pycom04g21930
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0000261
Physical Location & Seq
Reverse (-)
22889869 .. 22892858
2990 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g21930.2

Sequence Viewer

Length: 561 bp
ATGAGGAGGTGGAAAAAAGAATATGCAATAGTTTACAACATGATTAATAAAACTGGTTTTGCATGGAATGATGTACGAAAATGTTTGAGGTTGATAGCACTGAAGTATGACAAATCCTATGTGAAGGTTAACAAAGAAGCAAAGAGCTGGCTAGGAAAATCGTATCCCTTGTATGACAGATTGAATGTTATTTTTGGGAAAGACCGAGCAACCGGAGTAGAAGCTGTAACTCGTACTGAGATGATGAATGATCCTGAGCAAATTAATGAAGATGAAGATGAAGCTAAGGTGGAGACTAGTTCTCCCTTTATTGCTCGACGTTCTAGCAATTCAAGTACCAAGAAAAGGAAGATGTCAGTTGCTAATGATAATGATCTTGTTGTGGCATTTAAAGAAACGCTTTCCGAATCAGTTGATAAGTTGGGTGAAGTTTTACAAGCTGCTTTTAGGAAAGGAGTGGATCCAAAACTTGAGATTGCTTCAGAATTGTCAAATATGGATTTGTCTATTGATGGATCAAATCAAGGCATTGAATATCCTTTTCGAAAAGCCACAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

187

Amino Acids

21.26

Weight (kDa)

9.14

Isoelectric Point (pI)

47.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000261)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18411 FvH4_1g22560 FvH4_1g24290 FvH4_1g24290 FvH4_1g24290 FvH4_1g29434 FvH4_2g04031 FvH4_2g04811 FvH4_2g07610 FvH4_2g09412 FvH4_3g15552 FvH4_3g30720 FvH4_4g05810 FvH4_4g09541 FvH4_4g15171 FvH4_6g09145 FvH4_6g49541 FvH4_7g00320 FvH4_7g11552
malus_domestica MD00G1072400.v1.1 MD01G1188100.v1.1 MD07G1132000.v1.1 MD08G1190700.v1.1 MD10G1011200.v1.1 MD14G1164100.v1.1 MD15G1289200.v1.1 MD15G1289300.v1.1 MD17G1245100.v1.1
prunus_persica Prupe.6G228600_v2.0.a1
pyrus_communis pycom01g07070 pycom02g06890 pycom02g06900 pycom02g13930 pycom04g07470 pycom04g11770 pycom04g21930 pycom05g08520 pycom06g04490 pycom06g09560 pycom07g03750 pycom08g08760 pycom08g13660 pycom09g11520 pycom09g14250 pycom09g14770 pycom10g00720 pycom10g01290 pycom10g10480 pycom10g15700 pycom12420g00130 pycom12g05380 pycom12g08750 pycom13g19010 pycom13g29080 pycom14g06210 pycom14g13680 pycom14g19850 pycom15g22070 pycom15g23440 pycom15g24950 pycom15g25280 pycom16g11100 pycom16g17080 pycom16g26310 pycom17g15650 pycom17g15670 pycom17g20370
rosa_chinensis RchiOBHm_Chr1g0373591 RchiOBHm_Chr2g0105551 RchiOBHm_Chr2g0106711 RchiOBHm_Chr2g0106721 RchiOBHm_Chr7g0219611
rosa_laevigata RLG00000013773 RLG00000017436 RLG00000017533
rosa_multiflora Rmu_co8001842.1_g000001 Rmu_co8158450.1_g000001 Rmu_sc0000516.1_g000067 Rmu_sc0000566.1_g000009 Rmu_sc0000965.1_g000025 Rmu_sc0001718.1_g000001 Rmu_sc0001719.1_g000020 Rmu_sc0001822.1_g000025 Rmu_sc0002219.1_g000003 Rmu_sc0002460.1_g000059 Rmu_sc0002757.1_g000001 Rmu_sc0002860.1_g000001 Rmu_sc0004531.1_g000001 Rmu_sc0005558.1_g000003 Rmu_sc0011218.1_g000001 Rmu_sc0011998.1_g000003 Rmu_sc0015560.1_g000002 Rmu_sc0015560.1_g000003
rosa_roxburghii Rroxscaffold_1G00004200 Rroxscaffold_1G00026570 Rroxscaffold_1G00040370 Rroxscaffold_1G00044120 Rroxscaffold_1G00049590 Rroxscaffold_1G00059030 Rroxscaffold_2G00108440 Rroxscaffold_2G00108850 Rroxscaffold_2G00130680 Rroxscaffold_2G00132980 Rroxscaffold_2G00136860 Rroxscaffold_3G00218610 Rroxscaffold_4G00309940 Rroxscaffold_6G00405560
rosa_rugosa Rorug02G0138000 Rorug02G0138100 Rorug02G0138100 Rorug06G0154000
rosa_samantha Rh1AG121500 Rh1CG116300 Rh2AG189000 Rh2AG509600 Rh2BG200200 Rh2CG194100 Rh2DG195300 Rh5AG114400 Rh5DG488800
rosa_wichuraiana Rw0G022020 Rw1G023650 Rw1G026380 Rw1G034750 Rw1G040770 Rw2G014870 Rw2G016560 Rw4G031190 Rw5G026570 Rw6G003020 Rw6G012060 Rw7G014300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 4 cut(s) 245, 455, 468, 523
AcuI CTGAAG 2 cut(s) 122, 465
AfaI GTAC 3 cut(s) 75, 235, 337
AfiI CCNNNNNNNGG 1 cut(s) 345
AgsI TTSAA 3 cut(s) 184, 333, 533
AhlI ACTAGT 1 cut(s) 296
AluBI AGCT 4 cut(s) 147, 224, 284, 440
AluI AGCT 4 cut(s) 147, 224, 284, 440
Alw26I GTCTC 1 cut(s) 287
AlwI GGATC 4 cut(s) 245, 455, 468, 523
ApeKI GCWGC 1 cut(s) 440
AseI ATTAAT 2 cut(s) 45, 264
AsuHPI GGTGA 1 cut(s) 437
AsuII TTCGAA 1 cut(s) 544
BamHI GGATCC 1 cut(s) 460
BbvI GCAGC 1 cut(s) 427
BccI CCATC 1 cut(s) 506
BciVI GTATCC 1 cut(s) 174
BcoDI GTCTC 1 cut(s) 287
BcuI ACTAGT 1 cut(s) 296
BfaI CTAG 3 cut(s) 152, 297, 324
BfuI GTATCC 1 cut(s) 174
BisI GCNGC 1 cut(s) 441
BlsI GCNGC 1 cut(s) 442
BmiI GGNNCC 1 cut(s) 462
Bpu10I CCTNAGC 2 cut(s) 255, 285
Bpu14I TTCGAA 1 cut(s) 544
BpuEI CTTGAG 1 cut(s) 491
BsaBI GATNNNNATC 1 cut(s) 372
BsaWI WCCGGW 1 cut(s) 212
BsaXI ACNNNNNCTCC 2 cut(s) 286, 316
Bsc4I CCNNNNNNNGG 1 cut(s) 345
Bse1I ACTGG 1 cut(s) 58
Bse8I GATNNNNATC 1 cut(s) 372
BseJI GATNNNNATC 1 cut(s) 372
BseLI CCNNNNNNNGG 1 cut(s) 345
BseMII CTCAG 2 cut(s) 228, 246
BseNI ACTGG 1 cut(s) 58
BseRI GAGGAG 1 cut(s) 19
BseXI GCAGC 1 cut(s) 427
BsiSI CCGG 1 cut(s) 213
BslI CCNNNNNNNGG 1 cut(s) 345
BsmAI GTCTC 1 cut(s) 287
Bsp119I TTCGAA 1 cut(s) 544
Bsp143I GATC 4 cut(s) 250, 373, 460, 515
BspCNI CTCAG 2 cut(s) 229, 247
BspLI GGNNCC 1 cut(s) 462
BspPI GGATC 4 cut(s) 245, 455, 468, 523
BspT104I TTCGAA 1 cut(s) 544
BsrI ACTGG 1 cut(s) 58
BssMI GATC 4 cut(s) 250, 373, 460, 515
BstBI TTCGAA 1 cut(s) 544
BstC8I GCNNGC 1 cut(s) 149
BstDEI CTNAG 3 cut(s) 237, 255, 285
BstKTI GATC 4 cut(s) 253, 376, 463, 518
BstMAI GTCTC 1 cut(s) 287
BstMBI GATC 4 cut(s) 250, 373, 460, 515
BstV1I GCAGC 1 cut(s) 427
BstX2I RGATCY 1 cut(s) 460
BstYI RGATCY 1 cut(s) 460
BsuI GTATCC 1 cut(s) 174
BtsIMutI CAGTG 1 cut(s) 98
Cac8I GCNNGC 1 cut(s) 149
Csp6I GTAC 3 cut(s) 74, 234, 336
CviAII CATG 2 cut(s) 40, 63
CviJI RGCY 6 cut(s) 147, 151, 224, 284, 440, 551
CviKI_1 RGCY 6 cut(s) 147, 151, 224, 284, 440, 551
CviQI GTAC 3 cut(s) 74, 234, 336
DdeI CTNAG 3 cut(s) 237, 255, 285
DpnI GATC 4 cut(s) 252, 375, 462, 517
DpnII GATC 4 cut(s) 250, 373, 460, 515
DraI TTTAAA 1 cut(s) 391
Eco57I CTGAAG 2 cut(s) 122, 465
FaeI CATG 2 cut(s) 43, 66
FaiI YATR 7 cut(s) 24, 41, 64, 108, 120, 174, 497
FalI AAGNNNNNCTT 2 cut(s) 384, 416
FatI CATG 2 cut(s) 39, 62
Fnu4HI GCNGC 1 cut(s) 441
Fsp4HI GCNGC 1 cut(s) 441
FspBI CTAG 3 cut(s) 152, 297, 324
GluI GCNGC 1 cut(s) 441
HapII CCGG 1 cut(s) 213
Hin1II CATG 2 cut(s) 43, 66
HincII GTYRAC 1 cut(s) 130
HindII GTYRAC 1 cut(s) 130
HinfI GANTC 1 cut(s) 407
HpaI GTTAAC 1 cut(s) 130
HpaII CCGG 1 cut(s) 213
HphI GGTGA 1 cut(s) 437
Hpy166II GTNNAC 2 cut(s) 34, 130
Hpy188I TCNGA 2 cut(s) 406, 484
Hpy188III TCNNGA 1 cut(s) 254
Hpy8I GTNNAC 2 cut(s) 34, 130
Hpy99I CGWCG 1 cut(s) 321
HpyAV CCTTC 1 cut(s) 118
HpyCH4IV ACGT 1 cut(s) 319
HpyCH4V TGCA 2 cut(s) 26, 62
HpyF3I CTNAG 3 cut(s) 237, 255, 285
HpySE526I ACGT 1 cut(s) 319
Hsp92II CATG 2 cut(s) 43, 66
KspAI GTTAAC 1 cut(s) 130
Kzo9I GATC 4 cut(s) 250, 373, 460, 515
LpnPI CCDG 4 cut(s) 39, 133, 226, 267
Lsp1109I GCAGC 1 cut(s) 427
MaeI CTAG 3 cut(s) 152, 297, 324
MaeII ACGT 1 cut(s) 319
MaeIII GTNAC 1 cut(s) 226
MalI GATC 4 cut(s) 252, 375, 462, 517
MboI GATC 4 cut(s) 250, 373, 460, 515
MboII GAAGA 3 cut(s) 281, 287, 361
MflI RGATCY 1 cut(s) 460
MluCI AATT 3 cut(s) 261, 328, 485
MnlI CCTC 1 cut(s) 81
MseI TTAA 4 cut(s) 45, 129, 264, 390
MspI CCGG 1 cut(s) 213
NdeII GATC 4 cut(s) 250, 373, 460, 515
NlaIII CATG 2 cut(s) 43, 66
NlaIV GGNNCC 1 cut(s) 462
NspV TTCGAA 1 cut(s) 544
PfeI GAWTC 1 cut(s) 407
PkrI GCNGC 1 cut(s) 442
PshBI ATTAAT 2 cut(s) 45, 264
PspN4I GGNNCC 1 cut(s) 462
PsuI RGATCY 1 cut(s) 460
RsaI GTAC 3 cut(s) 75, 235, 337
RsaNI GTAC 3 cut(s) 74, 234, 336
SaqAI TTAA 4 cut(s) 45, 129, 264, 390
SatI GCNGC 1 cut(s) 441
Sau3AI GATC 4 cut(s) 250, 373, 460, 515
SetI ASST 9 cut(s) 11, 92, 129, 149, 226, 286, 291, 322, 442
SfuI TTCGAA 1 cut(s) 544
SmlI CTYRAG 1 cut(s) 470
SmoI CTYRAG 1 cut(s) 470
SpeI ACTAGT 1 cut(s) 296
Sse9I AATT 3 cut(s) 261, 328, 485
SspMI CTAG 3 cut(s) 152, 297, 324
TaiI ACGT 1 cut(s) 322
TaqI TCGA 2 cut(s) 316, 544
TaqII GACCGA 1 cut(s) 219
TasI AATT 3 cut(s) 261, 328, 485
TfiI GAWTC 1 cut(s) 407
Tru1I TTAA 4 cut(s) 45, 129, 264, 390
Tru9I TTAA 4 cut(s) 45, 129, 264, 390
TscAI CASTG 1 cut(s) 105
TseI GCWGC 1 cut(s) 440
TspDTI ATGAA 4 cut(s) 260, 282, 288, 294
TspRI CASTG 1 cut(s) 105
VspI ATTAAT 2 cut(s) 45, 264
XspI CTAG 3 cut(s) 152, 297, 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.