MRG
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Tudor-knot | PF11717 | 19 - 58 | 5.5e-06 | RNA binding activity-knot of a chromodomain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 219, 1664 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 47 |
| AccI | GTMKAC | 1 cut(s) | 14 |
| AciI | CCGC | 6 cut(s) | 119, 791, 824, 1016, 1354, 1516 |
| AclWI | GGATC | 1 cut(s) | 270 |
| AcsI | RAATTY | 4 cut(s) | 489, 530, 782, 1772 |
| AcuI | CTGAAG | 1 cut(s) | 840 |
| AfaI | GTAC | 1 cut(s) | 1500 |
| AflIII | ACRYGT | 1 cut(s) | 555 |
| AgsI | TTSAA | 9 cut(s) | 113, 274, 488, 498, 820, 880, 1176, 1271, 1482 |
| AjiI | CACGTC | 1 cut(s) | 556 |
| AluBI | AGCT | 8 cut(s) | 124, 215, 372, 544, 860, 1136, 1262, 1660 |
| AluI | AGCT | 8 cut(s) | 124, 215, 372, 544, 860, 1136, 1262, 1660 |
| Alw21I | GWGCWC | 2 cut(s) | 835, 1435 |
| Alw26I | GTCTC | 3 cut(s) | 852, 954, 1260 |
| Alw44I | GTGCAC | 1 cut(s) | 831 |
| AlwI | GGATC | 1 cut(s) | 270 |
| AoxI | GGCC | 1 cut(s) | 27 |
| ApaLI | GTGCAC | 1 cut(s) | 831 |
| ApeKI | GCWGC | 1 cut(s) | 1451 |
| ApoI | RAATTY | 4 cut(s) | 489, 530, 782, 1772 |
| AseI | ATTAAT | 1 cut(s) | 735 |
| AspS9I | GGNCC | 2 cut(s) | 70, 1102 |
| AsuHPI | GGTGA | 3 cut(s) | 461, 977, 1322 |
| AsuII | TTCGAA | 1 cut(s) | 713 |
| AvaII | GGWCC | 2 cut(s) | 70, 1102 |
| BaeGI | GKGCMC | 1 cut(s) | 835 |
| BauI | CACGAG | 1 cut(s) | 1131 |
| BbsI | GAAGAC | 4 cut(s) | 43, 926, 1335, 1417 |
| Bbv12I | GWGCWC | 2 cut(s) | 835, 1435 |
| BbvCI | CCTCAGC | 1 cut(s) | 125 |
| BbvI | GCAGC | 1 cut(s) | 1438 |
| BccI | CCATC | 1 cut(s) | 761 |
| BceAI | ACGGC | 1 cut(s) | 52 |
| BcoDI | GTCTC | 3 cut(s) | 852, 954, 1260 |
| BfmI | CTRYAG | 1 cut(s) | 1619 |
| BglII | AGATCT | 2 cut(s) | 591, 696 |
| BisI | GCNGC | 1 cut(s) | 1452 |
| BlsI | GCNGC | 1 cut(s) | 1453 |
| BmcAI | AGTACT | 1 cut(s) | 1500 |
| Bme18I | GGWCC | 2 cut(s) | 70, 1102 |
| BmgBI | CACGTC | 1 cut(s) | 556 |
| BmgT120I | GGNCC | 2 cut(s) | 70, 1102 |
| BmsI | GCATC | 4 cut(s) | 102, 370, 1365, 1461 |
| BpiI | GAAGAC | 4 cut(s) | 43, 926, 1335, 1417 |
| Bpu10I | CCTNAGC | 1 cut(s) | 125 |
| Bpu14I | TTCGAA | 1 cut(s) | 713 |
| BpuEI | CTTGAG | 2 cut(s) | 1242, 1324 |
| BsaI | GGTCTC | 1 cut(s) | 852 |
| BsaJI | CCNNGG | 4 cut(s) | 105, 160, 465, 931 |
| BsaWI | WCCGGW | 1 cut(s) | 46 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 14, 44 |
| Bse1I | ACTGG | 1 cut(s) | 639 |
| BseDI | CCNNGG | 4 cut(s) | 105, 160, 465, 931 |
| BseGI | GGATG | 4 cut(s) | 350, 895, 1759, 1799 |
| BseMII | CTCAG | 4 cut(s) | 116, 554, 1604, 1647 |
| BseNI | ACTGG | 1 cut(s) | 639 |
| BseRI | GAGGAG | 3 cut(s) | 413, 1011, 1163 |
| BseSI | GKGCMC | 1 cut(s) | 835 |
| BseXI | GCAGC | 1 cut(s) | 1438 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1520 |
| BshFI | GGCC | 1 cut(s) | 29 |
| BsiEI | CGRYCG | 1 cut(s) | 1520 |
| BsiHKAI | GWGCWC | 2 cut(s) | 835, 1435 |
| BsiSI | CCGG | 1 cut(s) | 47 |
| BsmAI | GTCTC | 3 cut(s) | 852, 954, 1260 |
| BsmBI | CGTCTC | 1 cut(s) | 1260 |
| BsmI | GAATGC | 2 cut(s) | 675, 1735 |
| BsnI | GGCC | 1 cut(s) | 29 |
| Bso31I | GGTCTC | 1 cut(s) | 852 |
| Bsp119I | TTCGAA | 1 cut(s) | 713 |
| Bsp1286I | GDGCHC | 2 cut(s) | 835, 1435 |
| Bsp143I | GATC | 7 cut(s) | 262, 523, 591, 696, 969, 1152, 1687 |
| BspACI | CCGC | 6 cut(s) | 119, 791, 824, 1016, 1354, 1516 |
| BspANI | GGCC | 1 cut(s) | 29 |
| BspCNI | CTCAG | 4 cut(s) | 117, 553, 1603, 1648 |
| BspMAI | CTGCAG | 1 cut(s) | 1623 |
| BspPI | GGATC | 1 cut(s) | 270 |
| BspT104I | TTCGAA | 1 cut(s) | 713 |
| BspTNI | GGTCTC | 1 cut(s) | 852 |
| BsrI | ACTGG | 1 cut(s) | 639 |
| BssECI | CCNNGG | 4 cut(s) | 105, 160, 465, 931 |
| BssMI | GATC | 7 cut(s) | 262, 523, 591, 696, 969, 1152, 1687 |
| BssSI | CACGAG | 1 cut(s) | 1131 |
| BssT1I | CCWWGG | 4 cut(s) | 105, 160, 465, 931 |
| Bst2BI | CACGAG | 1 cut(s) | 1131 |
| Bst4CI | ACNGT | 7 cut(s) | 460, 830, 1114, 1160, 1292, 1610, 1653 |
| Bst6I | CTCTTC | 2 cut(s) | 279, 1755 |
| BstBI | TTCGAA | 1 cut(s) | 713 |
| BstDEI | CTNAG | 4 cut(s) | 125, 540, 1590, 1656 |
| BstF5I | GGATG | 4 cut(s) | 350, 895, 1759, 1799 |
| BstKTI | GATC | 7 cut(s) | 265, 526, 594, 699, 972, 1155, 1690 |
| BstMAI | GTCTC | 3 cut(s) | 852, 954, 1260 |
| BstMBI | GATC | 7 cut(s) | 262, 523, 591, 696, 969, 1152, 1687 |
| BstMCI | CGRYCG | 1 cut(s) | 1520 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 243, 389, 830, 1259 |
| BstNSI | RCATGY | 1 cut(s) | 271 |
| BstSFI | CTRYAG | 1 cut(s) | 1619 |
| BstSLI | GKGCMC | 1 cut(s) | 835 |
| BstV1I | GCAGC | 1 cut(s) | 1438 |
| BstV2I | GAAGAC | 4 cut(s) | 43, 926, 1335, 1417 |
| BstX2I | RGATCY | 2 cut(s) | 591, 696 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 634 |
| BstYI | RGATCY | 2 cut(s) | 591, 696 |
| BsuRI | GGCC | 1 cut(s) | 29 |
| BtrI | CACGTC | 1 cut(s) | 556 |
| BtsCI | GGATG | 4 cut(s) | 350, 895, 1759, 1799 |
| BtsIMutI | CAGTG | 3 cut(s) | 456, 1297, 1615 |
| Cfr13I | GGNCC | 2 cut(s) | 70, 1102 |
| CseI | GACGC | 3 cut(s) | 50, 1242, 1443 |
| Csp6I | GTAC | 1 cut(s) | 1499 |
| CviAII | CATG | 4 cut(s) | 268, 677, 682, 1714 |
| CviQI | GTAC | 1 cut(s) | 1499 |
| DdeI | CTNAG | 4 cut(s) | 125, 540, 1590, 1656 |
| DpnI | GATC | 7 cut(s) | 264, 525, 593, 698, 971, 1154, 1689 |
| DpnII | GATC | 7 cut(s) | 262, 523, 591, 696, 969, 1152, 1687 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 47 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 47 |
| Eam1104I | CTCTTC | 2 cut(s) | 279, 1755 |
| EarI | CTCTTC | 2 cut(s) | 279, 1755 |
| EciI | GGCGGA | 1 cut(s) | 134 |
| Eco130I | CCWWGG | 4 cut(s) | 105, 160, 465, 931 |
| Eco31I | GGTCTC | 1 cut(s) | 852 |
| Eco47I | GGWCC | 2 cut(s) | 70, 1102 |
| Eco57I | CTGAAG | 1 cut(s) | 840 |
| EcoO109I | RGGNCCY | 1 cut(s) | 70 |
| EcoT14I | CCWWGG | 4 cut(s) | 105, 160, 465, 931 |
| ErhI | CCWWGG | 4 cut(s) | 105, 160, 465, 931 |
| Esp3I | CGTCTC | 1 cut(s) | 1260 |
| FaeI | CATG | 4 cut(s) | 271, 680, 685, 1717 |
| FatI | CATG | 4 cut(s) | 267, 676, 681, 1713 |
| FblI | GTMKAC | 1 cut(s) | 14 |
| Fnu4HI | GCNGC | 1 cut(s) | 1452 |
| FokI | GGATG | 4 cut(s) | 357, 902, 1766, 1786 |
| Fsp4HI | GCNGC | 1 cut(s) | 1452 |
| GluI | GCNGC | 1 cut(s) | 1452 |
| HaeIII | GGCC | 1 cut(s) | 29 |
| HapII | CCGG | 1 cut(s) | 47 |
| HgaI | GACGC | 3 cut(s) | 50, 1242, 1443 |
| Hin1II | CATG | 4 cut(s) | 271, 680, 685, 1717 |
| HincII | GTYRAC | 4 cut(s) | 15, 231, 942, 1351 |
| HindII | GTYRAC | 4 cut(s) | 15, 231, 942, 1351 |
| HpaI | GTTAAC | 1 cut(s) | 231 |
| HpaII | CCGG | 1 cut(s) | 47 |
| HphI | GGTGA | 3 cut(s) | 461, 977, 1322 |
| Hpy166II | GTNNAC | 8 cut(s) | 15, 154, 231, 833, 942, 1102, 1234, 1351 |
| Hpy188I | TCNGA | 4 cut(s) | 34, 58, 226, 1657 |
| Hpy188III | TCNNGA | 7 cut(s) | 342, 481, 527, 574, 849, 872, 1751 |
| Hpy8I | GTNNAC | 8 cut(s) | 15, 154, 231, 833, 942, 1102, 1234, 1351 |
| Hpy99I | CGWCG | 4 cut(s) | 16, 19, 38, 44 |
| HpyAV | CCTTC | 7 cut(s) | 53, 61, 88, 416, 504, 652, 1190 |
| HpyCH4III | ACNGT | 7 cut(s) | 460, 830, 1114, 1160, 1292, 1610, 1653 |
| HpyCH4IV | ACGT | 1 cut(s) | 555 |
| HpyCH4V | TGCA | 6 cut(s) | 383, 833, 1474, 1495, 1543, 1621 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 243, 389, 830, 1259 |
| HpyF3I | CTNAG | 4 cut(s) | 125, 540, 1590, 1656 |
| HpySE526I | ACGT | 1 cut(s) | 555 |
| Hsp92II | CATG | 4 cut(s) | 271, 680, 685, 1717 |
| KspAI | GTTAAC | 1 cut(s) | 231 |
| Kzo9I | GATC | 7 cut(s) | 262, 523, 591, 696, 969, 1152, 1687 |
| LmnI | GCTCC | 5 cut(s) | 49, 121, 400, 1438, 1486 |
| Lsp1109I | GCAGC | 1 cut(s) | 1438 |
| LweI | GCATC | 4 cut(s) | 102, 370, 1365, 1461 |
| MaeII | ACGT | 1 cut(s) | 555 |
| MaeIII | GTNAC | 5 cut(s) | 647, 1024, 1310, 1604, 1647 |
| MalI | GATC | 7 cut(s) | 264, 525, 593, 698, 971, 1154, 1689 |
| MboI | GATC | 7 cut(s) | 262, 523, 591, 696, 969, 1152, 1687 |
| MboII | GAAGA | 9 cut(s) | 43, 296, 418, 439, 678, 931, 1340, 1422, 1772 |
| MflI | RGATCY | 2 cut(s) | 591, 696 |
| MhlI | GDGCHC | 2 cut(s) | 835, 1435 |
| MlyI | GAGTC | 6 cut(s) | 17, 346, 437, 1229, 1313, 1544 |
| MmeI | TCCRAC | 2 cut(s) | 57, 146 |
| MspA1I | CMGCKG | 2 cut(s) | 544, 860 |
| MspI | CCGG | 1 cut(s) | 47 |
| Mva1269I | GAATGC | 2 cut(s) | 675, 1735 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 243, 389, 830, 1259 |
| NdeII | GATC | 7 cut(s) | 262, 523, 591, 696, 969, 1152, 1687 |
| NlaIII | CATG | 4 cut(s) | 271, 680, 685, 1717 |
| NmeAIII | GCCGAG | 1 cut(s) | 5 |
| NmuCI | GTSAC | 1 cut(s) | 1310 |
| NspI | RCATGY | 1 cut(s) | 271 |
| NspV | TTCGAA | 1 cut(s) | 713 |
| PctI | GAATGC | 2 cut(s) | 675, 1735 |
| PfeI | GAWTC | 5 cut(s) | 307, 484, 1586, 1613, 1796 |
| PflFI | GACNNNGTC | 1 cut(s) | 946 |
| PkrI | GCNGC | 1 cut(s) | 1453 |
| PleI | GAGTC | 6 cut(s) | 17, 346, 437, 1229, 1312, 1543 |
| PpsI | GAGTC | 6 cut(s) | 17, 346, 437, 1229, 1312, 1543 |
| PpuMI | RGGWCCY | 1 cut(s) | 70 |
| PshBI | ATTAAT | 1 cut(s) | 735 |
| PsiI | TTATAA | 2 cut(s) | 219, 1664 |
| Psp5II | RGGWCCY | 1 cut(s) | 70 |
| PspPI | GGNCC | 2 cut(s) | 70, 1102 |
| PspPPI | RGGWCCY | 1 cut(s) | 70 |
| PstI | CTGCAG | 1 cut(s) | 1623 |
| PsuI | RGATCY | 2 cut(s) | 591, 696 |
| PsyI | GACNNNGTC | 1 cut(s) | 946 |
| PvuII | CAGCTG | 2 cut(s) | 544, 860 |
| RsaI | GTAC | 1 cut(s) | 1500 |
| RsaNI | GTAC | 1 cut(s) | 1499 |
| SalI | GTCGAC | 1 cut(s) | 13 |
| SatI | GCNGC | 1 cut(s) | 1452 |
| Sau3AI | GATC | 7 cut(s) | 262, 523, 591, 696, 969, 1152, 1687 |
| Sau96I | GGNCC | 2 cut(s) | 70, 1102 |
| ScaI | AGTACT | 1 cut(s) | 1500 |
| SchI | GAGTC | 6 cut(s) | 17, 346, 437, 1229, 1313, 1544 |
| SduI | GDGCHC | 2 cut(s) | 835, 1435 |
| SfaNI | GCATC | 4 cut(s) | 102, 370, 1365, 1461 |
| SfcI | CTRYAG | 1 cut(s) | 1619 |
| SfuI | TTCGAA | 1 cut(s) | 713 |
| SgrDI | CGTCGACG | 1 cut(s) | 13 |
| SinI | GGWCC | 2 cut(s) | 70, 1102 |
| SmlI | CTYRAG | 2 cut(s) | 1257, 1339 |
| SmoI | CTYRAG | 2 cut(s) | 1257, 1339 |
| SsiI | CCGC | 6 cut(s) | 119, 791, 824, 1016, 1354, 1516 |
| SspI | AATATT | 1 cut(s) | 1061 |
| StyI | CCWWGG | 4 cut(s) | 105, 160, 465, 931 |
| TaaI | ACNGT | 7 cut(s) | 460, 830, 1114, 1160, 1292, 1610, 1653 |
| TaiI | ACGT | 1 cut(s) | 558 |
| TaqI | TCGA | 6 cut(s) | 14, 526, 713, 850, 1520, 1690 |
| TatI | WGTACW | 1 cut(s) | 1498 |
| TfiI | GAWTC | 5 cut(s) | 307, 484, 1586, 1613, 1796 |
| TscAI | CASTG | 3 cut(s) | 463, 1297, 1615 |
| TseFI | GTSAC | 1 cut(s) | 1310 |
| TseI | GCWGC | 1 cut(s) | 1451 |
| Tsp45I | GTSAC | 1 cut(s) | 1310 |
| TspDTI | ATGAA | 6 cut(s) | 297, 374, 665, 740, 1599, 1809 |
| TspGWI | ACGGA | 2 cut(s) | 32, 1425 |
| TspRI | CASTG | 3 cut(s) | 463, 1297, 1615 |
| Tth111I | GACNNNGTC | 1 cut(s) | 946 |
| VneI | GTGCAC | 1 cut(s) | 831 |
| VpaK11BI | GGWCC | 2 cut(s) | 70, 1102 |
| VspI | ATTAAT | 1 cut(s) | 735 |
| XapI | RAATTY | 4 cut(s) | 489, 530, 782, 1772 |
| XceI | RCATGY | 1 cut(s) | 271 |
| XmiI | GTMKAC | 1 cut(s) | 14 |
| ZrmI | AGTACT | 1 cut(s) | 1500 |