Rmu_sc0000516.1_g000067
MYB Family

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000516.1
OG0000261
Physical Location & Seq
Forward (+)
287106 .. 288060
955 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000516.1_g000067.1.cds

Sequence Viewer

Length: 729 bp
atggaaagtggtgatgaaaatacaaagcaagggaagtcaaggcatgtatggaccagctttgaagaaaaatctttgttgaatgttcttgacgaaattattgctggaggacaacgctgcgacactagaaatatcaaatctggtactttactgaaaatcgagaatgctttaaatcttttatgtctcaattccaatctgaaggcaagtccacatattgagtcaaagttgaagaaacttaagaaagattatagcataatctatgacatgatgaacaatagtggatttgcatggaatgatataaaaaaaaatgcattgaagttgatagtaatgaagtatgggaaacgtatttgcaggagtgaccgtgctactggaaatggggctgaggtccctgctgatataatggaggagcaaagcgacaatgaagatgatgtaggcattgagaatgacacaagccccatgtcaaagagaaaagatagcacgggacaatctcaggtcaaatctggaaaaagaatgcaagcagtgactgataccatagtgaaaggtaatgaagatcgatctgatattgctaaggaacttaagaaaatgagactttcttttctagaccaaattgaggcattgaaaatcattttggataagccccaaaatatctctgtgttcatgttcttagatgatgaagtgagaaaagtgtatgtcgagaacttgcttgcgggcactgctagaggatctacctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

242

Amino Acids

27.16

Weight (kDa)

8.28

Isoelectric Point (pI)

41.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000261)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18411 FvH4_1g22560 FvH4_1g24290 FvH4_1g24290 FvH4_1g24290 FvH4_1g29434 FvH4_2g04031 FvH4_2g04811 FvH4_2g07610 FvH4_2g09412 FvH4_3g15552 FvH4_3g30720 FvH4_4g05810 FvH4_4g09541 FvH4_4g15171 FvH4_6g09145 FvH4_6g49541 FvH4_7g00320 FvH4_7g11552
malus_domestica MD00G1072400.v1.1 MD01G1188100.v1.1 MD07G1132000.v1.1 MD08G1190700.v1.1 MD10G1011200.v1.1 MD14G1164100.v1.1 MD15G1289200.v1.1 MD15G1289300.v1.1 MD17G1245100.v1.1
prunus_persica Prupe.6G228600_v2.0.a1
pyrus_communis pycom01g07070 pycom02g06890 pycom02g06900 pycom02g13930 pycom04g07470 pycom04g11770 pycom04g21930 pycom05g08520 pycom06g04490 pycom06g09560 pycom07g03750 pycom08g08760 pycom08g13660 pycom09g11520 pycom09g14250 pycom09g14770 pycom10g00720 pycom10g01290 pycom10g10480 pycom10g15700 pycom12420g00130 pycom12g05380 pycom12g08750 pycom13g19010 pycom13g29080 pycom14g06210 pycom14g13680 pycom14g19850 pycom15g22070 pycom15g23440 pycom15g24950 pycom15g25280 pycom16g11100 pycom16g17080 pycom16g26310 pycom17g15650 pycom17g15670 pycom17g20370
rosa_chinensis RchiOBHm_Chr1g0373591 RchiOBHm_Chr2g0105551 RchiOBHm_Chr2g0106711 RchiOBHm_Chr2g0106721 RchiOBHm_Chr7g0219611
rosa_laevigata RLG00000013773 RLG00000017436 RLG00000017533
rosa_multiflora Rmu_co8001842.1_g000001 Rmu_co8158450.1_g000001 Rmu_sc0000516.1_g000067 Rmu_sc0000566.1_g000009 Rmu_sc0000965.1_g000025 Rmu_sc0001718.1_g000001 Rmu_sc0001719.1_g000020 Rmu_sc0001822.1_g000025 Rmu_sc0002219.1_g000003 Rmu_sc0002460.1_g000059 Rmu_sc0002757.1_g000001 Rmu_sc0002860.1_g000001 Rmu_sc0004531.1_g000001 Rmu_sc0005558.1_g000003 Rmu_sc0011218.1_g000001 Rmu_sc0011998.1_g000003 Rmu_sc0015560.1_g000002 Rmu_sc0015560.1_g000003
rosa_roxburghii Rroxscaffold_1G00004200 Rroxscaffold_1G00026570 Rroxscaffold_1G00040370 Rroxscaffold_1G00044120 Rroxscaffold_1G00049590 Rroxscaffold_1G00059030 Rroxscaffold_2G00108440 Rroxscaffold_2G00108850 Rroxscaffold_2G00130680 Rroxscaffold_2G00132980 Rroxscaffold_2G00136860 Rroxscaffold_3G00218610 Rroxscaffold_4G00309940 Rroxscaffold_6G00405560
rosa_rugosa Rorug02G0138000 Rorug02G0138100 Rorug02G0138100 Rorug06G0154000
rosa_samantha Rh1AG121500 Rh1CG116300 Rh2AG189000 Rh2AG509600 Rh2BG200200 Rh2CG194100 Rh2DG195300 Rh5AG114400 Rh5DG488800
rosa_wichuraiana Rw0G022020 Rw1G023650 Rw1G026380 Rw1G034750 Rw1G040770 Rw2G014870 Rw2G016560 Rw4G031190 Rw5G026570 Rw6G003020 Rw6G012060 Rw7G014300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 704
AclWI GGATC 1 cut(s) 727
AcuI CTGAAG 1 cut(s) 215
AfaI GTAC 1 cut(s) 142
AfiI CCNNNNNNNGG 1 cut(s) 607
AflII CTTAAG 2 cut(s) 233, 572
AgsI TTSAA 5 cut(s) 62, 79, 226, 313, 616
AjuI GAANNNNNNNTTGG 2 cut(s) 608, 640
AluBI AGCT 1 cut(s) 57
AluI AGCT 1 cut(s) 57
Alw26I GTCTC 2 cut(s) 185, 577
AlwI GGATC 1 cut(s) 727
AlwNI CAGNNNCTG 1 cut(s) 521
ApeKI GCWGC 1 cut(s) 114
AspS9I GGNCC 2 cut(s) 51, 382
AsuHPI GGTGA 1 cut(s) 23
AvaII GGWCC 2 cut(s) 51, 382
BaeGI GKGCMC 1 cut(s) 710
BaeI ACNNNNGTAYC 2 cut(s) 516, 549
BbvCI CCTCAGC 1 cut(s) 378
BbvI GCAGC 1 cut(s) 101
BcgI CGANNNNNNTGC 2 cut(s) 80, 114
BcoDI GTCTC 2 cut(s) 185, 577
BfaI CTAG 4 cut(s) 123, 596, 714, 727
BfrI CTTAAG 2 cut(s) 233, 572
BisI GCNGC 1 cut(s) 115
BlsI GCNGC 1 cut(s) 116
Bme18I GGWCC 2 cut(s) 51, 382
BmgT120I GGNCC 2 cut(s) 51, 382
BmiI GGNNCC 1 cut(s) 384
BpmI CTGGAG 1 cut(s) 123
Bpu10I CCTNAGC 2 cut(s) 378, 564
Bsa29I ATCGAT 1 cut(s) 550
BsaXI ACNNNNNCTCC 2 cut(s) 343, 373
Bsc4I CCNNNNNNNGG 1 cut(s) 607
Bse1I ACTGG 1 cut(s) 370
BseCI ATCGAT 1 cut(s) 550
BseLI CCNNNNNNNGG 1 cut(s) 607
BseMII CTCAG 2 cut(s) 369, 500
BseNI ACTGG 1 cut(s) 370
BseRI GAGGAG 1 cut(s) 416
BseSI GKGCMC 1 cut(s) 710
BseXI GCAGC 1 cut(s) 101
BshVI ATCGAT 1 cut(s) 550
BslFI GGGAC 2 cut(s) 368, 492
BslI CCNNNNNNNGG 1 cut(s) 607
BsmAI GTCTC 2 cut(s) 185, 577
BsmFI GGGAC 2 cut(s) 368, 492
BsmI GAATGC 2 cut(s) 166, 513
Bsp1286I GDGCHC 1 cut(s) 710
Bsp143I GATC 3 cut(s) 547, 551, 719
BspACI CCGC 1 cut(s) 704
BspCNI CTCAG 2 cut(s) 370, 499
BspDI ATCGAT 1 cut(s) 550
BspLI GGNNCC 1 cut(s) 384
BspPI GGATC 1 cut(s) 727
BspTI CTTAAG 2 cut(s) 233, 572
BsrI ACTGG 1 cut(s) 370
BssMI GATC 3 cut(s) 547, 551, 719
Bst4CI ACNGT 1 cut(s) 359
BstAFI CTTAAG 2 cut(s) 233, 572
BstC8I GCNNGC 3 cut(s) 513, 702, 706
BstDEI CTNAG 4 cut(s) 378, 486, 564, 661
BstKTI GATC 3 cut(s) 550, 554, 722
BstMAI GTCTC 2 cut(s) 185, 577
BstMBI GATC 3 cut(s) 547, 551, 719
BstMWI GCNNNNNNNGC 1 cut(s) 710
BstNSI RCATGY 1 cut(s) 47
BstSLI GKGCMC 1 cut(s) 710
BstV1I GCAGC 1 cut(s) 101
BstX2I RGATCY 1 cut(s) 719
BstYI RGATCY 1 cut(s) 719
Bsu15I ATCGAT 1 cut(s) 550
BsuTUI ATCGAT 1 cut(s) 550
BtsI GCAGTG 2 cut(s) 522, 708
BtsIMutI CAGTG 2 cut(s) 522, 708
Cac8I GCNNGC 3 cut(s) 513, 702, 706
CaiI CAGNNNCTG 1 cut(s) 521
Cfr13I GGNCC 2 cut(s) 51, 382
ClaI ATCGAT 1 cut(s) 550
Csp6I GTAC 1 cut(s) 141
CviAII CATG 5 cut(s) 44, 262, 285, 454, 655
CviJI RGCY 4 cut(s) 57, 377, 450, 634
CviKI_1 RGCY 4 cut(s) 57, 377, 450, 634
CviQI GTAC 1 cut(s) 141
DdeI CTNAG 4 cut(s) 378, 486, 564, 661
DpnI GATC 3 cut(s) 549, 553, 721
DpnII GATC 3 cut(s) 547, 551, 719
DraI TTTAAA 1 cut(s) 168
Eco47I GGWCC 2 cut(s) 51, 382
Eco57I CTGAAG 1 cut(s) 215
EcoO109I RGGNCCY 1 cut(s) 382
EcoT22I ATGCAT 1 cut(s) 310
FaeI CATG 5 cut(s) 47, 265, 288, 457, 658
FaqI GGGAC 2 cut(s) 368, 492
FatI CATG 5 cut(s) 43, 261, 284, 453, 654
FauI CCCGC 1 cut(s) 697
Fnu4HI GCNGC 1 cut(s) 115
Fsp4HI GCNGC 1 cut(s) 115
FspBI CTAG 4 cut(s) 123, 596, 714, 727
GluI GCNGC 1 cut(s) 115
GsuI CTGGAG 1 cut(s) 123
Hin1II CATG 5 cut(s) 47, 265, 288, 457, 658
HinfI GANTC 1 cut(s) 215
HphI GGTGA 1 cut(s) 23
Hpy166II GTNNAC 1 cut(s) 206
Hpy188I TCNGA 2 cut(s) 195, 556
Hpy188III TCNNGA 5 cut(s) 86, 157, 498, 596, 691
Hpy8I GTNNAC 1 cut(s) 206
HpyAV CCTTC 1 cut(s) 190
HpyCH4III ACNGT 1 cut(s) 359
HpyCH4IV ACGT 1 cut(s) 340
HpyCH4V TGCA 4 cut(s) 284, 308, 348, 511
HpyF10VI GCNNNNNNNGC 1 cut(s) 710
HpyF3I CTNAG 4 cut(s) 378, 486, 564, 661
HpySE526I ACGT 1 cut(s) 340
Hsp92II CATG 5 cut(s) 47, 265, 288, 457, 658
Kzo9I GATC 3 cut(s) 547, 551, 719
LmnI GCTCC 1 cut(s) 403
LpnPI CCDG 8 cut(s) 67, 87, 123, 334, 351, 399, 473, 483
Lsp1109I GCAGC 1 cut(s) 101
MaeI CTAG 4 cut(s) 123, 596, 714, 727
MaeII ACGT 1 cut(s) 340
MaeIII GTNAC 2 cut(s) 353, 517
MalI GATC 3 cut(s) 549, 553, 721
MboI GATC 3 cut(s) 547, 551, 719
MboII GAAGA 4 cut(s) 74, 238, 431, 557
MflI RGATCY 1 cut(s) 719
MhlI GDGCHC 1 cut(s) 710
MluCI AATT 3 cut(s) 93, 184, 603
MlyI GAGTC 1 cut(s) 224
MnlI CCTC 5 cut(s) 98, 373, 394, 601, 710
Mph1103I ATGCAT 1 cut(s) 310
MseI TTAA 3 cut(s) 167, 234, 573
MspCI CTTAAG 2 cut(s) 233, 572
Mva1269I GAATGC 2 cut(s) 166, 513
MwoI GCNNNNNNNGC 1 cut(s) 710
NdeII GATC 3 cut(s) 547, 551, 719
NlaIII CATG 5 cut(s) 47, 265, 288, 457, 658
NlaIV GGNNCC 1 cut(s) 384
NmuCI GTSAC 2 cut(s) 353, 517
NsiI ATGCAT 1 cut(s) 310
NspI RCATGY 1 cut(s) 47
PctI GAATGC 2 cut(s) 166, 513
PkrI GCNGC 1 cut(s) 116
PleI GAGTC 1 cut(s) 223
PpsI GAGTC 1 cut(s) 223
PpuMI RGGWCCY 1 cut(s) 382
Psp5II RGGWCCY 1 cut(s) 382
PspN4I GGNNCC 1 cut(s) 384
PspPI GGNCC 2 cut(s) 51, 382
PspPPI RGGWCCY 1 cut(s) 382
PstNI CAGNNNCTG 1 cut(s) 521
PsuI RGATCY 1 cut(s) 719
RsaI GTAC 1 cut(s) 142
RsaNI GTAC 1 cut(s) 141
SaqAI TTAA 3 cut(s) 167, 234, 573
SatI GCNGC 1 cut(s) 115
Sau3AI GATC 3 cut(s) 547, 551, 719
Sau96I GGNCC 2 cut(s) 51, 382
SchI GAGTC 1 cut(s) 224
SduI GDGCHC 1 cut(s) 710
SetI ASST 6 cut(s) 59, 343, 384, 492, 541, 728
SinI GGWCC 2 cut(s) 51, 382
SmlI CTYRAG 2 cut(s) 233, 572
SmoI CTYRAG 2 cut(s) 233, 572
Sse9I AATT 3 cut(s) 93, 184, 603
SsiI CCGC 1 cut(s) 704
SspMI CTAG 4 cut(s) 123, 596, 714, 727
TaaI ACNGT 1 cut(s) 359
TaiI ACGT 1 cut(s) 343
TaqI TCGA 3 cut(s) 156, 550, 690
TasI AATT 3 cut(s) 93, 184, 603
Tru1I TTAA 3 cut(s) 167, 234, 573
Tru9I TTAA 3 cut(s) 167, 234, 573
TscAI CASTG 2 cut(s) 522, 715
TseFI GTSAC 2 cut(s) 353, 517
TseI GCWGC 1 cut(s) 114
Tsp45I GTSAC 2 cut(s) 353, 517
TspDTI ATGAA 7 cut(s) 30, 281, 341, 432, 558, 643, 684
TspRI CASTG 2 cut(s) 522, 715
Vha464I CTTAAG 2 cut(s) 233, 572
VpaK11BI GGWCC 2 cut(s) 51, 382
XbaI TCTAGA 1 cut(s) 595
XceI RCATGY 1 cut(s) 47
XspI CTAG 4 cut(s) 123, 596, 714, 727
Zsp2I ATGCAT 1 cut(s) 310
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.