Rroxscaffold_2G00132980

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000261
Physical Location & Seq
Reverse (-)
70061923 .. 70077262
15340 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00132980.1

Sequence Viewer

Length: 714 bp
ATGGATGTGAACTATTCACATGTCTCTTCAAGGACCTTGTATGTGTACAATATTGTTGCAATGTTGAATAAGAGGAGAGTTGTTCAAAACCTCTTCGAGACTTTTGAAATAAATAGAATGGGTGGAGTGAAATGTCCTAGACTCCTAGTTATATGCTCAGATCTGTTCTTGCCATATATAGTCCAGAAACCTAATTTAGCTGGAATAAAGTGTGTAGAAGCAGACCAACTATCCACTGCTAAATCTAAGTCCATTTCTAAATTCGAGTCTACAAGCACGAGTAGGAGGAGGACAAGAGAGGATGATGATAACATAGTTCGTAGCTTAGACAAGTTTGCTACAACATTCAAAGAAGTGATGCAGACTTCAAATGAGCAGATTCGCCTTCTTGTTGAATGCTTGCAGCCAAAAGGTACCAAAAAAGATGAGAGGAAGCTGAGAAATCATTTGTTATGCGAAGCTGAGGTATGCACCAACAAATATGAGTCTCAAGCTATATTTTGTAAGGAGCCATTCTTCAATGGACATGATAACTACGATCAGCTAGTGAAACTAGCAAAGAAAGAAGAAGAGAATAAGAATACGGGGATAGACAAGAAAGAGGAAGAGGTAGAAGGGTGCTTGGTTTGTTGCAGAGATTTAGAGAAGGAAGAACTGAAGAAGGAAGAAGAGAAGAAAAAATACAGATGGATCGATAAGGAAGAGGAAGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

237

Amino Acids

27.72

Weight (kDa)

7.46

Isoelectric Point (pI)

52.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000261)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18411 FvH4_1g22560 FvH4_1g24290 FvH4_1g24290 FvH4_1g24290 FvH4_1g29434 FvH4_2g04031 FvH4_2g04811 FvH4_2g07610 FvH4_2g09412 FvH4_3g15552 FvH4_3g30720 FvH4_4g05810 FvH4_4g09541 FvH4_4g15171 FvH4_6g09145 FvH4_6g49541 FvH4_7g00320 FvH4_7g11552
malus_domestica MD00G1072400.v1.1 MD01G1188100.v1.1 MD07G1132000.v1.1 MD08G1190700.v1.1 MD10G1011200.v1.1 MD14G1164100.v1.1 MD15G1289200.v1.1 MD15G1289300.v1.1 MD17G1245100.v1.1
prunus_persica Prupe.6G228600_v2.0.a1
pyrus_communis pycom01g07070 pycom02g06890 pycom02g06900 pycom02g13930 pycom04g07470 pycom04g11770 pycom04g21930 pycom05g08520 pycom06g04490 pycom06g09560 pycom07g03750 pycom08g08760 pycom08g13660 pycom09g11520 pycom09g14250 pycom09g14770 pycom10g00720 pycom10g01290 pycom10g10480 pycom10g15700 pycom12420g00130 pycom12g05380 pycom12g08750 pycom13g19010 pycom13g29080 pycom14g06210 pycom14g13680 pycom14g19850 pycom15g22070 pycom15g23440 pycom15g24950 pycom15g25280 pycom16g11100 pycom16g17080 pycom16g26310 pycom17g15650 pycom17g15670 pycom17g20370
rosa_chinensis RchiOBHm_Chr1g0373591 RchiOBHm_Chr2g0105551 RchiOBHm_Chr2g0106711 RchiOBHm_Chr2g0106721 RchiOBHm_Chr7g0219611
rosa_laevigata RLG00000013773 RLG00000017436 RLG00000017533
rosa_multiflora Rmu_co8001842.1_g000001 Rmu_co8158450.1_g000001 Rmu_sc0000516.1_g000067 Rmu_sc0000566.1_g000009 Rmu_sc0000965.1_g000025 Rmu_sc0001718.1_g000001 Rmu_sc0001719.1_g000020 Rmu_sc0001822.1_g000025 Rmu_sc0002219.1_g000003 Rmu_sc0002460.1_g000059 Rmu_sc0002757.1_g000001 Rmu_sc0002860.1_g000001 Rmu_sc0004531.1_g000001 Rmu_sc0005558.1_g000003 Rmu_sc0011218.1_g000001 Rmu_sc0011998.1_g000003 Rmu_sc0015560.1_g000002 Rmu_sc0015560.1_g000003
rosa_roxburghii Rroxscaffold_1G00004200 Rroxscaffold_1G00026570 Rroxscaffold_1G00040370 Rroxscaffold_1G00044120 Rroxscaffold_1G00049590 Rroxscaffold_1G00059030 Rroxscaffold_2G00108440 Rroxscaffold_2G00108850 Rroxscaffold_2G00130680 Rroxscaffold_2G00132980 Rroxscaffold_2G00136860 Rroxscaffold_3G00218610 Rroxscaffold_4G00309940 Rroxscaffold_6G00405560
rosa_rugosa Rorug02G0138000 Rorug02G0138100 Rorug02G0138100 Rorug06G0154000
rosa_samantha Rh1AG121500 Rh1CG116300 Rh2AG189000 Rh2AG509600 Rh2BG200200 Rh2CG194100 Rh2DG195300 Rh5AG114400 Rh5DG488800
rosa_wichuraiana Rw0G022020 Rw1G023650 Rw1G026380 Rw1G034750 Rw1G040770 Rw2G014870 Rw2G016560 Rw4G031190 Rw5G026570 Rw6G003020 Rw6G012060 Rw7G014300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 413
AccB1I GGYRCC 1 cut(s) 413
AccI GTMKAC 1 cut(s) 269
AclWI GGATC 1 cut(s) 698
AcsI RAATTY 1 cut(s) 260
AcuI CTGAAG 1 cut(s) 677
AfaI GTAC 2 cut(s) 47, 415
AflIII ACRYGT 1 cut(s) 19
AgsI TTSAA 8 cut(s) 30, 67, 86, 107, 349, 369, 395, 520
AluBI AGCT 6 cut(s) 200, 324, 436, 461, 494, 544
AluI AGCT 6 cut(s) 200, 324, 436, 461, 494, 544
Alw26I GTCTC 3 cut(s) 28, 92, 492
AlwI GGATC 1 cut(s) 698
ApeKI GCWGC 1 cut(s) 403
ApoI RAATTY 1 cut(s) 260
Asp718I GGTACC 1 cut(s) 413
AspS9I GGNCC 1 cut(s) 33
AvaII GGWCC 1 cut(s) 33
BanI GGYRCC 1 cut(s) 413
BarI GAAGNNNNNNTAC 2 cut(s) 665, 697
BauI CACGAG 1 cut(s) 277
BbvCI CCTCAGC 1 cut(s) 462
BbvI GCAGC 1 cut(s) 415
BccI CCATC 1 cut(s) 681
BcoDI GTCTC 3 cut(s) 28, 92, 492
BfaI CTAG 4 cut(s) 138, 146, 545, 554
BglII AGATCT 1 cut(s) 160
BisI GCNGC 1 cut(s) 404
BlsI GCNGC 1 cut(s) 405
Bme18I GGWCC 1 cut(s) 33
BmgT120I GGNCC 1 cut(s) 33
BmiI GGNNCC 2 cut(s) 415, 510
BmsI GCATC 1 cut(s) 348
Bpu10I CCTNAGC 1 cut(s) 462
BpuEI CTTGAG 1 cut(s) 474
Bsa29I ATCGAT 1 cut(s) 693
Bse3DI GCAATG 1 cut(s) 66
BseCI ATCGAT 1 cut(s) 693
BseGI GGATG 2 cut(s) 10, 307
BseMI GCAATG 1 cut(s) 66
BseMII CTCAG 3 cut(s) 171, 428, 453
BseRI GAGGAG 2 cut(s) 88, 301
BseXI GCAGC 1 cut(s) 415
BshNI GGYRCC 1 cut(s) 413
BshVI ATCGAT 1 cut(s) 693
BsmAI GTCTC 3 cut(s) 28, 92, 492
BsmI GAATGC 1 cut(s) 401
Bsp1407I TGTACA 1 cut(s) 45
Bsp143I GATC 3 cut(s) 160, 538, 690
BspCNI CTCAG 3 cut(s) 170, 429, 454
BspDI ATCGAT 1 cut(s) 693
BspLI GGNNCC 2 cut(s) 415, 510
BspPI GGATC 1 cut(s) 698
BspT107I GGYRCC 1 cut(s) 413
BsrDI GCAATG 1 cut(s) 66
BsrGI TGTACA 1 cut(s) 45
BssMI GATC 3 cut(s) 160, 538, 690
BssSI CACGAG 1 cut(s) 277
Bst2BI CACGAG 1 cut(s) 277
Bst6I CTCTTC 6 cut(s) 31, 98, 564, 600, 663, 696
BstAUI TGTACA 1 cut(s) 45
BstC8I GCNNGC 1 cut(s) 401
BstDEI CTNAG 5 cut(s) 157, 246, 325, 437, 462
BstF5I GGATG 2 cut(s) 10, 307
BstKTI GATC 3 cut(s) 163, 541, 693
BstMAI GTCTC 3 cut(s) 28, 92, 492
BstMBI GATC 3 cut(s) 160, 538, 690
BstNSI RCATGY 1 cut(s) 23
BstV1I GCAGC 1 cut(s) 415
BstX2I RGATCY 1 cut(s) 160
BstYI RGATCY 1 cut(s) 160
Bsu15I ATCGAT 1 cut(s) 693
BsuTUI ATCGAT 1 cut(s) 693
BtsCI GGATG 2 cut(s) 10, 307
BtsI GCAGTG 1 cut(s) 234
BtsIMutI CAGTG 1 cut(s) 234
Cac8I GCNNGC 1 cut(s) 401
Cfr13I GGNCC 1 cut(s) 33
ClaI ATCGAT 1 cut(s) 693
Csp6I GTAC 2 cut(s) 46, 414
CviAII CATG 2 cut(s) 20, 527
CviJI RGCY 8 cut(s) 200, 324, 406, 436, 461, 494, 511, 544
CviKI_1 RGCY 8 cut(s) 200, 324, 406, 436, 461, 494, 511, 544
CviQI GTAC 2 cut(s) 46, 414
DdeI CTNAG 5 cut(s) 157, 246, 325, 437, 462
DpnI GATC 3 cut(s) 162, 540, 692
DpnII GATC 3 cut(s) 160, 538, 690
Eam1104I CTCTTC 6 cut(s) 31, 98, 564, 600, 663, 696
EarI CTCTTC 6 cut(s) 31, 98, 564, 600, 663, 696
Eco47I GGWCC 1 cut(s) 33
Eco57I CTGAAG 1 cut(s) 677
EcoO109I RGGNCCY 1 cut(s) 33
FaeI CATG 2 cut(s) 23, 530
FatI CATG 2 cut(s) 19, 526
FblI GTMKAC 1 cut(s) 269
Fnu4HI GCNGC 1 cut(s) 404
FokI GGATG 2 cut(s) 17, 314
Fsp4HI GCNGC 1 cut(s) 404
FspBI CTAG 4 cut(s) 138, 146, 545, 554
GluI GCNGC 1 cut(s) 404
Hin1II CATG 2 cut(s) 23, 530
HinfI GANTC 4 cut(s) 141, 266, 379, 485
Hpy166II GTNNAC 3 cut(s) 10, 46, 270
Hpy188I TCNGA 1 cut(s) 160
Hpy188III TCNNGA 2 cut(s) 97, 184
Hpy8I GTNNAC 3 cut(s) 10, 46, 270
HpyAV CCTTC 4 cut(s) 395, 608, 640, 655
HpyCH4V TGCA 5 cut(s) 59, 361, 403, 471, 633
HpyF3I CTNAG 5 cut(s) 157, 246, 325, 437, 462
Hsp92II CATG 2 cut(s) 23, 530
KpnI GGTACC 1 cut(s) 417
Kzo9I GATC 3 cut(s) 160, 538, 690
LmnI GCTCC 1 cut(s) 508
LpnPI CCDG 2 cut(s) 186, 197
Lsp1109I GCAGC 1 cut(s) 415
LweI GCATC 1 cut(s) 348
MaeI CTAG 4 cut(s) 138, 146, 545, 554
MalI GATC 3 cut(s) 162, 540, 692
MboI GATC 3 cut(s) 160, 538, 690
MflI RGATCY 1 cut(s) 160
MluCI AATT 2 cut(s) 193, 260
MlyI GAGTC 3 cut(s) 135, 275, 494
Mva1269I GAATGC 1 cut(s) 401
NdeII GATC 3 cut(s) 160, 538, 690
NlaIII CATG 2 cut(s) 23, 530
NlaIV GGNNCC 2 cut(s) 415, 510
NspI RCATGY 1 cut(s) 23
PciI ACATGT 1 cut(s) 19
PctI GAATGC 1 cut(s) 401
PfeI GAWTC 1 cut(s) 379
PkrI GCNGC 1 cut(s) 405
PleI GAGTC 3 cut(s) 135, 274, 493
PpsI GAGTC 3 cut(s) 135, 274, 493
PpuMI RGGWCCY 1 cut(s) 33
PscI ACATGT 1 cut(s) 19
Psp5II RGGWCCY 1 cut(s) 33
PspN4I GGNNCC 2 cut(s) 415, 510
PspPI GGNCC 1 cut(s) 33
PspPPI RGGWCCY 1 cut(s) 33
PsuI RGATCY 1 cut(s) 160
RsaI GTAC 2 cut(s) 47, 415
RsaNI GTAC 2 cut(s) 46, 414
SatI GCNGC 1 cut(s) 404
Sau3AI GATC 3 cut(s) 160, 538, 690
Sau96I GGNCC 1 cut(s) 33
SchI GAGTC 3 cut(s) 135, 275, 494
SfaNI GCATC 1 cut(s) 348
SinI GGWCC 1 cut(s) 33
SmlI CTYRAG 1 cut(s) 489
SmoI CTYRAG 1 cut(s) 489
Sse9I AATT 2 cut(s) 193, 260
SspI AATATT 1 cut(s) 52
SspMI CTAG 4 cut(s) 138, 146, 545, 554
TaqI TCGA 3 cut(s) 96, 264, 693
TasI AATT 2 cut(s) 193, 260
TatI WGTACW 1 cut(s) 45
TfiI GAWTC 1 cut(s) 379
TscAI CASTG 1 cut(s) 241
TseI GCWGC 1 cut(s) 403
TspRI CASTG 1 cut(s) 241
VpaK11BI GGWCC 1 cut(s) 33
XapI RAATTY 1 cut(s) 260
XceI RCATGY 1 cut(s) 23
XmiI GTMKAC 1 cut(s) 269
XspI CTAG 4 cut(s) 138, 146, 545, 554
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.