pycom17g15670
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0000261
Physical Location & Seq
Forward (+)
13696292 .. 13696702
411 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g15670.1

Sequence Viewer

Length: 411 bp
ATGGCTGAATCAGCAGCAGATGCAATCGAAAATATGGGTTTGAAAAGTGAGGATTGTGAGACTTTCGAGATGCCTCCGCTTTCATCCACCCTATCTCATTCTGTTGCTACATCTAGTGCTTCTCAACTTGTTAGGAAGAGGAAGAGGAGTAGGAATGATGGTGATGCAAATATTGTATCTGTTATCAGTGAAGGTTGGAATAAAGCTGTTACTGAAATGAAGAAATTAGGTGAAAGTTTTACTTTTAGAGAAGCGAAAGCTAGACTACCTTCTGAGCTTCAGGCCATGGGTCTTCCATACGATCAGGTGCTAAGAATTTCAATGAAGTTAGTGAAAGATACCGATCTGATGGGTATTTGGACCACCTTGGATGACTCACAGAAGCCAGATTTCATTAAAGTGTTTATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

137

Amino Acids

15.14

Weight (kDa)

5.47

Isoelectric Point (pI)

53.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000261)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18411 FvH4_1g22560 FvH4_1g24290 FvH4_1g24290 FvH4_1g24290 FvH4_1g29434 FvH4_2g04031 FvH4_2g04811 FvH4_2g07610 FvH4_2g09412 FvH4_3g15552 FvH4_3g30720 FvH4_4g05810 FvH4_4g09541 FvH4_4g15171 FvH4_6g09145 FvH4_6g49541 FvH4_7g00320 FvH4_7g11552
malus_domestica MD00G1072400.v1.1 MD01G1188100.v1.1 MD07G1132000.v1.1 MD08G1190700.v1.1 MD10G1011200.v1.1 MD14G1164100.v1.1 MD15G1289200.v1.1 MD15G1289300.v1.1 MD17G1245100.v1.1
prunus_persica Prupe.6G228600_v2.0.a1
pyrus_communis pycom01g07070 pycom02g06890 pycom02g06900 pycom02g13930 pycom04g07470 pycom04g11770 pycom04g21930 pycom05g08520 pycom06g04490 pycom06g09560 pycom07g03750 pycom08g08760 pycom08g13660 pycom09g11520 pycom09g14250 pycom09g14770 pycom10g00720 pycom10g01290 pycom10g10480 pycom10g15700 pycom12420g00130 pycom12g05380 pycom12g08750 pycom13g19010 pycom13g29080 pycom14g06210 pycom14g13680 pycom14g19850 pycom15g22070 pycom15g23440 pycom15g24950 pycom15g25280 pycom16g11100 pycom16g17080 pycom16g26310 pycom17g15650 pycom17g15670 pycom17g20370
rosa_chinensis RchiOBHm_Chr1g0373591 RchiOBHm_Chr2g0105551 RchiOBHm_Chr2g0106711 RchiOBHm_Chr2g0106721 RchiOBHm_Chr7g0219611
rosa_laevigata RLG00000013773 RLG00000017436 RLG00000017533
rosa_multiflora Rmu_co8001842.1_g000001 Rmu_co8158450.1_g000001 Rmu_sc0000516.1_g000067 Rmu_sc0000566.1_g000009 Rmu_sc0000965.1_g000025 Rmu_sc0001718.1_g000001 Rmu_sc0001719.1_g000020 Rmu_sc0001822.1_g000025 Rmu_sc0002219.1_g000003 Rmu_sc0002460.1_g000059 Rmu_sc0002757.1_g000001 Rmu_sc0002860.1_g000001 Rmu_sc0004531.1_g000001 Rmu_sc0005558.1_g000003 Rmu_sc0011218.1_g000001 Rmu_sc0011998.1_g000003 Rmu_sc0015560.1_g000002 Rmu_sc0015560.1_g000003
rosa_roxburghii Rroxscaffold_1G00004200 Rroxscaffold_1G00026570 Rroxscaffold_1G00040370 Rroxscaffold_1G00044120 Rroxscaffold_1G00049590 Rroxscaffold_1G00059030 Rroxscaffold_2G00108440 Rroxscaffold_2G00108850 Rroxscaffold_2G00130680 Rroxscaffold_2G00132980 Rroxscaffold_2G00136860 Rroxscaffold_3G00218610 Rroxscaffold_4G00309940 Rroxscaffold_6G00405560
rosa_rugosa Rorug02G0138000 Rorug02G0138100 Rorug02G0138100 Rorug06G0154000
rosa_samantha Rh1AG121500 Rh1CG116300 Rh2AG189000 Rh2AG509600 Rh2BG200200 Rh2CG194100 Rh2DG195300 Rh5AG114400 Rh5DG488800
rosa_wichuraiana Rw0G022020 Rw1G023650 Rw1G026380 Rw1G034750 Rw1G040770 Rw2G014870 Rw2G016560 Rw4G031190 Rw5G026570 Rw6G003020 Rw6G012060 Rw7G014300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 77
AcsI RAATTY 1 cut(s) 315
AcuI CTGAAG 1 cut(s) 263
AgsI TTSAA 2 cut(s) 43, 321
AluBI AGCT 3 cut(s) 206, 260, 277
AluI AGCT 3 cut(s) 206, 260, 277
Alw26I GTCTC 1 cut(s) 53
AoxI GGCC 1 cut(s) 282
ApeKI GCWGC 1 cut(s) 14
ApoI RAATTY 1 cut(s) 315
AspS9I GGNCC 1 cut(s) 360
AsuHPI GGTGA 2 cut(s) 173, 242
AvaII GGWCC 1 cut(s) 360
BbsI GAAGAC 1 cut(s) 284
BbvI GCAGC 1 cut(s) 26
BccI CCATC 2 cut(s) 152, 343
BcoDI GTCTC 1 cut(s) 53
BfaI CTAG 2 cut(s) 114, 261
BisI GCNGC 1 cut(s) 15
BlsI GCNGC 1 cut(s) 16
Bme18I GGWCC 1 cut(s) 360
BmgT120I GGNCC 1 cut(s) 360
BmsI GCATC 3 cut(s) 10, 60, 154
BpiI GAAGAC 1 cut(s) 284
BsaBI GATNNNNATC 1 cut(s) 342
BsaJI CCNNGG 2 cut(s) 285, 366
Bse8I GATNNNNATC 1 cut(s) 342
BseDI CCNNGG 2 cut(s) 285, 366
BseGI GGATG 2 cut(s) 83, 376
BseJI GATNNNNATC 1 cut(s) 342
BseMII CTCAG 1 cut(s) 264
BseRI GAGGAG 1 cut(s) 160
BseXI GCAGC 1 cut(s) 26
BshFI GGCC 1 cut(s) 284
BsmAI GTCTC 1 cut(s) 53
BsnI GGCC 1 cut(s) 284
Bsp143I GATC 2 cut(s) 301, 343
Bsp19I CCATGG 1 cut(s) 285
BspACI CCGC 1 cut(s) 77
BspANI GGCC 1 cut(s) 284
BspCNI CTCAG 1 cut(s) 265
BssECI CCNNGG 2 cut(s) 285, 366
BssMI GATC 2 cut(s) 301, 343
BssT1I CCWWGG 2 cut(s) 285, 366
Bst6I CTCTTC 2 cut(s) 131, 137
BstAPI GCANNNNNTGC 1 cut(s) 20
BstDEI CTNAG 2 cut(s) 273, 311
BstDSI CCRYGG 1 cut(s) 285
BstF5I GGATG 2 cut(s) 83, 376
BstKTI GATC 2 cut(s) 304, 346
BstMAI GTCTC 1 cut(s) 53
BstMBI GATC 2 cut(s) 301, 343
BstMWI GCNNNNNNNGC 2 cut(s) 11, 20
BstV1I GCAGC 1 cut(s) 26
BstV2I GAAGAC 1 cut(s) 284
BsuRI GGCC 1 cut(s) 284
BtgI CCRYGG 1 cut(s) 285
BtsCI GGATG 2 cut(s) 83, 376
BtsIMutI CAGTG 1 cut(s) 193
Cfr13I GGNCC 1 cut(s) 360
CviAII CATG 1 cut(s) 286
CviJI RGCY 6 cut(s) 5, 206, 260, 277, 284, 385
CviKI_1 RGCY 6 cut(s) 5, 206, 260, 277, 284, 385
DdeI CTNAG 2 cut(s) 273, 311
DpnI GATC 2 cut(s) 303, 345
DpnII GATC 2 cut(s) 301, 343
Eam1104I CTCTTC 2 cut(s) 131, 137
EarI CTCTTC 2 cut(s) 131, 137
Eco130I CCWWGG 2 cut(s) 285, 366
Eco47I GGWCC 1 cut(s) 360
Eco57I CTGAAG 1 cut(s) 263
EcoT14I CCWWGG 2 cut(s) 285, 366
ErhI CCWWGG 2 cut(s) 285, 366
FaeI CATG 1 cut(s) 289
FaiI YATR 4 cut(s) 35, 287, 298, 407
FalI AAGNNNNNCTT 2 cut(s) 226, 258
FatI CATG 1 cut(s) 285
Fnu4HI GCNGC 1 cut(s) 15
FokI GGATG 2 cut(s) 70, 383
Fsp4HI GCNGC 1 cut(s) 15
FspBI CTAG 2 cut(s) 114, 261
GluI GCNGC 1 cut(s) 15
HaeIII GGCC 1 cut(s) 284
Hin1II CATG 1 cut(s) 289
HinfI GANTC 2 cut(s) 8, 374
HphI GGTGA 2 cut(s) 173, 242
Hpy188I TCNGA 2 cut(s) 274, 348
Hpy188III TCNNGA 1 cut(s) 67
HpyAV CCTTC 2 cut(s) 185, 279
HpyCH4V TGCA 2 cut(s) 23, 167
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 20
HpyF3I CTNAG 2 cut(s) 273, 311
Hsp92II CATG 1 cut(s) 289
Kzo9I GATC 2 cut(s) 301, 343
LpnPI CCDG 3 cut(s) 266, 290, 399
Lsp1109I GCAGC 1 cut(s) 26
LweI GCATC 3 cut(s) 10, 60, 154
MaeI CTAG 2 cut(s) 114, 261
MaeIII GTNAC 1 cut(s) 208
MalI GATC 2 cut(s) 303, 345
MboI GATC 2 cut(s) 301, 343
MboII GAAGA 4 cut(s) 148, 154, 232, 284
MluCI AATT 2 cut(s) 224, 315
MlyI GAGTC 1 cut(s) 368
MmeI TCCRAC 1 cut(s) 176
MnlI CCTC 4 cut(s) 43, 84, 132, 138
MseI TTAA 1 cut(s) 396
MslI CAYNNNNRTG 1 cut(s) 398
MwoI GCNNNNNNNGC 2 cut(s) 11, 20
NcoI CCATGG 1 cut(s) 285
NdeII GATC 2 cut(s) 301, 343
NlaIII CATG 1 cut(s) 289
PfeI GAWTC 1 cut(s) 8
PkrI GCNGC 1 cut(s) 16
PleI GAGTC 1 cut(s) 368
PpsI GAGTC 1 cut(s) 368
PspPI GGNCC 1 cut(s) 360
RseI CAYNNNNRTG 1 cut(s) 398
SaqAI TTAA 1 cut(s) 396
SatI GCNGC 1 cut(s) 15
Sau3AI GATC 2 cut(s) 301, 343
Sau96I GGNCC 1 cut(s) 360
SchI GAGTC 1 cut(s) 368
SetI ASST 8 cut(s) 196, 208, 232, 262, 271, 279, 309, 368
SfaNI GCATC 3 cut(s) 10, 60, 154
SgeI CNNG 9 cut(s) 79, 126, 140, 273, 293, 298, 317, 379, 398
SinI GGWCC 1 cut(s) 360
SmiMI CAYNNNNRTG 1 cut(s) 398
Sse9I AATT 2 cut(s) 224, 315
SsiI CCGC 1 cut(s) 77
SspI AATATT 1 cut(s) 172
SspMI CTAG 2 cut(s) 114, 261
StyI CCWWGG 2 cut(s) 285, 366
TaqI TCGA 2 cut(s) 27, 66
TasI AATT 2 cut(s) 224, 315
TfiI GAWTC 1 cut(s) 8
Tru1I TTAA 1 cut(s) 396
Tru9I TTAA 1 cut(s) 396
TscAI CASTG 1 cut(s) 193
TseI GCWGC 1 cut(s) 14
TspDTI ATGAA 4 cut(s) 72, 233, 338, 382
TspRI CASTG 1 cut(s) 193
VpaK11BI GGWCC 1 cut(s) 360
XapI RAATTY 1 cut(s) 315
XspI CTAG 2 cut(s) 114, 261
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.