Rmu_sc0002219.1_g000003
MYB Family

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002219.1
OG0000261
Physical Location & Seq
Forward (+)
10336 .. 11288
953 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002219.1_g000003.1.cds

Sequence Viewer

Length: 864 bp
atggaaagtggtgatgaaaatacagagcaagggaagtcaagacgtgtatggaccagctttgaagaagagtctttgttgaatgttcttgacggaattattgctagaggacaaaactgcgacactggcagtttcaaatctggtactttaatcaaaatagagaatgctttaaatcttttatgtcccaattccaatctgaaggcaagtccacatattgagtcaaagttgaagaaacttaagaaagattatagcacaatctatgacatgatgaacaagagtggatttgcatggaatgatatcaaaaagtgcattgaagttgatagtaatgaagtatgggatacgtatttgcagcacaacaaaaaggcaaagggatggagaaacaagaagtatccattatttgatagactagctaccatctttgggactgatcgtgctactgaaaatggtgctgaggtccctgctgatatgacggaggaccagagaaacaatgaagatgatataggcattgagaatgacataagccccatgtcaatgagcaaagatagcacgggacaatctcaagtcagtcagaaaaagaggaaaagaaatgatgaagataaaattatgcttgcattggataaattgtttgaagaatctggaaaaagaatgcaagcagtgattgatgccatagtgaaaggtaatgaagatagatctgatattgctaaggaacttaagaaaatgggactttctgttctagaccaaattgaggcattgaaaatcattttggataagccccaaaatatctttgtcttcatgtccttagatgatgaagtgagaaaagtgtatgtcgagaacttgcttgcgggaactgctaaaggatctacctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

287

Amino Acids

32.43

Weight (kDa)

5.4

Isoelectric Point (pI)

49.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000261)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18411 FvH4_1g22560 FvH4_1g24290 FvH4_1g24290 FvH4_1g24290 FvH4_1g29434 FvH4_2g04031 FvH4_2g04811 FvH4_2g07610 FvH4_2g09412 FvH4_3g15552 FvH4_3g30720 FvH4_4g05810 FvH4_4g09541 FvH4_4g15171 FvH4_6g09145 FvH4_6g49541 FvH4_7g00320 FvH4_7g11552
malus_domestica MD00G1072400.v1.1 MD01G1188100.v1.1 MD07G1132000.v1.1 MD08G1190700.v1.1 MD10G1011200.v1.1 MD14G1164100.v1.1 MD15G1289200.v1.1 MD15G1289300.v1.1 MD17G1245100.v1.1
prunus_persica Prupe.6G228600_v2.0.a1
pyrus_communis pycom01g07070 pycom02g06890 pycom02g06900 pycom02g13930 pycom04g07470 pycom04g11770 pycom04g21930 pycom05g08520 pycom06g04490 pycom06g09560 pycom07g03750 pycom08g08760 pycom08g13660 pycom09g11520 pycom09g14250 pycom09g14770 pycom10g00720 pycom10g01290 pycom10g10480 pycom10g15700 pycom12420g00130 pycom12g05380 pycom12g08750 pycom13g19010 pycom13g29080 pycom14g06210 pycom14g13680 pycom14g19850 pycom15g22070 pycom15g23440 pycom15g24950 pycom15g25280 pycom16g11100 pycom16g17080 pycom16g26310 pycom17g15650 pycom17g15670 pycom17g20370
rosa_chinensis RchiOBHm_Chr1g0373591 RchiOBHm_Chr2g0105551 RchiOBHm_Chr2g0106711 RchiOBHm_Chr2g0106721 RchiOBHm_Chr7g0219611
rosa_laevigata RLG00000013773 RLG00000017436 RLG00000017533
rosa_multiflora Rmu_co8001842.1_g000001 Rmu_co8158450.1_g000001 Rmu_sc0000516.1_g000067 Rmu_sc0000566.1_g000009 Rmu_sc0000965.1_g000025 Rmu_sc0001718.1_g000001 Rmu_sc0001719.1_g000020 Rmu_sc0001822.1_g000025 Rmu_sc0002219.1_g000003 Rmu_sc0002460.1_g000059 Rmu_sc0002757.1_g000001 Rmu_sc0002860.1_g000001 Rmu_sc0004531.1_g000001 Rmu_sc0005558.1_g000003 Rmu_sc0011218.1_g000001 Rmu_sc0011998.1_g000003 Rmu_sc0015560.1_g000002 Rmu_sc0015560.1_g000003
rosa_roxburghii Rroxscaffold_1G00004200 Rroxscaffold_1G00026570 Rroxscaffold_1G00040370 Rroxscaffold_1G00044120 Rroxscaffold_1G00049590 Rroxscaffold_1G00059030 Rroxscaffold_2G00108440 Rroxscaffold_2G00108850 Rroxscaffold_2G00130680 Rroxscaffold_2G00132980 Rroxscaffold_2G00136860 Rroxscaffold_3G00218610 Rroxscaffold_4G00309940 Rroxscaffold_6G00405560
rosa_rugosa Rorug02G0138000 Rorug02G0138100 Rorug02G0138100 Rorug06G0154000
rosa_samantha Rh1AG121500 Rh1CG116300 Rh2AG189000 Rh2AG509600 Rh2BG200200 Rh2CG194100 Rh2DG195300 Rh5AG114400 Rh5DG488800
rosa_wichuraiana Rw0G022020 Rw1G023650 Rw1G026380 Rw1G034750 Rw1G040770 Rw2G014870 Rw2G016560 Rw4G031190 Rw5G026570 Rw6G003020 Rw6G012060 Rw7G014300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 839
AclWI GGATC 1 cut(s) 862
AcuI CTGAAG 1 cut(s) 215
AfaI GTAC 1 cut(s) 142
AfiI CCNNNNNNNGG 2 cut(s) 417, 742
AflII CTTAAG 2 cut(s) 233, 707
AflIII ACRYGT 1 cut(s) 43
AgsI TTSAA 7 cut(s) 62, 79, 133, 226, 311, 626, 751
AjiI CACGTC 1 cut(s) 44
AjuI GAANNNNNNNTTGG 2 cut(s) 743, 775
AloI GAACNNNNNNTCC 2 cut(s) 711, 743
AluBI AGCT 2 cut(s) 57, 407
AluI AGCT 2 cut(s) 57, 407
AlwI GGATC 1 cut(s) 862
ApeKI GCWGC 1 cut(s) 346
AspS9I GGNCC 3 cut(s) 51, 451, 472
AsuHPI GGTGA 1 cut(s) 23
AvaII GGWCC 3 cut(s) 51, 451, 472
BbsI GAAGAC 1 cut(s) 778
BbvCI CCTCAGC 1 cut(s) 447
BbvI GCAGC 1 cut(s) 358
BccI CCATC 2 cut(s) 363, 419
BciVI GTATCC 2 cut(s) 328, 396
BfaI CTAG 4 cut(s) 102, 404, 731, 862
BfrI CTTAAG 2 cut(s) 233, 707
BfuI GTATCC 2 cut(s) 328, 396
BglII AGATCT 1 cut(s) 686
BisI GCNGC 1 cut(s) 347
BlsI GCNGC 1 cut(s) 348
Bme18I GGWCC 3 cut(s) 51, 451, 472
BmgBI CACGTC 1 cut(s) 44
BmgT120I GGNCC 3 cut(s) 51, 451, 472
BmiI GGNNCC 1 cut(s) 453
BmsI GCATC 1 cut(s) 649
BpiI GAAGAC 1 cut(s) 778
Bpu10I CCTNAGC 2 cut(s) 447, 699
BpuEI CTTGAG 1 cut(s) 540
BsaAI YACGTR 1 cut(s) 339
Bsc4I CCNNNNNNNGG 2 cut(s) 417, 742
Bse1I ACTGG 1 cut(s) 127
BseGI GGATG 1 cut(s) 374
BseLI CCNNNNNNNGG 2 cut(s) 417, 742
BseMII CTCAG 1 cut(s) 438
BseNI ACTGG 1 cut(s) 127
BseXI GCAGC 1 cut(s) 358
BslFI GGGAC 5 cut(s) 165, 433, 437, 561, 732
BslI CCNNNNNNNGG 2 cut(s) 417, 742
BsmFI GGGAC 5 cut(s) 165, 433, 437, 561, 732
BsmI GAATGC 2 cut(s) 166, 648
Bsp143I GATC 3 cut(s) 424, 686, 854
BspACI CCGC 1 cut(s) 839
BspCNI CTCAG 1 cut(s) 439
BspLI GGNNCC 1 cut(s) 453
BspPI GGATC 1 cut(s) 862
BspTI CTTAAG 2 cut(s) 233, 707
BsrI ACTGG 1 cut(s) 127
BssMI GATC 3 cut(s) 424, 686, 854
Bst6I CTCTTC 1 cut(s) 60
BstAFI CTTAAG 2 cut(s) 233, 707
BstBAI YACGTR 1 cut(s) 339
BstC8I GCNNGC 3 cut(s) 606, 648, 837
BstDEI CTNAG 3 cut(s) 447, 699, 796
BstF5I GGATG 1 cut(s) 374
BstKTI GATC 3 cut(s) 427, 689, 857
BstMBI GATC 3 cut(s) 424, 686, 854
BstMWI GCNNNNNNNGC 3 cut(s) 123, 540, 845
BstSNI TACGTA 1 cut(s) 339
BstV1I GCAGC 1 cut(s) 358
BstV2I GAAGAC 1 cut(s) 778
BstX2I RGATCY 2 cut(s) 686, 854
BstYI RGATCY 2 cut(s) 686, 854
BsuI GTATCC 2 cut(s) 328, 396
BtrI CACGTC 1 cut(s) 44
BtsCI GGATG 1 cut(s) 374
BtsI GCAGTG 1 cut(s) 657
BtsIMutI CAGTG 2 cut(s) 120, 657
Cac8I GCNNGC 3 cut(s) 606, 648, 837
Cfr13I GGNCC 3 cut(s) 51, 451, 472
Csp6I GTAC 1 cut(s) 141
CviAII CATG 4 cut(s) 262, 285, 523, 790
CviJI RGCY 4 cut(s) 57, 407, 519, 769
CviKI_1 RGCY 4 cut(s) 57, 407, 519, 769
CviQI GTAC 1 cut(s) 141
DdeI CTNAG 3 cut(s) 447, 699, 796
DpnI GATC 3 cut(s) 426, 688, 856
DpnII GATC 3 cut(s) 424, 686, 854
DraI TTTAAA 1 cut(s) 168
Eam1104I CTCTTC 1 cut(s) 60
EarI CTCTTC 1 cut(s) 60
Eco105I TACGTA 1 cut(s) 339
Eco32I GATATC 1 cut(s) 295
Eco47I GGWCC 3 cut(s) 51, 451, 472
Eco57I CTGAAG 1 cut(s) 215
EcoO109I RGGNCCY 1 cut(s) 451
EcoRV GATATC 1 cut(s) 295
FaeI CATG 4 cut(s) 265, 288, 526, 793
FaqI GGGAC 5 cut(s) 165, 433, 437, 561, 732
FatI CATG 4 cut(s) 261, 284, 522, 789
FauI CCCGC 1 cut(s) 832
Fnu4HI GCNGC 1 cut(s) 347
FokI GGATG 1 cut(s) 381
Fsp4HI GCNGC 1 cut(s) 347
FspBI CTAG 4 cut(s) 102, 404, 731, 862
GluI GCNGC 1 cut(s) 347
Hin1II CATG 4 cut(s) 265, 288, 526, 793
HinfI GANTC 3 cut(s) 68, 215, 629
HphI GGTGA 1 cut(s) 23
Hpy166II GTNNAC 1 cut(s) 206
Hpy188I TCNGA 3 cut(s) 195, 567, 691
Hpy188III TCNNGA 5 cut(s) 39, 86, 633, 731, 826
Hpy8I GTNNAC 1 cut(s) 206
HpyAV CCTTC 1 cut(s) 190
HpyCH4IV ACGT 2 cut(s) 43, 338
HpyCH4V TGCA 5 cut(s) 284, 306, 346, 608, 646
HpyF10VI GCNNNNNNNGC 3 cut(s) 123, 540, 845
HpyF3I CTNAG 3 cut(s) 447, 699, 796
HpySE526I ACGT 2 cut(s) 43, 338
Hsp92II CATG 4 cut(s) 265, 288, 526, 793
Kzo9I GATC 3 cut(s) 424, 686, 854
LpnPI CCDG 6 cut(s) 67, 108, 123, 468, 488, 618
Lsp1109I GCAGC 1 cut(s) 358
LweI GCATC 1 cut(s) 649
MaeI CTAG 4 cut(s) 102, 404, 731, 862
MaeII ACGT 2 cut(s) 43, 338
MalI GATC 3 cut(s) 426, 688, 856
MboI GATC 3 cut(s) 424, 686, 854
MboII GAAGA 8 cut(s) 74, 77, 238, 500, 602, 638, 692, 778
MflI RGATCY 2 cut(s) 686, 854
MluCI AATT 5 cut(s) 93, 184, 597, 617, 738
MlyI GAGTC 2 cut(s) 77, 224
MnlI CCTC 5 cut(s) 98, 442, 463, 567, 736
MseI TTAA 4 cut(s) 146, 167, 234, 708
MslI CAYNNNNRTG 1 cut(s) 527
MspCI CTTAAG 2 cut(s) 233, 707
Mva1269I GAATGC 2 cut(s) 166, 648
MwoI GCNNNNNNNGC 3 cut(s) 123, 540, 845
NdeII GATC 3 cut(s) 424, 686, 854
NlaIII CATG 4 cut(s) 265, 288, 526, 793
NlaIV GGNNCC 1 cut(s) 453
PctI GAATGC 2 cut(s) 166, 648
PfeI GAWTC 1 cut(s) 629
PkrI GCNGC 1 cut(s) 348
PleI GAGTC 2 cut(s) 76, 223
PpsI GAGTC 2 cut(s) 76, 223
Ppu21I YACGTR 1 cut(s) 339
PpuMI RGGWCCY 1 cut(s) 451
Psp5II RGGWCCY 1 cut(s) 451
PspN4I GGNNCC 1 cut(s) 453
PspPI GGNCC 3 cut(s) 51, 451, 472
PspPPI RGGWCCY 1 cut(s) 451
PsuI RGATCY 2 cut(s) 686, 854
RsaI GTAC 1 cut(s) 142
RsaNI GTAC 1 cut(s) 141
RseI CAYNNNNRTG 1 cut(s) 527
SaqAI TTAA 4 cut(s) 146, 167, 234, 708
SatI GCNGC 1 cut(s) 347
Sau3AI GATC 3 cut(s) 424, 686, 854
Sau96I GGNCC 3 cut(s) 51, 451, 472
SchI GAGTC 2 cut(s) 77, 224
SetI ASST 7 cut(s) 46, 59, 341, 409, 453, 676, 863
SfaNI GCATC 1 cut(s) 649
SinI GGWCC 3 cut(s) 51, 451, 472
SmiMI CAYNNNNRTG 1 cut(s) 527
SmlI CTYRAG 3 cut(s) 233, 555, 707
SmoI CTYRAG 3 cut(s) 233, 555, 707
SnaBI TACGTA 1 cut(s) 339
Sse9I AATT 5 cut(s) 93, 184, 597, 617, 738
SsiI CCGC 1 cut(s) 839
SspMI CTAG 4 cut(s) 102, 404, 731, 862
TaiI ACGT 2 cut(s) 46, 341
TaqI TCGA 1 cut(s) 825
TasI AATT 5 cut(s) 93, 184, 597, 617, 738
TfiI GAWTC 1 cut(s) 629
Tru1I TTAA 4 cut(s) 146, 167, 234, 708
Tru9I TTAA 4 cut(s) 146, 167, 234, 708
TscAI CASTG 2 cut(s) 127, 657
TseI GCWGC 1 cut(s) 346
TspDTI ATGAA 8 cut(s) 30, 281, 339, 501, 603, 693, 778, 819
TspGWI ACGGA 2 cut(s) 105, 482
TspRI CASTG 2 cut(s) 127, 657
Vha464I CTTAAG 2 cut(s) 233, 707
VpaK11BI GGWCC 3 cut(s) 51, 451, 472
XbaI TCTAGA 1 cut(s) 730
XspI CTAG 4 cut(s) 102, 404, 731, 862
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.