pycom06g04490
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0000261
Physical Location & Seq
Reverse (-)
5726014 .. 5726241
228 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g04490.1

Sequence Viewer

Length: 228 bp
ATGGTTGCTGATGGTGTTAGCTGTGAGACCGGCAATTTTAAGATTGGTACTTTTGTAATGGTTGCCTCCAAGATGAGAGAAAAGATTTCTAGCATTAATATAGAGCCGAAGCATATACAAAACAAACTGAAGCATCTAAAAGAAAAGTATTCATCTGCATATGACATGATGAATACCTTTGGATTTGGTTGGGATGACAAGAAAAAAATGTGTTGTTGTGGATCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

76

Amino Acids

8.47

Weight (kDa)

8.96

Isoelectric Point (pI)

41.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_3 PF12776 10 - 71 3.3e-06 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000261)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18411 FvH4_1g22560 FvH4_1g24290 FvH4_1g24290 FvH4_1g24290 FvH4_1g29434 FvH4_2g04031 FvH4_2g04811 FvH4_2g07610 FvH4_2g09412 FvH4_3g15552 FvH4_3g30720 FvH4_4g05810 FvH4_4g09541 FvH4_4g15171 FvH4_6g09145 FvH4_6g49541 FvH4_7g00320 FvH4_7g11552
malus_domestica MD00G1072400.v1.1 MD01G1188100.v1.1 MD07G1132000.v1.1 MD08G1190700.v1.1 MD10G1011200.v1.1 MD14G1164100.v1.1 MD15G1289200.v1.1 MD15G1289300.v1.1 MD17G1245100.v1.1
prunus_persica Prupe.6G228600_v2.0.a1
pyrus_communis pycom01g07070 pycom02g06890 pycom02g06900 pycom02g13930 pycom04g07470 pycom04g11770 pycom04g21930 pycom05g08520 pycom06g04490 pycom06g09560 pycom07g03750 pycom08g08760 pycom08g13660 pycom09g11520 pycom09g14250 pycom09g14770 pycom10g00720 pycom10g01290 pycom10g10480 pycom10g15700 pycom12420g00130 pycom12g05380 pycom12g08750 pycom13g19010 pycom13g29080 pycom14g06210 pycom14g13680 pycom14g19850 pycom15g22070 pycom15g23440 pycom15g24950 pycom15g25280 pycom16g11100 pycom16g17080 pycom16g26310 pycom17g15650 pycom17g15670 pycom17g20370
rosa_chinensis RchiOBHm_Chr1g0373591 RchiOBHm_Chr2g0105551 RchiOBHm_Chr2g0106711 RchiOBHm_Chr2g0106721 RchiOBHm_Chr7g0219611
rosa_laevigata RLG00000013773 RLG00000017436 RLG00000017533
rosa_multiflora Rmu_co8001842.1_g000001 Rmu_co8158450.1_g000001 Rmu_sc0000516.1_g000067 Rmu_sc0000566.1_g000009 Rmu_sc0000965.1_g000025 Rmu_sc0001718.1_g000001 Rmu_sc0001719.1_g000020 Rmu_sc0001822.1_g000025 Rmu_sc0002219.1_g000003 Rmu_sc0002460.1_g000059 Rmu_sc0002757.1_g000001 Rmu_sc0002860.1_g000001 Rmu_sc0004531.1_g000001 Rmu_sc0005558.1_g000003 Rmu_sc0011218.1_g000001 Rmu_sc0011998.1_g000003 Rmu_sc0015560.1_g000002 Rmu_sc0015560.1_g000003
rosa_roxburghii Rroxscaffold_1G00004200 Rroxscaffold_1G00026570 Rroxscaffold_1G00040370 Rroxscaffold_1G00044120 Rroxscaffold_1G00049590 Rroxscaffold_1G00059030 Rroxscaffold_2G00108440 Rroxscaffold_2G00108850 Rroxscaffold_2G00130680 Rroxscaffold_2G00132980 Rroxscaffold_2G00136860 Rroxscaffold_3G00218610 Rroxscaffold_4G00309940 Rroxscaffold_6G00405560
rosa_rugosa Rorug02G0138000 Rorug02G0138100 Rorug02G0138100 Rorug06G0154000
rosa_samantha Rh1AG121500 Rh1CG116300 Rh2AG189000 Rh2AG509600 Rh2BG200200 Rh2CG194100 Rh2DG195300 Rh5AG114400 Rh5DG488800
rosa_wichuraiana Rw0G022020 Rw1G023650 Rw1G026380 Rw1G034750 Rw1G040770 Rw2G014870 Rw2G016560 Rw4G031190 Rw5G026570 Rw6G003020 Rw6G012060 Rw7G014300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 149
AfaI GTAC 1 cut(s) 49
AluBI AGCT 1 cut(s) 21
AluI AGCT 1 cut(s) 21
Alw26I GTCTC 1 cut(s) 20
AseI ATTAAT 1 cut(s) 96
BaeI ACNNNNGTAYC 2 cut(s) 39, 72
BccI CCATC 1 cut(s) 5
BcoDI GTCTC 1 cut(s) 20
BfaI CTAG 1 cut(s) 90
BmsI GCATC 1 cut(s) 142
BsaI GGTCTC 1 cut(s) 20
Bse118I RCCGGY 1 cut(s) 29
BseGI GGATG 1 cut(s) 199
BsiSI CCGG 1 cut(s) 30
BsmAI GTCTC 1 cut(s) 20
Bso31I GGTCTC 1 cut(s) 20
Bsp143I GATC 1 cut(s) 221
BspTNI GGTCTC 1 cut(s) 20
BsrFI RCCGGY 1 cut(s) 29
BssAI RCCGGY 1 cut(s) 29
BssMI GATC 1 cut(s) 221
BstF5I GGATG 1 cut(s) 199
BstKTI GATC 1 cut(s) 224
BstMAI GTCTC 1 cut(s) 20
BstMBI GATC 1 cut(s) 221
BtsCI GGATG 1 cut(s) 199
Cfr10I RCCGGY 1 cut(s) 29
Csp6I GTAC 1 cut(s) 48
CviAII CATG 1 cut(s) 166
CviJI RGCY 2 cut(s) 21, 106
CviKI_1 RGCY 2 cut(s) 21, 106
CviQI GTAC 1 cut(s) 48
DpnI GATC 1 cut(s) 223
DpnII GATC 1 cut(s) 221
Eco31I GGTCTC 1 cut(s) 20
Eco57I CTGAAG 1 cut(s) 149
FaeI CATG 1 cut(s) 169
FaiI YATR 6 cut(s) 101, 114, 116, 160, 162, 167
FatI CATG 1 cut(s) 165
FauNDI CATATG 1 cut(s) 160
FokI GGATG 1 cut(s) 206
FspBI CTAG 1 cut(s) 90
HapII CCGG 1 cut(s) 30
Hin1II CATG 1 cut(s) 169
HpaII CCGG 1 cut(s) 30
Hpy188III TCNNGA 1 cut(s) 225
HpyCH4V TGCA 1 cut(s) 158
Hsp92II CATG 1 cut(s) 169
Kzo9I GATC 1 cut(s) 221
LpnPI CCDG 1 cut(s) 43
LweI GCATC 1 cut(s) 142
MaeI CTAG 1 cut(s) 90
MalI GATC 1 cut(s) 223
MboI GATC 1 cut(s) 221
MluCI AATT 1 cut(s) 34
MnlI CCTC 1 cut(s) 76
MseI TTAA 2 cut(s) 39, 96
MspI CCGG 1 cut(s) 30
NdeI CATATG 1 cut(s) 160
NdeII GATC 1 cut(s) 221
NlaIII CATG 1 cut(s) 169
PshBI ATTAAT 1 cut(s) 96
RsaI GTAC 1 cut(s) 49
RsaNI GTAC 1 cut(s) 48
SaqAI TTAA 2 cut(s) 39, 96
Sau3AI GATC 1 cut(s) 221
SetI ASST 2 cut(s) 23, 179
SfaNI GCATC 1 cut(s) 142
SgeI CNNG 5 cut(s) 42, 82, 102, 178, 211
Sse9I AATT 1 cut(s) 34
SspMI CTAG 1 cut(s) 90
TasI AATT 1 cut(s) 34
Tru1I TTAA 2 cut(s) 39, 96
Tru9I TTAA 2 cut(s) 39, 96
TspDTI ATGAA 2 cut(s) 141, 185
VspI ATTAAT 1 cut(s) 96
XspI CTAG 1 cut(s) 90
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.