pycom14g06210
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0000261
Physical Location & Seq
Forward (+)
6035200 .. 6037721
2522 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom14g06210.1

Sequence Viewer

Length: 660 bp
ATGGATCAAAGAAAGATTGTTGTGATTTGGTTATGGGTTTGGAAACAACATGAAGAAGATGCATTGCTCTCAATACTTGAGAAGACAGTTGTTAAGAATTTGCGATGTGATAACAGTTGTTTCAAACCTGGAACAATGGCTCAGTTTGAAACAGCTATTAATTTGAAATGTCCTAATGCCAATATAAAGGCAGTTCCACATATTGAGTCCAAAATGAGGAGGTGGAAAAAAGATTATGCAATAGTTTATGACATGGTTAATAAAACTGGTTTTGCATGGAATGATGTACGAAAGTGTATTGAGGTTGATAGCACTGAAGTATGGCAATCCTATGTAAAGGTTAACAAAGAAGCAGAAGGCTGGCTAGGAAAATCATTTCCATTGTATGATAGATTGAATGTTATTTTTGGGAAAAACCGAGCAACCGAAGTAGGAGCTGCAACTCCTACTGAGATGATGTATGAGCCTGGGCACATTAATGAAGATGAAGATGAGGCGGAGACTAGTTCTCCCTCTGTTGCTCGATGGTCCAGTAGTTCAAGTACCCGGAAAAGGAAGAGAGCTACTAATGATAATGATCGTTCTACGGCATTTAAAGAAATGCTTTCTGAATCAGTTGATAAGTTGGGTGAAGTTTTACAAGTTGCTTTTGGGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

220

Amino Acids

25.13

Weight (kDa)

7.63

Isoelectric Point (pI)

61.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_3 PF12776 14 - 111 2e-09 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000261)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18411 FvH4_1g22560 FvH4_1g24290 FvH4_1g24290 FvH4_1g24290 FvH4_1g29434 FvH4_2g04031 FvH4_2g04811 FvH4_2g07610 FvH4_2g09412 FvH4_3g15552 FvH4_3g30720 FvH4_4g05810 FvH4_4g09541 FvH4_4g15171 FvH4_6g09145 FvH4_6g49541 FvH4_7g00320 FvH4_7g11552
malus_domestica MD00G1072400.v1.1 MD01G1188100.v1.1 MD07G1132000.v1.1 MD08G1190700.v1.1 MD10G1011200.v1.1 MD14G1164100.v1.1 MD15G1289200.v1.1 MD15G1289300.v1.1 MD17G1245100.v1.1
prunus_persica Prupe.6G228600_v2.0.a1
pyrus_communis pycom01g07070 pycom02g06890 pycom02g06900 pycom02g13930 pycom04g07470 pycom04g11770 pycom04g21930 pycom05g08520 pycom06g04490 pycom06g09560 pycom07g03750 pycom08g08760 pycom08g13660 pycom09g11520 pycom09g14250 pycom09g14770 pycom10g00720 pycom10g01290 pycom10g10480 pycom10g15700 pycom12420g00130 pycom12g05380 pycom12g08750 pycom13g19010 pycom13g29080 pycom14g06210 pycom14g13680 pycom14g19850 pycom15g22070 pycom15g23440 pycom15g24950 pycom15g25280 pycom16g11100 pycom16g17080 pycom16g26310 pycom17g15650 pycom17g15670 pycom17g20370
rosa_chinensis RchiOBHm_Chr1g0373591 RchiOBHm_Chr2g0105551 RchiOBHm_Chr2g0106711 RchiOBHm_Chr2g0106721 RchiOBHm_Chr7g0219611
rosa_laevigata RLG00000013773 RLG00000017436 RLG00000017533
rosa_multiflora Rmu_co8001842.1_g000001 Rmu_co8158450.1_g000001 Rmu_sc0000516.1_g000067 Rmu_sc0000566.1_g000009 Rmu_sc0000965.1_g000025 Rmu_sc0001718.1_g000001 Rmu_sc0001719.1_g000020 Rmu_sc0001822.1_g000025 Rmu_sc0002219.1_g000003 Rmu_sc0002460.1_g000059 Rmu_sc0002757.1_g000001 Rmu_sc0002860.1_g000001 Rmu_sc0004531.1_g000001 Rmu_sc0005558.1_g000003 Rmu_sc0011218.1_g000001 Rmu_sc0011998.1_g000003 Rmu_sc0015560.1_g000002 Rmu_sc0015560.1_g000003
rosa_roxburghii Rroxscaffold_1G00004200 Rroxscaffold_1G00026570 Rroxscaffold_1G00040370 Rroxscaffold_1G00044120 Rroxscaffold_1G00049590 Rroxscaffold_1G00059030 Rroxscaffold_2G00108440 Rroxscaffold_2G00108850 Rroxscaffold_2G00130680 Rroxscaffold_2G00132980 Rroxscaffold_2G00136860 Rroxscaffold_3G00218610 Rroxscaffold_4G00309940 Rroxscaffold_6G00405560
rosa_rugosa Rorug02G0138000 Rorug02G0138100 Rorug02G0138100 Rorug06G0154000
rosa_samantha Rh1AG121500 Rh1CG116300 Rh2AG189000 Rh2AG509600 Rh2BG200200 Rh2CG194100 Rh2DG195300 Rh5AG114400 Rh5DG488800
rosa_wichuraiana Rw0G022020 Rw1G023650 Rw1G026380 Rw1G034750 Rw1G040770 Rw2G014870 Rw2G016560 Rw4G031190 Rw5G026570 Rw6G003020 Rw6G012060 Rw7G014300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 497
AclWI GGATC 1 cut(s) 12
AcsI RAATTY 1 cut(s) 97
AcuI CTGAAG 1 cut(s) 336
AfaI GTAC 2 cut(s) 288, 544
AfiI CCNNNNNNNGG 2 cut(s) 216, 552
AgsI TTSAA 5 cut(s) 124, 149, 166, 397, 540
AhlI ACTAGT 1 cut(s) 503
AjnI CCWGG 2 cut(s) 127, 466
AluBI AGCT 3 cut(s) 155, 437, 563
AluI AGCT 3 cut(s) 155, 437, 563
Alw26I GTCTC 1 cut(s) 494
AlwI GGATC 1 cut(s) 12
ApeKI GCWGC 1 cut(s) 437
ApoI RAATTY 1 cut(s) 97
AseI ATTAAT 2 cut(s) 159, 477
AspS9I GGNCC 1 cut(s) 528
AsuC2I CCSGG 1 cut(s) 547
AsuHPI GGTGA 1 cut(s) 641
AvaII GGWCC 1 cut(s) 528
BaeGI GKGCMC 1 cut(s) 474
BbsI GAAGAC 1 cut(s) 89
BbvI GCAGC 1 cut(s) 424
BccI CCATC 1 cut(s) 519
BceAI ACGGC 1 cut(s) 603
BciT130I CCWGG 2 cut(s) 129, 468
BcnI CCSGG 1 cut(s) 547
BcoDI GTCTC 1 cut(s) 494
BcuI ACTAGT 1 cut(s) 503
BfaI CTAG 2 cut(s) 365, 504
BisI GCNGC 1 cut(s) 438
BlsI GCNGC 1 cut(s) 439
Bme1390I CCNGG 3 cut(s) 129, 468, 547
Bme18I GGWCC 1 cut(s) 528
BmgT120I GGNCC 1 cut(s) 528
BmrFI CCNGG 3 cut(s) 129, 468, 547
BmsI GCATC 1 cut(s) 49
BpiI GAAGAC 1 cut(s) 89
BpuEI CTTGAG 1 cut(s) 98
BpuMI CCSGG 1 cut(s) 547
BsaBI GATNNNNATC 1 cut(s) 576
BsaJI CCNNGG 1 cut(s) 467
BsaXI ACNNNNNCTCC 2 cut(s) 493, 523
Bsc4I CCNNNNNNNGG 2 cut(s) 216, 552
Bse1I ACTGG 2 cut(s) 271, 531
Bse3DI GCAATG 1 cut(s) 62
Bse8I GATNNNNATC 1 cut(s) 576
BseBI CCWGG 2 cut(s) 129, 468
BseDI CCNNGG 1 cut(s) 467
BseJI GATNNNNATC 1 cut(s) 576
BseLI CCNNNNNNNGG 2 cut(s) 216, 552
BseMI GCAATG 1 cut(s) 62
BseMII CTCAG 2 cut(s) 155, 441
BseNI ACTGG 2 cut(s) 271, 531
BseRI GAGGAG 1 cut(s) 232
BseSI GKGCMC 1 cut(s) 474
BseXI GCAGC 1 cut(s) 424
BsiSI CCGG 1 cut(s) 547
BslI CCNNNNNNNGG 2 cut(s) 216, 552
BsmAI GTCTC 1 cut(s) 494
Bsp1286I GDGCHC 1 cut(s) 474
Bsp143I GATC 2 cut(s) 4, 577
BspACI CCGC 1 cut(s) 497
BspCNI CTCAG 2 cut(s) 154, 442
BspPI GGATC 1 cut(s) 12
BsrDI GCAATG 1 cut(s) 62
BsrI ACTGG 2 cut(s) 271, 531
BssECI CCNNGG 1 cut(s) 467
BssMI GATC 2 cut(s) 4, 577
Bst2UI CCWGG 2 cut(s) 129, 468
Bst4CI ACNGT 2 cut(s) 88, 116
Bst6I CTCTTC 1 cut(s) 551
BstC8I GCNNGC 1 cut(s) 362
BstDEI CTNAG 2 cut(s) 141, 450
BstKTI GATC 2 cut(s) 7, 580
BstMAI GTCTC 1 cut(s) 494
BstMBI GATC 2 cut(s) 4, 577
BstNI CCWGG 2 cut(s) 129, 468
BstSCI CCNGG 3 cut(s) 127, 466, 545
BstSLI GKGCMC 1 cut(s) 474
BstV1I GCAGC 1 cut(s) 424
BstV2I GAAGAC 1 cut(s) 89
BtgZI GCGATG 1 cut(s) 118
BtsIMutI CAGTG 1 cut(s) 312
Cac8I GCNNGC 1 cut(s) 362
Cfr13I GGNCC 1 cut(s) 528
Csp6I GTAC 2 cut(s) 287, 543
CviAII CATG 3 cut(s) 50, 253, 276
CviJI RGCY 7 cut(s) 140, 155, 360, 364, 437, 466, 563
CviKI_1 RGCY 7 cut(s) 140, 155, 360, 364, 437, 466, 563
CviQI GTAC 2 cut(s) 287, 543
DdeI CTNAG 2 cut(s) 141, 450
DpnI GATC 2 cut(s) 6, 579
DpnII GATC 2 cut(s) 4, 577
DraI TTTAAA 1 cut(s) 595
Eam1104I CTCTTC 1 cut(s) 551
EarI CTCTTC 1 cut(s) 551
EciI GGCGGA 1 cut(s) 512
Eco47I GGWCC 1 cut(s) 528
Eco57I CTGAAG 1 cut(s) 336
EcoRII CCWGG 2 cut(s) 127, 466
EcoT22I ATGCAT 1 cut(s) 64
FaeI CATG 3 cut(s) 53, 256, 279
FalI AAGNNNNNCTT 2 cut(s) 588, 620
FatI CATG 3 cut(s) 49, 252, 275
Fnu4HI GCNGC 1 cut(s) 438
Fsp4HI GCNGC 1 cut(s) 438
FspBI CTAG 2 cut(s) 365, 504
GluI GCNGC 1 cut(s) 438
HapII CCGG 1 cut(s) 547
Hin1II CATG 3 cut(s) 53, 256, 279
HincII GTYRAC 1 cut(s) 343
HindII GTYRAC 1 cut(s) 343
HinfI GANTC 2 cut(s) 206, 611
HpaI GTTAAC 1 cut(s) 343
HpaII CCGG 1 cut(s) 547
HphI GGTGA 1 cut(s) 641
Hpy166II GTNNAC 1 cut(s) 343
Hpy188I TCNGA 1 cut(s) 610
Hpy8I GTNNAC 1 cut(s) 343
HpyAV CCTTC 1 cut(s) 350
HpyCH4III ACNGT 2 cut(s) 88, 116
HpyCH4V TGCA 4 cut(s) 62, 239, 275, 440
HpyF3I CTNAG 2 cut(s) 141, 450
Hsp92II CATG 3 cut(s) 53, 256, 279
KspAI GTTAAC 1 cut(s) 343
Kzo9I GATC 2 cut(s) 4, 577
LmnI GCTCC 1 cut(s) 434
LpnPI CCDG 8 cut(s) 114, 141, 252, 346, 453, 480, 544, 560
Lsp1109I GCAGC 1 cut(s) 424
LweI GCATC 1 cut(s) 49
MaeI CTAG 2 cut(s) 365, 504
MalI GATC 2 cut(s) 6, 579
MboI GATC 2 cut(s) 4, 577
MboII GAAGA 6 cut(s) 65, 68, 94, 494, 500, 568
MhlI GDGCHC 1 cut(s) 474
MluCI AATT 2 cut(s) 97, 160
MlyI GAGTC 1 cut(s) 215
MnlI CCTC 5 cut(s) 210, 213, 295, 487, 523
Mph1103I ATGCAT 1 cut(s) 64
MseI TTAA 6 cut(s) 93, 159, 258, 342, 477, 594
MslI CAYNNNNRTG 1 cut(s) 477
MspI CCGG 1 cut(s) 547
MspR9I CCNGG 3 cut(s) 129, 468, 547
MvaI CCWGG 2 cut(s) 129, 468
NciI CCSGG 1 cut(s) 547
NdeII GATC 2 cut(s) 4, 577
NlaIII CATG 3 cut(s) 53, 256, 279
NsiI ATGCAT 1 cut(s) 64
PfeI GAWTC 1 cut(s) 611
PkrI GCNGC 1 cut(s) 439
PleI GAGTC 1 cut(s) 214
PpsI GAGTC 1 cut(s) 214
PshBI ATTAAT 2 cut(s) 159, 477
Psp6I CCWGG 2 cut(s) 127, 466
PspGI CCWGG 2 cut(s) 127, 466
PspPI GGNCC 1 cut(s) 528
RsaI GTAC 2 cut(s) 288, 544
RsaNI GTAC 2 cut(s) 287, 543
RseI CAYNNNNRTG 1 cut(s) 477
SaqAI TTAA 6 cut(s) 93, 159, 258, 342, 477, 594
SatI GCNGC 1 cut(s) 438
Sau3AI GATC 2 cut(s) 4, 577
Sau96I GGNCC 1 cut(s) 528
SchI GAGTC 1 cut(s) 215
ScrFI CCNGG 3 cut(s) 129, 468, 547
SduI GDGCHC 1 cut(s) 474
SetI ASST 7 cut(s) 130, 157, 224, 306, 342, 439, 565
SfaNI GCATC 1 cut(s) 49
SinI GGWCC 1 cut(s) 528
SmiMI CAYNNNNRTG 1 cut(s) 477
SmlI CTYRAG 1 cut(s) 77
SmoI CTYRAG 1 cut(s) 77
SpeI ACTAGT 1 cut(s) 503
Sse9I AATT 2 cut(s) 97, 160
SsiI CCGC 1 cut(s) 497
SspMI CTAG 2 cut(s) 365, 504
StyD4I CCNGG 3 cut(s) 127, 466, 545
TaaI ACNGT 2 cut(s) 88, 116
TaqI TCGA 1 cut(s) 523
TasI AATT 2 cut(s) 97, 160
TfiI GAWTC 1 cut(s) 611
Tru1I TTAA 6 cut(s) 93, 159, 258, 342, 477, 594
Tru9I TTAA 6 cut(s) 93, 159, 258, 342, 477, 594
TscAI CASTG 1 cut(s) 319
TseI GCWGC 1 cut(s) 437
TspDTI ATGAA 3 cut(s) 66, 495, 501
TspRI CASTG 1 cut(s) 319
VpaK11BI GGWCC 1 cut(s) 528
VspI ATTAAT 2 cut(s) 159, 477
XapI RAATTY 1 cut(s) 97
XspI CTAG 2 cut(s) 365, 504
Zsp2I ATGCAT 1 cut(s) 64
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.