MaeI	CTAG	3 cut(s)	92, 101, 539
MaeII	ACGT	1 cut(s)	49
MalI	GATC	1 cut(s)	371
MboI	GATC	1 cut(s)	369
MboII	GAAGA	6 cut(s)	23, 71, 83, 107, 173, 563
MflI	RGATCY	1 cut(s)	369
MluCI	AATT	2 cut(s)	440, 501
MlyI	GAGTC	2 cut(s)	248, 266
MnlI	CCTC	5 cut(s)	270, 273, 283, 412, 541
Mph1103I	ATGCAT	1 cut(s)	193
MseI	TTAA	3 cut(s)	156, 458, 464
MslI	CAYNNNNRTG	1 cut(s)	186
MspA1I	CMGCKG	1 cut(s)	577
MwoI	GCNNNNNNNGC	1 cut(s)	518
NdeII	GATC	1 cut(s)	369
NlaIII	CATG	1 cut(s)	185
NsiI	ATGCAT	1 cut(s)	193
NspI	RCATGY	1 cut(s)	185
PaeI	GCATGC	1 cut(s)	185
PciSI	GCTCTTC	1 cut(s)	156
PfeI	GAWTC	3 cut(s)	197, 486, 515
PkrI	GCNGC	3 cut(s)	331, 396, 579
PleI	GAGTC	2 cut(s)	247, 265
PpsI	GAGTC	2 cut(s)	247, 265
PsiI	TTATAA	1 cut(s)	23
PsuI	RGATCY	1 cut(s)	369
PvuII	CAGCTG	1 cut(s)	577
RsaI	GTAC	1 cut(s)	423
RsaNI	GTAC	1 cut(s)	422
RseI	CAYNNNNRTG	1 cut(s)	186
SapI	GCTCTTC	1 cut(s)	156
SaqAI	TTAA	3 cut(s)	156, 458, 464
SatI	GCNGC	3 cut(s)	330, 395, 578
Sau3AI	GATC	1 cut(s)	369
SchI	GAGTC	2 cut(s)	248, 266
SfaNI	GCATC	2 cut(s)	178, 339
SmiMI	CAYNNNNRTG	1 cut(s)	186
SpeI	ACTAGT	1 cut(s)	100
SphI	GCATGC	1 cut(s)	185
Sse9I	AATT	2 cut(s)	440, 501
SsiI	CCGC	1 cut(s)	373
SspMI	CTAG	3 cut(s)	92, 101, 539
TaiI	ACGT	1 cut(s)	52
TaqI	TCGA	1 cut(s)	484
TasI	AATT	2 cut(s)	440, 501
TfiI	GAWTC	3 cut(s)	197, 486, 515
Tru1I	TTAA	3 cut(s)	156, 458, 464
Tru9I	TTAA	3 cut(s)	156, 458, 464
TscAI	CASTG	1 cut(s)	232
TseI	GCWGC	3 cut(s)	329, 394, 577
TspDTI	ATGAA	4 cut(s)	24, 174, 453, 556
TspRI	CASTG	1 cut(s)	232
XapI	RAATTY	1 cut(s)	501
XbaI	TCTAGA	1 cut(s)	538
XceI	RCATGY	1 cut(s)	185
XmiI	GTMKAC	1 cut(s)	260
XspI	CTAG	3 cut(s)	92, 101, 539
Zsp2I	ATGCAT	1 cut(s)	193

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.