Basic Information

Type: Sequence Only

Biological Identity

Species

rosa_samantha

Chromosome

Unknown

Orthogroup ID

OG0000261

Physical Location & Seq

Genomic Coordinates Reverse (-)

0 .. 0

Gene Structure 1 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG189000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3402 bp

ATGGGGAACTCGTCGACGGACGACTCGGCCTCCGACGGCGACGCTCTGGTCTTCTCCGAAGGCGAGAAGGTCCTCGCCTTCCACAACACTCGCATCTACGAAGCCAAGGTTCAAAAGGTGGAGCTGAGGAAAAACGAATGGAAATACTTTGTTCACTATCTTGGTTGGAATAAAGTATATGTTTCCTTTTCTATCCCACCTTATTGTTTTTTCAAAGCTTATAATTCAGAGTTAACGAGTTGGAACGAATGGGTAGGTGTGGATCGCCTGTTGAAACATAATGAAGAGAATATAAAGAAGCAACAGGCTCTTAACAAGAAACAGGACATAATTACAAAGTCTGGACGTTTGACTCAAATGAAGCCAAAAAGCTCTACTGATGCAAAAATGGAGAAAGAGGAGCAGAAGAACAATGTGGCAGAAGGGAAGAAGCGAAAGAATGACTGTGGACACTGTTGCCTTGGGAAAACTTGTGAGATTCAAATTCCTTCAAAATTAAGGAAGCAAGTCATTGATGATCGGGAATTTGCTTCTCAGCTGGATAAGGACATTTTAGGAATGGATAGTAGTCAACTCAATGAGGCAAATAAAAAAGGGAGTAGACGGGTATGGACGAGAGAGGAGGAGTCTGCACTTTTAGGCATCCTAGAGGATCTAGTTGCAAAGAATCATCGTCATGATAATGGTACTTTCAAAAGTGGAGCATTGAATCAAGTAGAAAATGCCTTGCACAATTTGTTTCCAGAGTCTGGCCTGAAAGCTAAGCCACACATTGAGTCAAAAATGAAAATATTGAAGAAGCAGTTCCGTATAGTTTATGAAATGGTGAACAAAACTGGGTTTGAATGGAATGATGAAAAGAAATGTGTGATGGTTGATACTGAAGAGACATGGAAAGCGTATCTTCAGCATCACAAGGAGGCAGATGGGTGGAGGGGTAAATTTTTTCCGCTTTATGACAGGCTTGGTTATATATTCAAAGCGGACTGTGCACTCGGAGAAGGGTCTCGAACTTCAGCTGATATAGATCAGGAGTTGAATTGTATGGATGTTAGTACAACTGACTTTGAGATAGAGGAAGACACTTTTCCAAGGTCAGTTGACCAAGTCTCAACTAACAAGCAAACAGATCAATCTCATTCCTCACCAAGTAAGAGGAGAAGAGATGATGACTCCGGAGGTAGTAGTCAAATCAATGAAACAAATGAAAAGAATGGCAGACATTTATGGACCAAGGAGGAGGAGGATGCAGTTTTAGGCATTCTAGAGGATCTAGTTGCAAAGGGTCCTCTTTATGATAATGGTTCTTTCAGATCTGGTACATTTGCTCAAATAGAAGATGCCTTGCATCATTTATGTCTAGCCTCAGGGCTGAAAGCTAGACATATTGAGTCAAAAGTTAAGAACTGGAAAAGGAAATGCAGCATAGTAAGTGACATGCTCAACAGAACTGGGTTTAGCTGGAATAATGTGATGAAATGTGTGGAGGTTGACAATGGAGAAACATGGAAATCCTATGTTCAGACTCATAGGGAGGCAGATAAGTGGAGGGGAAAATATTTTCCAATTTTTGACAGACTTACTCATATATTTGATGTGAACCGCGCAACTGTAAAAACAACCCAAGCACAAGTTGAGATAGCCGAGGAGATCAACTGTTTTGAGGTTAATTCAACTGACTTTGGGATAGAGGAAGGCACTTGTCCAAGGTCAGTTGACCAATTGATTACCAAGCAAACAGATCATTCTCATTCCTCACAAAGAAAGAGGAGGAGAGAGGATGATACAGGAGGTAGTAGTCATATCGATGAGACAAGTAAAAGAAGGCACAGACGTACGTGGACCGAGGAGGAGGAAGACGCACTTTTAGGCATTCTAGAGGATCTAATTGCGAAGGGTCACCGTTACGAAAAGGGTACTTTCAAACCTGGTACGTCAACTCTAATAGAAGATGCCTTATCCAAAGTATGTCCAGCCTCAGGACTGAAAGCTAGCCCACATGTTGAGTCAAAAATTAAAAAGTTGAAACAGGAATGCAGTATTGTATGTGACATGCTCAACACAGATGGCTTTAGTTGGAACAATGAGATGAAATGTGTGGAGGTTGACAGTGAAACATGGAAAAGATATGTTCAGCATCATAAGGAGGCAGAGAAGTGGAGGGGGAAATTTTTTCCACTTTTTGAAAGACTTATTTATATATTTGAAGTGGGCCGCCCAATTGCAAAAACAACCCAAACTCCAGCTGAAATGGTTGAGGAGATGAACTGTGTTGAGTTTAATACAACTGACTTTGGGACACTGAAAGACGCTTGTCCAAAGGCAGTTGAACAAGTCTCAACAACCAAGGACATAGATCAATCTCATTCACTACCAAGTAAGGGAAGAGAAGATGATATGGGAGGTATTCATCATATCAATGAGACAAATAGAAAAAGGAGGAGGCGTAAATGGACCAAGGAGGAGGAGGCTGCACTTTTAAGCATCTTAGAGGATCTAGTTGCAAAGGGTCATCGTTTCCATAATAAAACTTTCAGATCTGGTACATTGACACTAATAGAAAACACTTTGTGCAATTTATGTCCAGCATCAGGACTGAAAGCTTACCCACACGTTGAGTCAAAAATTAAAAAATTGAAGAAGGGATTCAGTACAGTGTGTGACATACTCAACAGTGGGTTTGGGTGGAATGATAGAACAAAATGTGTGGTGGTTGAATGTGAAGAATCATGGAAAGGCTTTGTTCAGCATCATAAGGAGGCAGGGAAGTGGAGATTCAGACATTTTCCACTTTATGATAGACTTGCTCATATATTTGGAGTGGACTCCACAAATGTAAAAGCATCTCAAGCTCATATTGAAGCAGTAGAGGGGATTAACAGTGATGAGGTTGAGTCAGGTGACTTGGAGATAGAGGAAGACACTAACTCAAGGTCTGTTGACCGCATCTCAACAAACAAAGAAGCAGATAATTCTCATTCCCCACAAAGAAATAGCAGAAGACAAGATGATGATTTAGGTGCTTCGTTAAACAAAGTTGCTGCGTCATTTGTGGGAATGATGCAAACTTCAAAGGAGCAAATGCGAGTACTAATCGAAAATCTGCAGTCGAAAGATAAAAATGAGTCCCTGCAACCAAAAGATGTCAATGAGTCTCTATCCAAAGATAAGAATGAATCTCAGCAATCCAAAGGTAACAATGAATCTCTGCAGTCAAAAGATAACAGAACAGGTCAGTCACGGTCTGAGCTTAAAAAGTTGGGGCTTTCTATTACTGATCGAGTGAAAGCATTAAGACTACTCATGGCTGATACTTGGAATGCTGATTTTTTTCTTACTTTGGATGAGGAAGAGAAATTGGAATTTGTAAAGCAACTCATTGATGAATCATCTAAGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000123 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006325 GO:0006338 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0031248 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0051276 GO:0070013 GO:0071704 GO:0071840 GO:1901564 GO:1902493 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MRG Tudor-knot

Protein Analysis

1133

Amino Acids

129.69

Weight (kDa)

6.52

Isoelectric Point (pI)

51.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-bind_3	PF12776	204 - 301	7.4e-12	Myb/SANT-like DNA-binding domain
Myb_DNA-bind_3	PF12776	613 - 710	1.5e-10	Myb/SANT-like DNA-binding domain
Myb_DNA-bind_3	PF12776	817 - 912	2.1e-08	Myb/SANT-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000261)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g18411 FvH4_1g22560 FvH4_1g24290 FvH4_1g24290 FvH4_1g24290 FvH4_1g29434 FvH4_2g04031 FvH4_2g04811 FvH4_2g07610 FvH4_2g09412 FvH4_3g15552 FvH4_3g30720 FvH4_4g05810 FvH4_4g09541 FvH4_4g15171 FvH4_6g09145 FvH4_6g49541 FvH4_7g00320 FvH4_7g11552
malus_domestica	MD00G1072400.v1.1 MD01G1188100.v1.1 MD07G1132000.v1.1 MD08G1190700.v1.1 MD10G1011200.v1.1 MD14G1164100.v1.1 MD15G1289200.v1.1 MD15G1289300.v1.1 MD17G1245100.v1.1
prunus_persica	Prupe.6G228600_v2.0.a1
pyrus_communis	pycom01g07070 pycom02g06890 pycom02g06900 pycom02g13930 pycom04g07470 pycom04g11770 pycom04g21930 pycom05g08520 pycom06g04490 pycom06g09560 pycom07g03750 pycom08g08760 pycom08g13660 pycom09g11520 pycom09g14250 pycom09g14770 pycom10g00720 pycom10g01290 pycom10g10480 pycom10g15700 pycom12420g00130 pycom12g05380 pycom12g08750 pycom13g19010 pycom13g29080 pycom14g06210 pycom14g13680 pycom14g19850 pycom15g22070 pycom15g23440 pycom15g24950 pycom15g25280 pycom16g11100 pycom16g17080 pycom16g26310 pycom17g15650 pycom17g15670 pycom17g20370
rosa_chinensis	RchiOBHm_Chr1g0373591 RchiOBHm_Chr2g0105551 RchiOBHm_Chr2g0106711 RchiOBHm_Chr2g0106721 RchiOBHm_Chr7g0219611
rosa_laevigata	RLG00000013773 RLG00000017436 RLG00000017533
rosa_multiflora	Rmu_co8001842.1_g000001 Rmu_co8158450.1_g000001 Rmu_sc0000516.1_g000067 Rmu_sc0000566.1_g000009 Rmu_sc0000965.1_g000025 Rmu_sc0001718.1_g000001 Rmu_sc0001719.1_g000020 Rmu_sc0001822.1_g000025 Rmu_sc0002219.1_g000003 Rmu_sc0002460.1_g000059 Rmu_sc0002757.1_g000001 Rmu_sc0002860.1_g000001 Rmu_sc0004531.1_g000001 Rmu_sc0005558.1_g000003 Rmu_sc0011218.1_g000001 Rmu_sc0011998.1_g000003 Rmu_sc0015560.1_g000002 Rmu_sc0015560.1_g000003
rosa_roxburghii	Rroxscaffold_1G00004200 Rroxscaffold_1G00026570 Rroxscaffold_1G00040370 Rroxscaffold_1G00044120 Rroxscaffold_1G00049590 Rroxscaffold_1G00059030 Rroxscaffold_2G00108440 Rroxscaffold_2G00108850 Rroxscaffold_2G00130680 Rroxscaffold_2G00132980 Rroxscaffold_2G00136860 Rroxscaffold_3G00218610 Rroxscaffold_4G00309940 Rroxscaffold_6G00405560
rosa_rugosa	Rorug02G0138000 Rorug02G0138100 Rorug02G0138100 Rorug06G0154000
rosa_samantha	Rh1AG121500 Rh1CG116300 Rh2AG189000 Rh2AG509600 Rh2BG200200 Rh2CG194100 Rh2DG195300 Rh5AG114400 Rh5DG488800
rosa_wichuraiana	Rw0G022020 Rw1G023650 Rw1G026380 Rw1G034750 Rw1G040770 Rw2G014870 Rw2G016560 Rw4G031190 Rw5G026570 Rw6G003020 Rw6G012060 Rw7G014300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	222
AasI	GACNNNNNNGTC	1 cut(s)	47
AccB7I	CCANNNNNTGG	1 cut(s)	749
AccI	GTMKAC	2 cut(s)	14, 601
AccII	CGCG	1 cut(s)	1605
AccIII	TCCGGA	1 cut(s)	1175
AciI	CCGC	5 cut(s)	950, 983, 1603, 2215, 2944
AclWI	GGATC	5 cut(s)	270, 660, 1278, 1890, 2502
AcsI	RAATTY	5 cut(s)	483, 524, 941, 2168, 3362
AcuI	CTGAAG	3 cut(s)	890, 903, 999
AdeI	CACNNNGTG	1 cut(s)	2571
AfaI	GTAC	9 cut(s)	688, 1057, 1321, 1837, 1918, 1933, 2545, 2653, 3090
AfiI	CCNNNNNNNGG	4 cut(s)	749, 1979, 2381, 2591
AflIII	ACRYGT	2 cut(s)	1999, 2611
AjnI	CCWGG	1 cut(s)	1927
Alw21I	GWGCWC	1 cut(s)	994
Alw26I	GTCTC	7 cut(s)	881, 1011, 1114, 1805, 2341, 2417, 3159
Alw44I	GTGCAC	1 cut(s)	990
AlwI	GGATC	5 cut(s)	270, 660, 1278, 1890, 2502
AlwNI	CAGNNNCTG	1 cut(s)	749
Aor13HI	TCCGGA	1 cut(s)	1175
AoxI	GGCC	3 cut(s)	27, 751, 2212
ApaLI	GTGCAC	1 cut(s)	990
ApeKI	GCWGC	3 cut(s)	1422, 2471, 3041
ApoI	RAATTY	5 cut(s)	483, 524, 941, 2168, 3362
Asp700I	GAANNNNTTC	2 cut(s)	803, 2645
AspLEI	GCGC	1 cut(s)	1607
AspS9I	GGNCC	6 cut(s)	70, 1230, 1286, 1842, 2212, 2454
AsuHPI	GGTGA	4 cut(s)	838, 1137, 1892, 2912
AsuNHI	GCTAGC	1 cut(s)	1991
AvaII	GGWCC	5 cut(s)	70, 1230, 1286, 1842, 2454
AxyI	CCTNAGG	2 cut(s)	1366, 1978
BaeGI	GKGCMC	1 cut(s)	994
BbsI	GAAGAC	5 cut(s)	43, 1086, 1863, 2925, 3007
Bbv12I	GWGCWC	1 cut(s)	994
BbvCI	CCTCAGC	1 cut(s)	125
BbvI	GCAGC	3 cut(s)	1434, 2458, 3028
BccI	CCATC	3 cut(s)	865, 920, 2060
BceAI	ACGGC	1 cut(s)	52
BciT130I	CCWGG	1 cut(s)	1929
BcoDI	GTCTC	7 cut(s)	881, 1011, 1114, 1805, 2341, 2417, 3159
BfaI	CTAG	9 cut(s)	647, 656, 1265, 1274, 1361, 1380, 1877, 1992, 2498
BfmI	CTRYAG	2 cut(s)	3104, 3209
BglII	AGATCT	2 cut(s)	1313, 2537
BisI	GCNGC	4 cut(s)	1423, 2215, 2472, 3042
BlpI	GCTNAGC	1 cut(s)	762
BlsI	GCNGC	4 cut(s)	1424, 2216, 2473, 3043
BmcAI	AGTACT	1 cut(s)	3090
Bme1390I	CCNGG	1 cut(s)	1929
Bme18I	GGWCC	5 cut(s)	70, 1230, 1286, 1842, 2454
BmgT120I	GGNCC	6 cut(s)	70, 1230, 1286, 1842, 2212, 2454
BmiI	GGNNCC	1 cut(s)	1287
BmrFI	CCNGG	1 cut(s)	1929
BmrI	ACTGGG	2 cut(s)	846, 1461
BmtI	GCTAGC	1 cut(s)	1995
BmuI	ACTGGG	2 cut(s)	846, 1461
BoxI	GACNNNNGTC	1 cut(s)	2313
BpiI	GAAGAC	5 cut(s)	43, 1086, 1863, 2925, 3007
BpmI	CTGGAG	1 cut(s)	2226
Bpu10I	CCTNAGC	1 cut(s)	125
Bpu1102I	GCTNAGC	1 cut(s)	762
BpuEI	CTTGAG	2 cut(s)	2832, 2914
Bsa29I	ATCGAT	1 cut(s)	1806
BsaAI	YACGTR	1 cut(s)	1839
BsaBI	GATNNNNATC	1 cut(s)	1026
BsaI	GGTCTC	1 cut(s)	1011
BsaJI	CCNNGG	9 cut(s)	105, 460, 1091, 1233, 1644, 1706, 1845, 2346, 2457
BsaWI	WCCGGW	1 cut(s)	1175
BsaXI	ACNNNNNCTCC	6 cut(s)	14, 44, 2224, 2254, 2431, 2461
Bsc4I	CCNNNNNNNGG	4 cut(s)	749, 1979, 2381, 2591
Bse1I	ACTGG	3 cut(s)	841, 1412, 1456
Bse21I	CCTNAGG	2 cut(s)	1366, 1978
Bse8I	GATNNNNATC	1 cut(s)	1026
BseAI	TCCGGA	1 cut(s)	1175
BseBI	CCWGG	1 cut(s)	1929
BseCI	ATCGAT	1 cut(s)	1806
BseDI	CCNNGG	9 cut(s)	105, 460, 1091, 1233, 1644, 1706, 1845, 2346, 2457
BseGI	GGATG	5 cut(s)	642, 1054, 1252, 1786, 3349
BseJI	GATNNNNATC	1 cut(s)	1026
BseLI	CCNNNNNNNGG	4 cut(s)	749, 1979, 2381, 2591
BseMII	CTCAG	6 cut(s)	116, 548, 1380, 1992, 3194, 3237
BseNI	ACTGG	3 cut(s)	841, 1412, 1456
BseSI	GKGCMC	1 cut(s)	994
BseXI	GCAGC	3 cut(s)	1434, 2458, 3028
BsgI	GTGCAG	2 cut(s)	615, 2457
Bsh1236I	CGCG	1 cut(s)	1605
BshFI	GGCC	3 cut(s)	29, 753, 2214
BshVI	ATCGAT	1 cut(s)	1806
BsiHKAI	GWGCWC	1 cut(s)	994
BsiSI	CCGG	1 cut(s)	1176
BsiWI	CGTACG	1 cut(s)	1835
BslFI	GGGAC	2 cut(s)	2311, 3112
BslI	CCNNNNNNNGG	4 cut(s)	749, 1979, 2381, 2591
BsmAI	GTCTC	7 cut(s)	881, 1011, 1114, 1805, 2341, 2417, 3159
BsmFI	GGGAC	2 cut(s)	2311, 3112
BsmI	GAATGC	4 cut(s)	1260, 1872, 2039, 3325
BsnI	GGCC	3 cut(s)	29, 753, 2214
Bso31I	GGTCTC	1 cut(s)	1011
Bsp1286I	GDGCHC	1 cut(s)	994
Bsp13I	TCCGGA	1 cut(s)	1175
Bsp1720I	GCTNAGC	1 cut(s)	762
BspACI	CCGC	5 cut(s)	950, 983, 1603, 2215, 2944
BspANI	GGCC	3 cut(s)	29, 753, 2214
BspCNI	CTCAG	6 cut(s)	117, 547, 1379, 1991, 3193, 3238
BspDI	ATCGAT	1 cut(s)	1806
BspEI	TCCGGA	1 cut(s)	1175
BspFNI	CGCG	1 cut(s)	1605
BspHI	TCATGA	1 cut(s)	676
BspLI	GGNNCC	1 cut(s)	1287
BspMAI	CTGCAG	2 cut(s)	3108, 3213
BspOI	GCTAGC	1 cut(s)	1995
BspPI	GGATC	5 cut(s)	270, 660, 1278, 1890, 2502
BspTNI	GGTCTC	1 cut(s)	1011
BsrI	ACTGG	3 cut(s)	841, 1412, 1456
BssECI	CCNNGG	9 cut(s)	105, 460, 1091, 1233, 1644, 1706, 1845, 2346, 2457
BssT1I	CCWWGG	7 cut(s)	105, 460, 1091, 1233, 1706, 2346, 2457
Bst2UI	CCWGG	1 cut(s)	1929
Bst6I	CTCTTC	5 cut(s)	279, 879, 1156, 2380, 3345
BstBAI	YACGTR	1 cut(s)	1839
BstC8I	GCNNGC	1 cut(s)	1993
BstDEI	CTNAG	9 cut(s)	125, 534, 762, 1366, 1978, 2488, 3180, 3246, 3393
BstEII	GGTNACC	1 cut(s)	1898
BstF5I	GGATG	5 cut(s)	642, 1054, 1252, 1786, 3349
BstFNI	CGCG	1 cut(s)	1605
BstHHI	GCGC	1 cut(s)	1607
BstMAI	GTCTC	7 cut(s)	881, 1011, 1114, 1805, 2341, 2417, 3159
BstMWI	GCNNNNNNNGC	2 cut(s)	989, 2849
BstNI	CCWGG	1 cut(s)	1929
BstNSI	RCATGY	3 cut(s)	1441, 2003, 2056
BstPAI	GACNNNNGTC	1 cut(s)	2313
BstPI	GGTNACC	1 cut(s)	1898
BstSCI	CCNGG	1 cut(s)	1927
BstSFI	CTRYAG	2 cut(s)	3104, 3209
BstSLI	GKGCMC	1 cut(s)	994
BstUI	CGCG	1 cut(s)	1605
BstV1I	GCAGC	3 cut(s)	1434, 2458, 3028
BstV2I	GAAGAC	5 cut(s)	43, 1086, 1863, 2925, 3007
BstX2I	RGATCY	6 cut(s)	652, 1270, 1313, 1882, 2494, 2537
BstYI	RGATCY	6 cut(s)	652, 1270, 1313, 1882, 2494, 2537
Bsu15I	ATCGAT	1 cut(s)	1806
Bsu36I	CCTNAGG	2 cut(s)	1366, 1978
BsuRI	GGCC	3 cut(s)	29, 753, 2214
BsuTUI	ATCGAT	1 cut(s)	1806
BtsCI	GGATG	5 cut(s)	642, 1054, 1252, 1786, 3349
BtsIMutI	CAGTG	6 cut(s)	451, 2116, 2300, 2661, 2680, 2887
Cac8I	GCNNGC	1 cut(s)	1993
CaiI	CAGNNNCTG	1 cut(s)	749
CciI	TCATGA	1 cut(s)	676
CfoI	GCGC	1 cut(s)	1607
Cfr13I	GGNCC	6 cut(s)	70, 1230, 1286, 1842, 2212, 2454
ClaI	ATCGAT	1 cut(s)	1806
CseI	GACGC	4 cut(s)	50, 1868, 2318, 3033
CsiI	ACCWGGT	1 cut(s)	1927
Csp6I	GTAC	9 cut(s)	687, 1056, 1320, 1836, 1917, 1932, 2544, 2652, 3089
CspCI	CAANNNNNGTGG	2 cut(s)	2688, 2723
CviAII	CATG	9 cut(s)	677, 891, 1438, 1506, 2000, 2053, 2118, 2730, 3304
CviQI	GTAC	9 cut(s)	687, 1056, 1320, 1836, 1917, 1932, 2544, 2652, 3089
DdeI	CTNAG	9 cut(s)	125, 534, 762, 1366, 1978, 2488, 3180, 3246, 3393
DraIII	CACNNNGTG	1 cut(s)	2571
DrdI	GACNNNNNNGTC	1 cut(s)	47
DseDI	GACNNNNNNGTC	1 cut(s)	47
Eam1104I	CTCTTC	5 cut(s)	279, 879, 1156, 2380, 3345
EarI	CTCTTC	5 cut(s)	279, 879, 1156, 2380, 3345
Eco130I	CCWWGG	7 cut(s)	105, 460, 1091, 1233, 1706, 2346, 2457
Eco31I	GGTCTC	1 cut(s)	1011
Eco47I	GGWCC	5 cut(s)	70, 1230, 1286, 1842, 2454
Eco57I	CTGAAG	3 cut(s)	890, 903, 999
Eco81I	CCTNAGG	2 cut(s)	1366, 1978
Eco91I	GGTNACC	1 cut(s)	1898
EcoO109I	RGGNCCY	2 cut(s)	70, 1286
EcoO65I	GGTNACC	1 cut(s)	1898
EcoRII	CCWGG	1 cut(s)	1927
EcoT14I	CCWWGG	7 cut(s)	105, 460, 1091, 1233, 1706, 2346, 2457
ErhI	CCWWGG	7 cut(s)	105, 460, 1091, 1233, 1706, 2346, 2457
FaeI	CATG	9 cut(s)	680, 894, 1441, 1509, 2003, 2056, 2121, 2733, 3307
FalI	AAGNNNNNCTT	4 cut(s)	888, 920, 1848, 1880
FaqI	GGGAC	2 cut(s)	2311, 3112
FatI	CATG	9 cut(s)	676, 890, 1437, 1505, 1999, 2052, 2117, 2729, 3303
FblI	GTMKAC	2 cut(s)	14, 601
Fnu4HI	GCNGC	4 cut(s)	1423, 2215, 2472, 3042
FokI	GGATG	5 cut(s)	629, 1061, 1259, 1793, 3356
Fsp4HI	GCNGC	4 cut(s)	1423, 2215, 2472, 3042
FspBI	CTAG	9 cut(s)	647, 656, 1265, 1274, 1361, 1380, 1877, 1992, 2498
GlaI	GCGC	1 cut(s)	1606
GluI	GCNGC	4 cut(s)	1423, 2215, 2472, 3042
GsuI	CTGGAG	1 cut(s)	2226
HaeIII	GGCC	3 cut(s)	29, 753, 2214
HapII	CCGG	1 cut(s)	1176
HgaI	GACGC	4 cut(s)	50, 1868, 2318, 3033
HhaI	GCGC	1 cut(s)	1607
Hin1II	CATG	9 cut(s)	680, 894, 1441, 1509, 2003, 2056, 2121, 2733, 3307
Hin6I	GCGC	1 cut(s)	1605
HinP1I	GCGC	1 cut(s)	1605
HincII	GTYRAC	9 cut(s)	15, 234, 572, 1102, 1492, 1717, 1938, 2107, 2941
HindII	GTYRAC	9 cut(s)	15, 234, 572, 1102, 1492, 1717, 1938, 2107, 2941
HindIII	AAGCTT	2 cut(s)	216, 2601
HpaI	GTTAAC	1 cut(s)	234
HpaII	CCGG	1 cut(s)	1176
HphI	GGTGA	4 cut(s)	838, 1137, 1892, 2912
Hpy188I	TCNGA	9 cut(s)	34, 58, 229, 998, 1313, 1524, 2537, 2780, 3247
Hpy99I	CGWCG	4 cut(s)	16, 19, 38, 44
HpyCH4IV	ACGT	5 cut(s)	346, 1834, 1838, 1934, 2613
HpyF10VI	GCNNNNNNNGC	2 cut(s)	989, 2849
HpyF3I	CTNAG	9 cut(s)	125, 534, 762, 1366, 1978, 2488, 3180, 3246, 3393
HpySE526I	ACGT	5 cut(s)	346, 1834, 1838, 1934, 2613
Hsp92II	CATG	9 cut(s)	680, 894, 1441, 1509, 2003, 2056, 2121, 2733, 3307
HspAI	GCGC	1 cut(s)	1605
Kpn2I	TCCGGA	1 cut(s)	1175
KspAI	GTTAAC	1 cut(s)	234
LmnI	GCTCC	4 cut(s)	121, 400, 701, 3076
Lsp1109I	GCAGC	3 cut(s)	1434, 2458, 3028
MabI	ACCWGGT	1 cut(s)	1927
MaeI	CTAG	9 cut(s)	647, 656, 1265, 1274, 1361, 1380, 1877, 1992, 2498
MaeII	ACGT	5 cut(s)	346, 1834, 1838, 1934, 2613
MaeIII	GTNAC	8 cut(s)	1433, 1898, 1904, 2048, 2660, 2900, 3194, 3237
MfeI	CAATTG	2 cut(s)	1721, 2220
MflI	RGATCY	6 cut(s)	652, 1270, 1313, 1882, 2494, 2537
MhlI	GDGCHC	1 cut(s)	994
MmeI	TCCRAC	4 cut(s)	57, 146, 221, 2057
MroI	TCCGGA	1 cut(s)	1175
MroXI	GAANNNNTTC	2 cut(s)	803, 2645
MslI	CAYNNNNRTG	4 cut(s)	675, 681, 1806, 2418
MspA1I	CMGCKG	3 cut(s)	538, 1019, 2246
MspI	CCGG	1 cut(s)	1176
MspR9I	CCNGG	1 cut(s)	1929
MunI	CAATTG	2 cut(s)	1721, 2220
Mva1269I	GAATGC	4 cut(s)	1260, 1872, 2039, 3325
MvaI	CCWGG	1 cut(s)	1929
MvnI	CGCG	1 cut(s)	1605
MwoI	GCNNNNNNNGC	2 cut(s)	989, 2849
NheI	GCTAGC	1 cut(s)	1991
NlaIII	CATG	9 cut(s)	680, 894, 1441, 1509, 2003, 2056, 2121, 2733, 3307
NlaIV	GGNNCC	1 cut(s)	1287
NmeAIII	GCCGAG	2 cut(s)	5, 1669
NmuCI	GTSAC	6 cut(s)	1433, 1898, 2048, 2660, 2900, 3237
NspI	RCATGY	3 cut(s)	1441, 2003, 2056
PagI	TCATGA	1 cut(s)	676
PciI	ACATGT	1 cut(s)	1999
PctI	GAATGC	4 cut(s)	1260, 1872, 2039, 3325
PdmI	GAANNNNTTC	2 cut(s)	803, 2645
PfeI	GAWTC	9 cut(s)	478, 667, 709, 2646, 2726, 2775, 3176, 3203, 3386
Pfl23II	CGTACG	1 cut(s)	1835
PflFI	GACNNNGTC	1 cut(s)	1106
PflMI	CCANNNNNTGG	1 cut(s)	749
PkrI	GCNGC	4 cut(s)	1424, 2216, 2473, 3043
Ppu21I	YACGTR	1 cut(s)	1839
PpuMI	RGGWCCY	2 cut(s)	70, 1286
PscI	ACATGT	1 cut(s)	1999
PshAI	GACNNNNGTC	1 cut(s)	2313
PsiI	TTATAA	1 cut(s)	222
Psp5II	RGGWCCY	2 cut(s)	70, 1286
Psp6I	CCWGG	1 cut(s)	1927
PspEI	GGTNACC	1 cut(s)	1898
PspGI	CCWGG	1 cut(s)	1927
PspLI	CGTACG	1 cut(s)	1835
PspN4I	GGNNCC	1 cut(s)	1287
PspPI	GGNCC	6 cut(s)	70, 1230, 1286, 1842, 2212, 2454
PspPPI	RGGWCCY	2 cut(s)	70, 1286
PstI	CTGCAG	2 cut(s)	3108, 3213
PstNI	CAGNNNCTG	1 cut(s)	749
PsuI	RGATCY	6 cut(s)	652, 1270, 1313, 1882, 2494, 2537
PsyI	GACNNNGTC	1 cut(s)	1106
PvuII	CAGCTG	3 cut(s)	538, 1019, 2246
RsaI	GTAC	9 cut(s)	688, 1057, 1321, 1837, 1918, 1933, 2545, 2653, 3090
RsaNI	GTAC	9 cut(s)	687, 1056, 1320, 1836, 1917, 1932, 2544, 2652, 3089
RseI	CAYNNNNRTG	4 cut(s)	675, 681, 1806, 2418
SalI	GTCGAC	1 cut(s)	13
SatI	GCNGC	4 cut(s)	1423, 2215, 2472, 3042
Sau96I	GGNCC	6 cut(s)	70, 1230, 1286, 1842, 2212, 2454
ScaI	AGTACT	1 cut(s)	3090
ScrFI	CCNGG	1 cut(s)	1929
SduI	GDGCHC	1 cut(s)	994
SexAI	ACCWGGT	1 cut(s)	1927
SfcI	CTRYAG	2 cut(s)	3104, 3209
SgrDI	CGTCGACG	1 cut(s)	13
SinI	GGWCC	5 cut(s)	70, 1230, 1286, 1842, 2454
SmiMI	CAYNNNNRTG	4 cut(s)	675, 681, 1806, 2418
SmlI	CTYRAG	2 cut(s)	2847, 2929
SmoI	CTYRAG	2 cut(s)	2847, 2929
SsiI	CCGC	5 cut(s)	950, 983, 1603, 2215, 2944
SspI	AATATT	2 cut(s)	792, 1559
SspMI	CTAG	9 cut(s)	647, 656, 1265, 1274, 1361, 1380, 1877, 1992, 2498
StyD4I	CCNGG	1 cut(s)	1927
StyI	CCWWGG	7 cut(s)	105, 460, 1091, 1233, 1706, 2346, 2457
TaiI	ACGT	5 cut(s)	349, 1837, 1841, 1937, 2616
TaqI	TCGA	6 cut(s)	14, 1009, 1806, 3096, 3110, 3280
TaqII	GACCGA	1 cut(s)	1859
TatI	WGTACW	3 cut(s)	1055, 2651, 3088
TauI	GCSGC	1 cut(s)	2217
TfiI	GAWTC	9 cut(s)	478, 667, 709, 2646, 2726, 2775, 3176, 3203, 3386
TscAI	CASTG	6 cut(s)	458, 2116, 2307, 2661, 2680, 2887
TseFI	GTSAC	6 cut(s)	1433, 1898, 2048, 2660, 2900, 3237
TseI	GCWGC	3 cut(s)	1422, 2471, 3041
Tsp45I	GTSAC	6 cut(s)	1433, 1898, 2048, 2660, 2900, 3237
TspGWI	ACGGA	2 cut(s)	32, 797
TspRI	CASTG	6 cut(s)	458, 2116, 2307, 2661, 2680, 2887
Tth111I	GACNNNGTC	1 cut(s)	1106
Van91I	CCANNNNNTGG	1 cut(s)	749
VneI	GTGCAC	1 cut(s)	990
VpaK11BI	GGWCC	5 cut(s)	70, 1230, 1286, 1842, 2454
XapI	RAATTY	5 cut(s)	483, 524, 941, 2168, 3362
XbaI	TCTAGA	2 cut(s)	1264, 1876
XceI	RCATGY	3 cut(s)	1441, 2003, 2056
XmiI	GTMKAC	2 cut(s)	14, 601
XmnI	GAANNNNTTC	2 cut(s)	803, 2645
XspI	CTAG	9 cut(s)	647, 656, 1265, 1274, 1361, 1380, 1877, 1992, 2498
ZrmI	AGTACT	1 cut(s)	3090

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.