DNA ligase
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Myb_DNA-bind_3 | PF12776 | 17 - 114 | 1.8e-09 | Myb/SANT-like DNA-binding domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 246 |
| AatII | GACGTC | 1 cut(s) | 654 |
| AccI | GTMKAC | 1 cut(s) | 732 |
| AccII | CGCG | 1 cut(s) | 614 |
| AciI | CCGC | 1 cut(s) | 206 |
| AcsI | RAATTY | 1 cut(s) | 184 |
| AcyI | GRCGYC | 2 cut(s) | 626, 651 |
| AfaI | GTAC | 1 cut(s) | 142 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 579 |
| AflII | CTTAAG | 1 cut(s) | 233 |
| AgsI | TTSAA | 6 cut(s) | 62, 79, 133, 169, 196, 311 |
| AjnI | CCWGG | 1 cut(s) | 735 |
| AluBI | AGCT | 2 cut(s) | 407, 480 |
| AluI | AGCT | 2 cut(s) | 407, 480 |
| Alw26I | GTCTC | 2 cut(s) | 689, 727 |
| AoxI | GGCC | 1 cut(s) | 198 |
| ApoI | RAATTY | 1 cut(s) | 184 |
| AscI | GGCGCGCC | 1 cut(s) | 612 |
| AspLEI | GCGC | 2 cut(s) | 614, 616 |
| AspS9I | GGNCC | 2 cut(s) | 51, 334 |
| AsuHPI | GGTGA | 1 cut(s) | 23 |
| AsuNHI | GCTAGC | 1 cut(s) | 403 |
| AvaII | GGWCC | 2 cut(s) | 51, 334 |
| AxyI | CCTNAGG | 1 cut(s) | 522 |
| BanII | GRGCYC | 1 cut(s) | 670 |
| BccI | CCATC | 1 cut(s) | 711 |
| BciT130I | CCWGG | 1 cut(s) | 737 |
| BciVI | GTATCC | 1 cut(s) | 580 |
| BcoDI | GTCTC | 2 cut(s) | 689, 727 |
| BfaI | CTAG | 3 cut(s) | 102, 404, 760 |
| BfrI | CTTAAG | 1 cut(s) | 233 |
| BfuI | GTATCC | 1 cut(s) | 580 |
| BglII | AGATCT | 2 cut(s) | 499, 756 |
| Bme1390I | CCNGG | 1 cut(s) | 737 |
| Bme18I | GGWCC | 2 cut(s) | 51, 334 |
| BmgT120I | GGNCC | 2 cut(s) | 51, 334 |
| BmiI | GGNNCC | 2 cut(s) | 335, 453 |
| BmrFI | CCNGG | 1 cut(s) | 737 |
| BmsI | GCATC | 1 cut(s) | 717 |
| BmtI | GCTAGC | 1 cut(s) | 407 |
| BoxI | GACNNNNGTC | 1 cut(s) | 516 |
| BpmI | CTGGAG | 3 cut(s) | 391, 612, 622 |
| BpuEI | CTTGAG | 1 cut(s) | 524 |
| BsaHI | GRCGYC | 2 cut(s) | 626, 651 |
| BsaI | GGTCTC | 1 cut(s) | 689 |
| BsaJI | CCNNGG | 1 cut(s) | 573 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 579 |
| Bse118I | RCCGGY | 1 cut(s) | 622 |
| Bse1I | ACTGG | 1 cut(s) | 54 |
| Bse21I | CCTNAGG | 1 cut(s) | 522 |
| Bse3DI | GCAATG | 2 cut(s) | 585, 756 |
| BseBI | CCWGG | 1 cut(s) | 737 |
| BseDI | CCNNGG | 1 cut(s) | 573 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 579 |
| BseMI | GCAATG | 2 cut(s) | 585, 756 |
| BseMII | CTCAG | 3 cut(s) | 438, 536, 554 |
| BseNI | ACTGG | 1 cut(s) | 54 |
| BsePI | GCGCGC | 1 cut(s) | 612 |
| BsgI | GTGCAG | 1 cut(s) | 365 |
| Bsh1236I | CGCG | 1 cut(s) | 614 |
| BshFI | GGCC | 1 cut(s) | 200 |
| BsiSI | CCGG | 1 cut(s) | 623 |
| BslFI | GGGAC | 3 cut(s) | 347, 596, 662 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 579 |
| BsmAI | GTCTC | 2 cut(s) | 689, 727 |
| BsmBI | CGTCTC | 1 cut(s) | 727 |
| BsmFI | GGGAC | 3 cut(s) | 347, 596, 662 |
| BsmI | GAATGC | 1 cut(s) | 85 |
| BsnI | GGCC | 1 cut(s) | 200 |
| Bso31I | GGTCTC | 1 cut(s) | 689 |
| Bsp1286I | GDGCHC | 1 cut(s) | 670 |
| Bsp143I | GATC | 3 cut(s) | 424, 499, 756 |
| BspACI | CCGC | 1 cut(s) | 206 |
| BspANI | GGCC | 1 cut(s) | 200 |
| BspCNI | CTCAG | 3 cut(s) | 439, 535, 553 |
| BspFNI | CGCG | 1 cut(s) | 614 |
| BspLI | GGNNCC | 2 cut(s) | 335, 453 |
| BspOI | GCTAGC | 1 cut(s) | 407 |
| BspTI | CTTAAG | 1 cut(s) | 233 |
| BspTNI | GGTCTC | 1 cut(s) | 689 |
| BsrDI | GCAATG | 2 cut(s) | 585, 756 |
| BsrFI | RCCGGY | 1 cut(s) | 622 |
| BsrI | ACTGG | 1 cut(s) | 54 |
| BssAI | RCCGGY | 1 cut(s) | 622 |
| BssECI | CCNNGG | 1 cut(s) | 573 |
| BssHII | GCGCGC | 1 cut(s) | 612 |
| BssMI | GATC | 3 cut(s) | 424, 499, 756 |
| BssNI | GRCGYC | 2 cut(s) | 626, 651 |
| BssT1I | CCWWGG | 1 cut(s) | 573 |
| Bst2UI | CCWGG | 1 cut(s) | 737 |
| Bst4CI | ACNGT | 3 cut(s) | 92, 320, 700 |
| BstACI | GRCGYC | 2 cut(s) | 626, 651 |
| BstAFI | CTTAAG | 1 cut(s) | 233 |
| BstC8I | GCNNGC | 3 cut(s) | 405, 614, 624 |
| BstDEI | CTNAG | 4 cut(s) | 447, 496, 522, 540 |
| BstFNI | CGCG | 1 cut(s) | 614 |
| BstHHI | GCGC | 2 cut(s) | 614, 616 |
| BstKTI | GATC | 3 cut(s) | 427, 502, 759 |
| BstMAI | GTCTC | 2 cut(s) | 689, 727 |
| BstMBI | GATC | 3 cut(s) | 424, 499, 756 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 746 |
| BstNI | CCWGG | 1 cut(s) | 737 |
| BstNSI | RCATGY | 1 cut(s) | 164 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 516 |
| BstSCI | CCNGG | 1 cut(s) | 735 |
| BstUI | CGCG | 1 cut(s) | 614 |
| BstX2I | RGATCY | 2 cut(s) | 499, 756 |
| BstYI | RGATCY | 2 cut(s) | 499, 756 |
| Bsu36I | CCTNAGG | 1 cut(s) | 522 |
| BsuI | GTATCC | 1 cut(s) | 580 |
| BsuRI | GGCC | 1 cut(s) | 200 |
| BtgZI | GCGATG | 2 cut(s) | 127, 689 |
| BtsIMutI | CAGTG | 1 cut(s) | 97 |
| Cac8I | GCNNGC | 3 cut(s) | 405, 614, 624 |
| CfoI | GCGC | 2 cut(s) | 614, 616 |
| Cfr10I | RCCGGY | 1 cut(s) | 622 |
| Cfr13I | GGNCC | 2 cut(s) | 51, 334 |
| CseI | GACGC | 1 cut(s) | 615 |
| Csp6I | GTAC | 1 cut(s) | 141 |
| CviAII | CATG | 3 cut(s) | 161, 262, 285 |
| CviJI | RGCY | 8 cut(s) | 200, 369, 403, 407, 480, 531, 668, 740 |
| CviKI_1 | RGCY | 8 cut(s) | 200, 369, 403, 407, 480, 531, 668, 740 |
| CviQI | GTAC | 1 cut(s) | 141 |
| DdeI | CTNAG | 4 cut(s) | 447, 496, 522, 540 |
| DpnI | GATC | 3 cut(s) | 426, 501, 758 |
| DpnII | GATC | 3 cut(s) | 424, 499, 756 |
| Eco130I | CCWWGG | 1 cut(s) | 573 |
| Eco24I | GRGCYC | 1 cut(s) | 670 |
| Eco31I | GGTCTC | 1 cut(s) | 689 |
| Eco47I | GGWCC | 2 cut(s) | 51, 334 |
| Eco81I | CCTNAGG | 1 cut(s) | 522 |
| EcoRII | CCWGG | 1 cut(s) | 735 |
| EcoT14I | CCWWGG | 1 cut(s) | 573 |
| EcoT38I | GRGCYC | 1 cut(s) | 670 |
| ErhI | CCWWGG | 1 cut(s) | 573 |
| Esp3I | CGTCTC | 1 cut(s) | 727 |
| FaeI | CATG | 3 cut(s) | 164, 265, 288 |
| FaqI | GGGAC | 3 cut(s) | 347, 596, 662 |
| FatI | CATG | 3 cut(s) | 160, 261, 284 |
| FblI | GTMKAC | 1 cut(s) | 732 |
| FriOI | GRGCYC | 1 cut(s) | 670 |
| FspBI | CTAG | 3 cut(s) | 102, 404, 760 |
| GlaI | GCGC | 2 cut(s) | 613, 615 |
| GsuI | CTGGAG | 3 cut(s) | 391, 612, 622 |
| HaeIII | GGCC | 1 cut(s) | 200 |
| HapII | CCGG | 1 cut(s) | 623 |
| HgaI | GACGC | 1 cut(s) | 615 |
| HhaI | GCGC | 2 cut(s) | 614, 616 |
| Hin1I | GRCGYC | 2 cut(s) | 626, 651 |
| Hin1II | CATG | 3 cut(s) | 164, 265, 288 |
| Hin6I | GCGC | 2 cut(s) | 612, 614 |
| HinP1I | GCGC | 2 cut(s) | 612, 614 |
| HincII | GTYRAC | 2 cut(s) | 316, 733 |
| HindII | GTYRAC | 2 cut(s) | 316, 733 |
| HinfI | GANTC | 2 cut(s) | 68, 594 |
| HpaII | CCGG | 1 cut(s) | 623 |
| HphI | GGTGA | 1 cut(s) | 23 |
| Hpy166II | GTNNAC | 4 cut(s) | 107, 316, 469, 733 |
| Hpy188I | TCNGA | 3 cut(s) | 25, 543, 678 |
| Hpy188III | TCNNGA | 1 cut(s) | 503 |
| Hpy8I | GTNNAC | 4 cut(s) | 107, 316, 469, 733 |
| Hpy99I | CGWCG | 1 cut(s) | 631 |
| HpyAV | CCTTC | 2 cut(s) | 190, 232 |
| HpyCH4III | ACNGT | 3 cut(s) | 92, 320, 700 |
| HpyCH4IV | ACGT | 2 cut(s) | 143, 651 |
| HpyCH4V | TGCA | 3 cut(s) | 284, 346, 749 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 746 |
| HpyF3I | CTNAG | 4 cut(s) | 447, 496, 522, 540 |
| HpySE526I | ACGT | 2 cut(s) | 143, 651 |
| Hsp92I | GRCGYC | 2 cut(s) | 626, 651 |
| Hsp92II | CATG | 3 cut(s) | 164, 265, 288 |
| HspAI | GCGC | 2 cut(s) | 612, 614 |
| KroI | GCCGGC | 1 cut(s) | 622 |
| KroNI | GCCGGC | 1 cut(s) | 624 |
| Kzo9I | GATC | 3 cut(s) | 424, 499, 756 |
| LweI | GCATC | 1 cut(s) | 717 |
| MaeI | CTAG | 3 cut(s) | 102, 404, 760 |
| MaeII | ACGT | 2 cut(s) | 143, 651 |
| MaeIII | GTNAC | 2 cut(s) | 116, 144 |
| MalI | GATC | 3 cut(s) | 426, 501, 758 |
| MboI | GATC | 3 cut(s) | 424, 499, 756 |
| MboII | GAAGA | 2 cut(s) | 74, 77 |
| MflI | RGATCY | 2 cut(s) | 499, 756 |
| MhlI | GDGCHC | 1 cut(s) | 670 |
| MluCI | AATT | 5 cut(s) | 19, 184, 190, 221, 744 |
| MlyI | GAGTC | 1 cut(s) | 603 |
| MnlI | CCTC | 7 cut(s) | 27, 393, 442, 531, 602, 628, 639 |
| MreI | CGCCGGCG | 1 cut(s) | 622 |
| MroNI | GCCGGC | 1 cut(s) | 622 |
| MseI | TTAA | 5 cut(s) | 189, 213, 224, 234, 662 |
| MspCI | CTTAAG | 1 cut(s) | 233 |
| MspI | CCGG | 1 cut(s) | 623 |
| MspR9I | CCNGG | 1 cut(s) | 737 |
| Mva1269I | GAATGC | 1 cut(s) | 85 |
| MvaI | CCWGG | 1 cut(s) | 737 |
| MvnI | CGCG | 1 cut(s) | 614 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 746 |
| NaeI | GCCGGC | 1 cut(s) | 624 |
| NdeII | GATC | 3 cut(s) | 424, 499, 756 |
| NgoMIV | GCCGGC | 1 cut(s) | 622 |
| NheI | GCTAGC | 1 cut(s) | 403 |
| NlaIII | CATG | 3 cut(s) | 164, 265, 288 |
| NlaIV | GGNNCC | 2 cut(s) | 335, 453 |
| NmuCI | GTSAC | 1 cut(s) | 116 |
| NspI | RCATGY | 1 cut(s) | 164 |
| PalAI | GGCGCGCC | 1 cut(s) | 612 |
| PauI | GCGCGC | 1 cut(s) | 612 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 626, 717 |
| PctI | GAATGC | 1 cut(s) | 85 |
| PdiI | GCCGGC | 1 cut(s) | 624 |
| PfeI | GAWTC | 1 cut(s) | 68 |
| PleI | GAGTC | 1 cut(s) | 602 |
| PpsI | GAGTC | 1 cut(s) | 602 |
| PshAI | GACNNNNGTC | 1 cut(s) | 516 |
| PsiI | TTATAA | 1 cut(s) | 246 |
| Psp6I | CCWGG | 1 cut(s) | 735 |
| PspGI | CCWGG | 1 cut(s) | 735 |
| PspN4I | GGNNCC | 2 cut(s) | 335, 453 |
| PspPI | GGNCC | 2 cut(s) | 51, 334 |
| PsuI | RGATCY | 2 cut(s) | 499, 756 |
| PteI | GCGCGC | 1 cut(s) | 612 |
| RsaI | GTAC | 1 cut(s) | 142 |
| RsaNI | GTAC | 1 cut(s) | 141 |
| SalI | GTCGAC | 1 cut(s) | 731 |
| SaqAI | TTAA | 5 cut(s) | 189, 213, 224, 234, 662 |
| Sau3AI | GATC | 3 cut(s) | 424, 499, 756 |
| Sau96I | GGNCC | 2 cut(s) | 51, 334 |
| SchI | GAGTC | 1 cut(s) | 603 |
| ScrFI | CCNGG | 1 cut(s) | 737 |
| SduI | GDGCHC | 1 cut(s) | 670 |
| SetI | ASST | 9 cut(s) | 10, 146, 409, 453, 482, 528, 579, 654, 738 |
| SfaNI | GCATC | 1 cut(s) | 717 |
| SgrAI | CRCCGGYG | 1 cut(s) | 622 |
| SgsI | GGCGCGCC | 1 cut(s) | 612 |
| SinI | GGWCC | 2 cut(s) | 51, 334 |
| SmlI | CTYRAG | 2 cut(s) | 233, 503 |
| SmoI | CTYRAG | 2 cut(s) | 233, 503 |
| Sse9I | AATT | 5 cut(s) | 19, 184, 190, 221, 744 |
| SsiI | CCGC | 1 cut(s) | 206 |
| SspMI | CTAG | 3 cut(s) | 102, 404, 760 |
| StyD4I | CCNGG | 1 cut(s) | 735 |
| StyI | CCWWGG | 1 cut(s) | 573 |
| TaaI | ACNGT | 3 cut(s) | 92, 320, 700 |
| TaiI | ACGT | 2 cut(s) | 146, 654 |
| TaqI | TCGA | 2 cut(s) | 732, 742 |
| TasI | AATT | 5 cut(s) | 19, 184, 190, 221, 744 |
| TfiI | GAWTC | 1 cut(s) | 68 |
| Tru1I | TTAA | 5 cut(s) | 189, 213, 224, 234, 662 |
| Tru9I | TTAA | 5 cut(s) | 189, 213, 224, 234, 662 |
| TscAI | CASTG | 1 cut(s) | 97 |
| TseFI | GTSAC | 1 cut(s) | 116 |
| Tsp45I | GTSAC | 1 cut(s) | 116 |
| TspDTI | ATGAA | 1 cut(s) | 339 |
| TspGWI | ACGGA | 1 cut(s) | 658 |
| TspRI | CASTG | 1 cut(s) | 97 |
| Vha464I | CTTAAG | 1 cut(s) | 233 |
| VpaK11BI | GGWCC | 2 cut(s) | 51, 334 |
| XapI | RAATTY | 1 cut(s) | 184 |
| XceI | RCATGY | 1 cut(s) | 164 |
| XmiI | GTMKAC | 1 cut(s) | 732 |
| XspI | CTAG | 3 cut(s) | 102, 404, 760 |
| ZraI | GACGTC | 1 cut(s) | 652 |