pycom14g13680
MYB Family

Myb/SANT-like DNA-binding domain

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
Physical Location & Seq
Forward (+)
16528585 .. 16529028
444 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom14g13680.1

Sequence Viewer

Length: 444 bp
ATGGATGAAAGAAAGATTGTGGCATGCTTCATTGTTAAGTTGTGGTACTTGAATATTGTGACTTGGTTGATGATGTGGTTCACGATGAATCATAATTTAGCTAGAAGGCGGAATCAGCAACTTGCACTTAGAAATTCAAGTACCAAGAAAAGGAAGAGGTCAGCTGCTAATGATAATGATATTGCTGTGACATTTAAAGAAATACTTTCTGAATCAATTGAGAAGTTGGGTGAAGTTTTACAAGCTGCTTTTGGAAAAGGAGTGGATCCAAAATCTGAAATTGCTTCAGAATTGTCAAAGATGGATTTGTCTATTGAGGATCAAATCAAGGCACTGAATATCCTTTTCGAAAAGCCACAGAATGAGAGGACATTCTTGTCGTTGGATGGTACAATGAAAAAATCATTCGTACTCATGTTACTTGAACAAAGTAACCACAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

148

Amino Acids

17.01

Weight (kDa)

9.27

Isoelectric Point (pI)

62.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000261)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18411 FvH4_1g22560 FvH4_1g24290 FvH4_1g24290 FvH4_1g24290 FvH4_1g29434 FvH4_2g04031 FvH4_2g04811 FvH4_2g07610 FvH4_2g09412 FvH4_3g15552 FvH4_3g30720 FvH4_4g05810 FvH4_4g09541 FvH4_4g15171 FvH4_6g09145 FvH4_6g49541 FvH4_7g00320 FvH4_7g11552
malus_domestica MD00G1072400.v1.1 MD01G1188100.v1.1 MD07G1132000.v1.1 MD08G1190700.v1.1 MD10G1011200.v1.1 MD14G1164100.v1.1 MD15G1289200.v1.1 MD15G1289300.v1.1 MD17G1245100.v1.1
prunus_persica Prupe.6G228600_v2.0.a1
pyrus_communis pycom01g07070 pycom02g06890 pycom02g06900 pycom02g13930 pycom04g07470 pycom04g11770 pycom04g21930 pycom05g08520 pycom06g04490 pycom06g09560 pycom07g03750 pycom08g08760 pycom08g13660 pycom09g11520 pycom09g14250 pycom09g14770 pycom10g00720 pycom10g01290 pycom10g10480 pycom10g15700 pycom12420g00130 pycom12g05380 pycom12g08750 pycom13g19010 pycom13g29080 pycom14g06210 pycom14g13680 pycom14g19850 pycom15g22070 pycom15g23440 pycom15g24950 pycom15g25280 pycom16g11100 pycom16g17080 pycom16g26310 pycom17g15650 pycom17g15670 pycom17g20370
rosa_chinensis RchiOBHm_Chr1g0373591 RchiOBHm_Chr2g0105551 RchiOBHm_Chr2g0106711 RchiOBHm_Chr2g0106721 RchiOBHm_Chr7g0219611
rosa_laevigata RLG00000013773 RLG00000017436 RLG00000017533
rosa_multiflora Rmu_co8001842.1_g000001 Rmu_co8158450.1_g000001 Rmu_sc0000516.1_g000067 Rmu_sc0000566.1_g000009 Rmu_sc0000965.1_g000025 Rmu_sc0001718.1_g000001 Rmu_sc0001719.1_g000020 Rmu_sc0001822.1_g000025 Rmu_sc0002219.1_g000003 Rmu_sc0002460.1_g000059 Rmu_sc0002757.1_g000001 Rmu_sc0002860.1_g000001 Rmu_sc0004531.1_g000001 Rmu_sc0005558.1_g000003 Rmu_sc0011218.1_g000001 Rmu_sc0011998.1_g000003 Rmu_sc0015560.1_g000002 Rmu_sc0015560.1_g000003
rosa_roxburghii Rroxscaffold_1G00004200 Rroxscaffold_1G00026570 Rroxscaffold_1G00040370 Rroxscaffold_1G00044120 Rroxscaffold_1G00049590 Rroxscaffold_1G00059030 Rroxscaffold_2G00108440 Rroxscaffold_2G00108850 Rroxscaffold_2G00130680 Rroxscaffold_2G00132980 Rroxscaffold_2G00136860 Rroxscaffold_3G00218610 Rroxscaffold_4G00309940 Rroxscaffold_6G00405560
rosa_rugosa Rorug02G0138000 Rorug02G0138100 Rorug02G0138100 Rorug06G0154000
rosa_samantha Rh1AG121500 Rh1CG116300 Rh2AG189000 Rh2AG509600 Rh2BG200200 Rh2CG194100 Rh2DG195300 Rh5AG114400 Rh5DG488800
rosa_wichuraiana Rw0G022020 Rw1G023650 Rw1G026380 Rw1G034750 Rw1G040770 Rw2G014870 Rw2G016560 Rw4G031190 Rw5G026570 Rw6G003020 Rw6G012060 Rw7G014300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 376
AciI CCGC 1 cut(s) 109
AclWI GGATC 3 cut(s) 260, 273, 327
AcsI RAATTY 1 cut(s) 133
AcuI CTGAAG 1 cut(s) 270
AfaI GTAC 4 cut(s) 47, 142, 391, 411
AfiI CCNNNNNNNGG 1 cut(s) 150
AgsI TTSAA 3 cut(s) 52, 138, 425
AluBI AGCT 3 cut(s) 101, 164, 245
AluI AGCT 3 cut(s) 101, 164, 245
AlwI GGATC 3 cut(s) 260, 273, 327
ApeKI GCWGC 2 cut(s) 164, 245
ApoI RAATTY 1 cut(s) 133
AsuHPI GGTGA 1 cut(s) 242
AsuII TTCGAA 1 cut(s) 348
BamHI GGATCC 1 cut(s) 265
BbvI GCAGC 2 cut(s) 151, 232
BccI CCATC 2 cut(s) 295, 380
BfaI CTAG 1 cut(s) 102
BisI GCNGC 2 cut(s) 165, 246
BlsI GCNGC 2 cut(s) 166, 247
BmiI GGNNCC 1 cut(s) 267
Bpu14I TTCGAA 1 cut(s) 348
Bsc4I CCNNNNNNNGG 1 cut(s) 150
BseGI GGATG 2 cut(s) 10, 391
BseLI CCNNNNNNNGG 1 cut(s) 150
BseXI GCAGC 2 cut(s) 151, 232
BslI CCNNNNNNNGG 1 cut(s) 150
Bsp119I TTCGAA 1 cut(s) 348
Bsp143I GATC 2 cut(s) 265, 319
BspACI CCGC 1 cut(s) 109
BspLI GGNNCC 1 cut(s) 267
BspPI GGATC 3 cut(s) 260, 273, 327
BspT104I TTCGAA 1 cut(s) 348
BssMI GATC 2 cut(s) 265, 319
Bst6I CTCTTC 1 cut(s) 149
BstBI TTCGAA 1 cut(s) 348
BstC8I GCNNGC 1 cut(s) 25
BstDEI CTNAG 1 cut(s) 128
BstF5I GGATG 2 cut(s) 10, 391
BstKTI GATC 2 cut(s) 268, 322
BstMBI GATC 2 cut(s) 265, 319
BstMWI GCNNNNNNNGC 1 cut(s) 115
BstNSI RCATGY 1 cut(s) 27
BstV1I GCAGC 2 cut(s) 151, 232
BstX2I RGATCY 1 cut(s) 265
BstYI RGATCY 1 cut(s) 265
BtsCI GGATG 2 cut(s) 10, 391
BtsIMutI CAGTG 1 cut(s) 332
Cac8I GCNNGC 1 cut(s) 25
Csp6I GTAC 4 cut(s) 46, 141, 390, 410
CviAII CATG 2 cut(s) 24, 415
CviJI RGCY 4 cut(s) 101, 164, 245, 355
CviKI_1 RGCY 4 cut(s) 101, 164, 245, 355
CviQI GTAC 4 cut(s) 46, 141, 390, 410
DdeI CTNAG 1 cut(s) 128
DpnI GATC 2 cut(s) 267, 321
DpnII GATC 2 cut(s) 265, 319
DraI TTTAAA 1 cut(s) 196
DrdI GACNNNNNNGTC 1 cut(s) 376
DseDI GACNNNNNNGTC 1 cut(s) 376
Eam1104I CTCTTC 1 cut(s) 149
EarI CTCTTC 1 cut(s) 149
EciI GGCGGA 1 cut(s) 124
Eco57I CTGAAG 1 cut(s) 270
FaeI CATG 2 cut(s) 27, 418
FaiI YATR 3 cut(s) 25, 93, 416
FalI AAGNNNNNCTT 2 cut(s) 189, 221
FatI CATG 2 cut(s) 23, 414
Fnu4HI GCNGC 2 cut(s) 165, 246
FokI GGATG 2 cut(s) 17, 398
Fsp4HI GCNGC 2 cut(s) 165, 246
FspBI CTAG 1 cut(s) 102
GluI GCNGC 2 cut(s) 165, 246
Hin1II CATG 2 cut(s) 27, 418
HinfI GANTC 3 cut(s) 88, 112, 212
HphI GGTGA 1 cut(s) 242
Hpy166II GTNNAC 1 cut(s) 81
Hpy188I TCNGA 3 cut(s) 211, 277, 289
Hpy188III TCNNGA 1 cut(s) 82
Hpy8I GTNNAC 1 cut(s) 81
HpyAV CCTTC 1 cut(s) 99
HpyCH4V TGCA 1 cut(s) 125
HpyF10VI GCNNNNNNNGC 1 cut(s) 115
HpyF3I CTNAG 1 cut(s) 128
Hsp92II CATG 2 cut(s) 27, 418
Kzo9I GATC 2 cut(s) 265, 319
Lsp1109I GCAGC 2 cut(s) 151, 232
MaeI CTAG 1 cut(s) 102
MaeIII GTNAC 4 cut(s) 58, 187, 417, 431
MalI GATC 2 cut(s) 267, 321
MboI GATC 2 cut(s) 265, 319
MboII GAAGA 1 cut(s) 166
MfeI CAATTG 2 cut(s) 216, 439
MflI RGATCY 1 cut(s) 265
MluCI AATT 6 cut(s) 94, 133, 216, 279, 290, 439
MmeI TCCRAC 1 cut(s) 363
MnlI CCTC 3 cut(s) 150, 310, 360
MseI TTAA 2 cut(s) 36, 195
MspA1I CMGCKG 1 cut(s) 164
MunI CAATTG 2 cut(s) 216, 439
MwoI GCNNNNNNNGC 1 cut(s) 115
NdeII GATC 2 cut(s) 265, 319
NlaIII CATG 2 cut(s) 27, 418
NlaIV GGNNCC 1 cut(s) 267
NmuCI GTSAC 2 cut(s) 58, 187
NspI RCATGY 1 cut(s) 27
NspV TTCGAA 1 cut(s) 348
PaeI GCATGC 1 cut(s) 27
PfeI GAWTC 3 cut(s) 88, 112, 212
PkrI GCNGC 2 cut(s) 166, 247
PspN4I GGNNCC 1 cut(s) 267
PsuI RGATCY 1 cut(s) 265
PvuII CAGCTG 1 cut(s) 164
RsaI GTAC 4 cut(s) 47, 142, 391, 411
RsaNI GTAC 4 cut(s) 46, 141, 390, 410
SaqAI TTAA 2 cut(s) 36, 195
SatI GCNGC 2 cut(s) 165, 246
Sau3AI GATC 2 cut(s) 265, 319
SetI ASST 4 cut(s) 103, 161, 166, 247
SfuI TTCGAA 1 cut(s) 348
SphI GCATGC 1 cut(s) 27
Sse9I AATT 6 cut(s) 94, 133, 216, 279, 290, 439
SsiI CCGC 1 cut(s) 109
SspI AATATT 1 cut(s) 55
SspMI CTAG 1 cut(s) 102
TaqI TCGA 1 cut(s) 348
TasI AATT 6 cut(s) 94, 133, 216, 279, 290, 439
TfiI GAWTC 3 cut(s) 88, 112, 212
Tru1I TTAA 2 cut(s) 36, 195
Tru9I TTAA 2 cut(s) 36, 195
TscAI CASTG 1 cut(s) 339
TseFI GTSAC 2 cut(s) 58, 187
TseI GCWGC 2 cut(s) 164, 245
Tsp45I GTSAC 2 cut(s) 58, 187
TspDTI ATGAA 4 cut(s) 19, 21, 101, 410
TspRI CASTG 1 cut(s) 339
XapI RAATTY 1 cut(s) 133
XceI RCATGY 1 cut(s) 27
XspI CTAG 1 cut(s) 102
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.