pycom17g20370
MYB Family

isoform X1

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
Physical Location & Seq
Reverse (-)
18594265 .. 18595255
991 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g20370.1

Sequence Viewer

Length: 894 bp
ATGGATAACCACAATAATTTGAATGCTTCTCAAGAGCCAAAAGGAAGAAGGCGTAAATGGGAAGCATTTGAGGAAGAAGTATTACTATCCATTCTTGAGGATTTTGTTGCTCAGAAGCAACGATGTGACACAGGTGCTTTCAAACAAGGTACTTTGATTGAAATAGCGAAAGCTGTCAATGTTTTATGTCCTAATTCAAATATAAAGGCAACTCCACATATTGAGTCAAAGTTGAAGAAATGGAAAAAAACATATAGTTTGGTCCTTGACATGATAAACACAAGTGGATTTGCATGGAATGATGTCAAAAAGTGCGTTGAAGTTGACAGTGATGACGCATGGCAAACTTATGTGCAGAAAAATAAAAAAGCTGATGGATGGAGAAGCAAACCTTTTCCACTGTACGATAGATTTGCATATATATTTGGAAAAGATCGGGCTACGGGTAATGTAGCCGAAACCCCTGCTGAAATGATGGAGGAACAAAGTCATGTTCATGTTGGTGCAAGTGATATTGGAGGTGAAAATGTTGTATCTTCAATGAACCAACAAAGCCAACAAAGCACCCCATCTGAAAATAGCCAAAGAAAGAGGAAAAGAGCTATGGGAAATTCAAGTGATGGAACCGAGGCAATTATTAGTGGACTGAAAGAATTTTATGTTGGAAGTGGGAAGAGGATGCAAATGGTAACTGAAGCTTTAGTTCAAGGTACTGCAAATCATACTGACATAGCTAACGAACTTGAAGCAATGGGTCTTTCTCCTATGGATCAAATTGATGCATTGACTCTTATTTTGGAAAAACCACAAAATGTGGGAGTGTTCAGGGCAATCAATTCGGGACTCAAGAAAGTGTTCGTCCAAAGGCTTTTAAGCGACAAAGCAAGCGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

298

Amino Acids

33.08

Weight (kDa)

7.68

Isoelectric Point (pI)

45.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_3 PF12776 19 - 117 3.6e-09 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000261)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18411 FvH4_1g22560 FvH4_1g24290 FvH4_1g24290 FvH4_1g24290 FvH4_1g29434 FvH4_2g04031 FvH4_2g04811 FvH4_2g07610 FvH4_2g09412 FvH4_3g15552 FvH4_3g30720 FvH4_4g05810 FvH4_4g09541 FvH4_4g15171 FvH4_6g09145 FvH4_6g49541 FvH4_7g00320 FvH4_7g11552
malus_domestica MD00G1072400.v1.1 MD01G1188100.v1.1 MD07G1132000.v1.1 MD08G1190700.v1.1 MD10G1011200.v1.1 MD14G1164100.v1.1 MD15G1289200.v1.1 MD15G1289300.v1.1 MD17G1245100.v1.1
prunus_persica Prupe.6G228600_v2.0.a1
pyrus_communis pycom01g07070 pycom02g06890 pycom02g06900 pycom02g13930 pycom04g07470 pycom04g11770 pycom04g21930 pycom05g08520 pycom06g04490 pycom06g09560 pycom07g03750 pycom08g08760 pycom08g13660 pycom09g11520 pycom09g14250 pycom09g14770 pycom10g00720 pycom10g01290 pycom10g10480 pycom10g15700 pycom12420g00130 pycom12g05380 pycom12g08750 pycom13g19010 pycom13g29080 pycom14g06210 pycom14g13680 pycom14g19850 pycom15g22070 pycom15g23440 pycom15g24950 pycom15g25280 pycom16g11100 pycom16g17080 pycom16g26310 pycom17g15650 pycom17g15670 pycom17g20370
rosa_chinensis RchiOBHm_Chr1g0373591 RchiOBHm_Chr2g0105551 RchiOBHm_Chr2g0106711 RchiOBHm_Chr2g0106721 RchiOBHm_Chr7g0219611
rosa_laevigata RLG00000013773 RLG00000017436 RLG00000017533
rosa_multiflora Rmu_co8001842.1_g000001 Rmu_co8158450.1_g000001 Rmu_sc0000516.1_g000067 Rmu_sc0000566.1_g000009 Rmu_sc0000965.1_g000025 Rmu_sc0001718.1_g000001 Rmu_sc0001719.1_g000020 Rmu_sc0001822.1_g000025 Rmu_sc0002219.1_g000003 Rmu_sc0002460.1_g000059 Rmu_sc0002757.1_g000001 Rmu_sc0002860.1_g000001 Rmu_sc0004531.1_g000001 Rmu_sc0005558.1_g000003 Rmu_sc0011218.1_g000001 Rmu_sc0011998.1_g000003 Rmu_sc0015560.1_g000002 Rmu_sc0015560.1_g000003
rosa_roxburghii Rroxscaffold_1G00004200 Rroxscaffold_1G00026570 Rroxscaffold_1G00040370 Rroxscaffold_1G00044120 Rroxscaffold_1G00049590 Rroxscaffold_1G00059030 Rroxscaffold_2G00108440 Rroxscaffold_2G00108850 Rroxscaffold_2G00130680 Rroxscaffold_2G00132980 Rroxscaffold_2G00136860 Rroxscaffold_3G00218610 Rroxscaffold_4G00309940 Rroxscaffold_6G00405560
rosa_rugosa Rorug02G0138000 Rorug02G0138100 Rorug02G0138100 Rorug06G0154000
rosa_samantha Rh1AG121500 Rh1CG116300 Rh2AG189000 Rh2AG509600 Rh2BG200200 Rh2CG194100 Rh2DG195300 Rh5AG114400 Rh5DG488800
rosa_wichuraiana Rw0G022020 Rw1G023650 Rw1G026380 Rw1G034750 Rw1G040770 Rw2G014870 Rw2G016560 Rw4G031190 Rw5G026570 Rw6G003020 Rw6G012060 Rw7G014300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 888
AclWI GGATC 1 cut(s) 777
AcsI RAATTY 2 cut(s) 610, 653
AcuI CTGAAG 1 cut(s) 714
AfaI GTAC 3 cut(s) 151, 404, 712
AjuI GAANNNNNNNTTGG 2 cut(s) 645, 677
AluBI AGCT 5 cut(s) 173, 371, 602, 698, 734
AluI AGCT 5 cut(s) 173, 371, 602, 698, 734
AlwI GGATC 1 cut(s) 777
ApoI RAATTY 2 cut(s) 610, 653
ArsI GACNNNNNNTTYG 2 cut(s) 778, 810
Asp700I GAANNNNTTC 1 cut(s) 854
AspS9I GGNCC 1 cut(s) 262
AsuHPI GGTGA 1 cut(s) 533
AvaII GGWCC 1 cut(s) 262
BarI GAAGNNNNNNTAC 2 cut(s) 66, 98
BccI CCATC 5 cut(s) 368, 372, 469, 577, 614
BcgI CGANNNNNNTGC 6 cut(s) 395, 429, 446, 480, 819, 853
Bme18I GGWCC 1 cut(s) 262
BmgT120I GGNCC 1 cut(s) 262
BmiI GGNNCC 1 cut(s) 625
BmsI GCATC 2 cut(s) 669, 769
BpuEI CTTGAG 3 cut(s) 15, 116, 830
BsaJI CCNNGG 1 cut(s) 627
Bse3DI GCAATG 1 cut(s) 756
BseDI CCNNGG 1 cut(s) 627
BseGI GGATG 2 cut(s) 383, 684
BseMI GCAATG 1 cut(s) 756
BseMII CTCAG 1 cut(s) 125
BsgI GTGCAG 1 cut(s) 374
BslFI GGGAC 1 cut(s) 855
BsmFI GGGAC 1 cut(s) 855
BsmI GAATGC 1 cut(s) 28
Bsp143I GATC 2 cut(s) 433, 769
BspACI CCGC 1 cut(s) 888
BspCNI CTCAG 1 cut(s) 124
BspLI GGNNCC 1 cut(s) 625
BspPI GGATC 1 cut(s) 777
BsrDI GCAATG 1 cut(s) 756
BssECI CCNNGG 1 cut(s) 627
BssMI GATC 2 cut(s) 433, 769
Bst4CI ACNGT 2 cut(s) 329, 402
Bst6I CTCTTC 1 cut(s) 668
BstC8I GCNNGC 1 cut(s) 886
BstDEI CTNAG 1 cut(s) 111
BstF5I GGATG 2 cut(s) 383, 684
BstKTI GATC 2 cut(s) 436, 772
BstMBI GATC 2 cut(s) 433, 769
BstMWI GCNNNNNNNGC 1 cut(s) 561
BtsCI GGATG 2 cut(s) 383, 684
BtsIMutI CAGTG 2 cut(s) 334, 398
Cac8I GCNNGC 1 cut(s) 886
Cfr13I GGNCC 1 cut(s) 262
CseI GACGC 1 cut(s) 344
Csp6I GTAC 3 cut(s) 150, 403, 711
CviAII CATG 5 cut(s) 271, 294, 339, 491, 497
CviQI GTAC 3 cut(s) 150, 403, 711
DdeI CTNAG 1 cut(s) 111
DpnI GATC 2 cut(s) 435, 771
DpnII GATC 2 cut(s) 433, 769
Eam1104I CTCTTC 1 cut(s) 668
EarI CTCTTC 1 cut(s) 668
Eco47I GGWCC 1 cut(s) 262
Eco57I CTGAAG 1 cut(s) 714
EcoT22I ATGCAT 1 cut(s) 784
FaeI CATG 5 cut(s) 274, 297, 342, 494, 500
FalI AAGNNNNNCTT 2 cut(s) 376, 408
FaqI GGGAC 1 cut(s) 855
FatI CATG 5 cut(s) 270, 293, 338, 490, 496
FokI GGATG 2 cut(s) 390, 691
HgaI GACGC 1 cut(s) 344
Hin1II CATG 5 cut(s) 274, 297, 342, 494, 500
HincII GTYRAC 1 cut(s) 325
HindII GTYRAC 1 cut(s) 325
HindIII AAGCTT 1 cut(s) 696
HinfI GANTC 3 cut(s) 224, 787, 843
HphI GGTGA 1 cut(s) 533
Hpy166II GTNNAC 2 cut(s) 325, 644
Hpy188I TCNGA 2 cut(s) 114, 574
Hpy188III TCNNGA 4 cut(s) 32, 95, 840, 847
Hpy8I GTNNAC 2 cut(s) 325, 644
HpyAV CCTTC 1 cut(s) 42
HpyCH4III ACNGT 2 cut(s) 329, 402
HpyCH4V TGCA 7 cut(s) 293, 355, 416, 506, 682, 716, 782
HpyF10VI GCNNNNNNNGC 1 cut(s) 561
HpyF3I CTNAG 1 cut(s) 111
Hsp92II CATG 5 cut(s) 274, 297, 342, 494, 500
Kzo9I GATC 2 cut(s) 433, 769
LpnPI CCDG 3 cut(s) 117, 477, 811
LweI GCATC 2 cut(s) 669, 769
MaeIII GTNAC 2 cut(s) 125, 688
MalI GATC 2 cut(s) 435, 771
MboI GATC 2 cut(s) 433, 769
MboII GAAGA 5 cut(s) 57, 86, 247, 528, 685
MluCI AATT 7 cut(s) 16, 193, 610, 633, 653, 774, 835
MlyI GAGTC 3 cut(s) 233, 781, 837
MmeI TCCRAC 1 cut(s) 643
MnlI CCTC 7 cut(s) 64, 91, 472, 512, 585, 622, 669
Mph1103I ATGCAT 1 cut(s) 784
MroXI GAANNNNTTC 1 cut(s) 854
MseI TTAA 1 cut(s) 872
MslI CAYNNNNRTG 2 cut(s) 495, 501
Mva1269I GAATGC 1 cut(s) 28
MwoI GCNNNNNNNGC 1 cut(s) 561
NdeII GATC 2 cut(s) 433, 769
NlaIII CATG 5 cut(s) 274, 297, 342, 494, 500
NlaIV GGNNCC 1 cut(s) 625
NmuCI GTSAC 1 cut(s) 125
NsiI ATGCAT 1 cut(s) 784
PctI GAATGC 1 cut(s) 28
PdmI GAANNNNTTC 1 cut(s) 854
PleI GAGTC 3 cut(s) 232, 781, 837
PpsI GAGTC 3 cut(s) 232, 781, 837
PspN4I GGNNCC 1 cut(s) 625
PspPI GGNCC 1 cut(s) 262
RsaI GTAC 3 cut(s) 151, 404, 712
RsaNI GTAC 3 cut(s) 150, 403, 711
RseI CAYNNNNRTG 2 cut(s) 495, 501
SaqAI TTAA 1 cut(s) 872
Sau3AI GATC 2 cut(s) 433, 769
Sau96I GGNCC 1 cut(s) 262
SchI GAGTC 3 cut(s) 233, 781, 837
SfaNI GCATC 2 cut(s) 669, 769
SinI GGWCC 1 cut(s) 262
SmiMI CAYNNNNRTG 2 cut(s) 495, 501
SmlI CTYRAG 3 cut(s) 30, 95, 845
SmoI CTYRAG 3 cut(s) 30, 95, 845
Sse9I AATT 7 cut(s) 16, 193, 610, 633, 653, 774, 835
SsiI CCGC 1 cut(s) 888
TaaI ACNGT 2 cut(s) 329, 402
TasI AATT 7 cut(s) 16, 193, 610, 633, 653, 774, 835
Tru1I TTAA 1 cut(s) 872
Tru9I TTAA 1 cut(s) 872
TscAI CASTG 2 cut(s) 334, 405
TseFI GTSAC 1 cut(s) 125
Tsp45I GTSAC 1 cut(s) 125
TspDTI ATGAA 2 cut(s) 485, 557
TspRI CASTG 2 cut(s) 334, 405
VpaK11BI GGWCC 1 cut(s) 262
XapI RAATTY 2 cut(s) 610, 653
XmnI GAANNNNTTC 1 cut(s) 854
Zsp2I ATGCAT 1 cut(s) 784
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.