RLG00000017436

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000261
Physical Location & Seq
Reverse (-)
16720775 .. 16722602
1828 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017436

Sequence Viewer

Length: 615 bp
ATGGATTCTGAAGATAGTCTTATAAGTGATAGAAAAAAGAGAGAAAGACGAGTATGGACAGATGAGCAGGAAGATACTCTTCTAAACATCCTAGAAGAACTAGTTGCAAATGGTCATGCTCGTAAAAATGGCACATTCAAACCTGAGGAAGTTAATGAAGAGCTTGAAAACCAAGAGCATGCTGATGCATTTGATTCTAAGGTAGAAGCAGACCAACTATCCACTGCTAAATCTGAGTCCACTTCTAAATCCGAGTCTACAAGCACGAGTAGGAGGAGGAAAAGAGAGGATGATGATAACATAGTTCGTGGCTTAGACAAGTTTGCTGCAACATTCAAAGAAGTGATGCAGACTTCAAATGAGCAAATCCGCCTTCTTGTTGAATACTTGCAGCCAAAAGGTAGCAAAAAAATGAGAACGTACATGAAGCTCTATGCTTGCATGGTGGACCTTTTAGGACGATCCGGTAACTTGACCGAGGCTTATGACATTGCTAGGGGACTCCCCTGTAAACCTTCAATACGCCTAGTTGAGTCTCTGCTAGGTGCTTGCAGAATTCAAGGGAATGTTGAAGTTGGAGAGAAAATTGATGAACTTGTTCTAGATCTAAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 WEMBL

Protein Analysis

205

Amino Acids

23.2

Weight (kDa)

5.06

Isoelectric Point (pI)

55.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000261)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18411 FvH4_1g22560 FvH4_1g24290 FvH4_1g24290 FvH4_1g24290 FvH4_1g29434 FvH4_2g04031 FvH4_2g04811 FvH4_2g07610 FvH4_2g09412 FvH4_3g15552 FvH4_3g30720 FvH4_4g05810 FvH4_4g09541 FvH4_4g15171 FvH4_6g09145 FvH4_6g49541 FvH4_7g00320 FvH4_7g11552
malus_domestica MD00G1072400.v1.1 MD01G1188100.v1.1 MD07G1132000.v1.1 MD08G1190700.v1.1 MD10G1011200.v1.1 MD14G1164100.v1.1 MD15G1289200.v1.1 MD15G1289300.v1.1 MD17G1245100.v1.1
prunus_persica Prupe.6G228600_v2.0.a1
pyrus_communis pycom01g07070 pycom02g06890 pycom02g06900 pycom02g13930 pycom04g07470 pycom04g11770 pycom04g21930 pycom05g08520 pycom06g04490 pycom06g09560 pycom07g03750 pycom08g08760 pycom08g13660 pycom09g11520 pycom09g14250 pycom09g14770 pycom10g00720 pycom10g01290 pycom10g10480 pycom10g15700 pycom12420g00130 pycom12g05380 pycom12g08750 pycom13g19010 pycom13g29080 pycom14g06210 pycom14g13680 pycom14g19850 pycom15g22070 pycom15g23440 pycom15g24950 pycom15g25280 pycom16g11100 pycom16g17080 pycom16g26310 pycom17g15650 pycom17g15670 pycom17g20370
rosa_chinensis RchiOBHm_Chr1g0373591 RchiOBHm_Chr2g0105551 RchiOBHm_Chr2g0106711 RchiOBHm_Chr2g0106721 RchiOBHm_Chr7g0219611
rosa_laevigata RLG00000013773 RLG00000017436 RLG00000017533
rosa_multiflora Rmu_co8001842.1_g000001 Rmu_co8158450.1_g000001 Rmu_sc0000516.1_g000067 Rmu_sc0000566.1_g000009 Rmu_sc0000965.1_g000025 Rmu_sc0001718.1_g000001 Rmu_sc0001719.1_g000020 Rmu_sc0001822.1_g000025 Rmu_sc0002219.1_g000003 Rmu_sc0002460.1_g000059 Rmu_sc0002757.1_g000001 Rmu_sc0002860.1_g000001 Rmu_sc0004531.1_g000001 Rmu_sc0005558.1_g000003 Rmu_sc0011218.1_g000001 Rmu_sc0011998.1_g000003 Rmu_sc0015560.1_g000002 Rmu_sc0015560.1_g000003
rosa_roxburghii Rroxscaffold_1G00004200 Rroxscaffold_1G00026570 Rroxscaffold_1G00040370 Rroxscaffold_1G00044120 Rroxscaffold_1G00049590 Rroxscaffold_1G00059030 Rroxscaffold_2G00108440 Rroxscaffold_2G00108850 Rroxscaffold_2G00130680 Rroxscaffold_2G00132980 Rroxscaffold_2G00136860 Rroxscaffold_3G00218610 Rroxscaffold_4G00309940 Rroxscaffold_6G00405560
rosa_rugosa Rorug02G0138000 Rorug02G0138100 Rorug02G0138100 Rorug06G0154000
rosa_samantha Rh1AG121500 Rh1CG116300 Rh2AG189000 Rh2AG509600 Rh2BG200200 Rh2CG194100 Rh2DG195300 Rh5AG114400 Rh5DG488800
rosa_wichuraiana Rw0G022020 Rw1G023650 Rw1G026380 Rw1G034750 Rw1G040770 Rw2G014870 Rw2G016560 Rw4G031190 Rw5G026570 Rw6G003020 Rw6G012060 Rw7G014300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 23
AccI GTMKAC 1 cut(s) 257
AciI CCGC 1 cut(s) 370
AclWI GGATC 1 cut(s) 456
AcsI RAATTY 1 cut(s) 555
AcuI CTGAAG 1 cut(s) 30
AfaI GTAC 1 cut(s) 422
AgsI TTSAA 8 cut(s) 139, 167, 337, 357, 383, 519, 560, 572
AhlI ACTAGT 1 cut(s) 100
AluBI AGCT 2 cut(s) 163, 430
AluI AGCT 2 cut(s) 163, 430
Alw26I GTCTC 1 cut(s) 540
AlwI GGATC 1 cut(s) 456
ApeKI GCWGC 2 cut(s) 326, 391
ApoI RAATTY 1 cut(s) 555
Asp700I GAANNNNTTC 1 cut(s) 597
AspS9I GGNCC 1 cut(s) 448
AvaII GGWCC 1 cut(s) 448
AxyI CCTNAGG 1 cut(s) 144
BauI CACGAG 1 cut(s) 265
BbvI GCAGC 2 cut(s) 313, 403
BcoDI GTCTC 1 cut(s) 540
BcuI ACTAGT 1 cut(s) 100
BfaI CTAG 6 cut(s) 92, 101, 495, 527, 542, 602
BglII AGATCT 1 cut(s) 604
BisI GCNGC 2 cut(s) 327, 392
BlsI GCNGC 2 cut(s) 328, 393
Bme18I GGWCC 1 cut(s) 448
BmgT120I GGNCC 1 cut(s) 448
BmsI GCATC 2 cut(s) 175, 336
BsaJI CCNNGG 1 cut(s) 477
BsaWI WCCGGW 1 cut(s) 464
Bse21I CCTNAGG 1 cut(s) 144
Bse3DI GCAATG 1 cut(s) 489
BseDI CCNNGG 1 cut(s) 477
BseGI GGATG 2 cut(s) 87, 295
BseMI GCAATG 1 cut(s) 489
BseMII CTCAG 2 cut(s) 135, 225
BseRI GAGGAG 1 cut(s) 289
BseXI GCAGC 2 cut(s) 313, 403
BsiSI CCGG 1 cut(s) 465
BslFI GGGAC 1 cut(s) 513
BsmAI GTCTC 1 cut(s) 540
BsmFI GGGAC 1 cut(s) 513
Bsp143I GATC 2 cut(s) 461, 604
BspACI CCGC 1 cut(s) 370
BspCNI CTCAG 2 cut(s) 136, 226
BspPI GGATC 1 cut(s) 456
BspQI GCTCTTC 1 cut(s) 153
BsrDI GCAATG 1 cut(s) 489
BssECI CCNNGG 1 cut(s) 477
BssMI GATC 2 cut(s) 461, 604
BssSI CACGAG 1 cut(s) 265
Bst2BI CACGAG 1 cut(s) 265
Bst6I CTCTTC 2 cut(s) 84, 153
BstC8I GCNNGC 3 cut(s) 180, 439, 550
BstDEI CTNAG 4 cut(s) 144, 198, 234, 313
BstF5I GGATG 2 cut(s) 87, 295
BstKTI GATC 2 cut(s) 464, 607
BstMAI GTCTC 1 cut(s) 540
BstMBI GATC 2 cut(s) 461, 604
BstNSI RCATGY 1 cut(s) 182
BstV1I GCAGC 2 cut(s) 313, 403
BstX2I RGATCY 1 cut(s) 604
BstYI RGATCY 1 cut(s) 604
Bsu36I CCTNAGG 1 cut(s) 144
BtsCI GGATG 2 cut(s) 87, 295
BtsI GCAGTG 1 cut(s) 222
BtsIMutI CAGTG 1 cut(s) 222
Cac8I GCNNGC 3 cut(s) 180, 439, 550
Cfr13I GGNCC 1 cut(s) 448
Csp6I GTAC 1 cut(s) 421
CviAII CATG 4 cut(s) 116, 179, 424, 442
CviJI RGCY 5 cut(s) 163, 312, 394, 430, 482
CviKI_1 RGCY 5 cut(s) 163, 312, 394, 430, 482
CviQI GTAC 1 cut(s) 421
DdeI CTNAG 4 cut(s) 144, 198, 234, 313
DpnI GATC 2 cut(s) 463, 606
DpnII GATC 2 cut(s) 461, 604
Eam1104I CTCTTC 2 cut(s) 84, 153
EarI CTCTTC 2 cut(s) 84, 153
EciI GGCGGA 1 cut(s) 359
Eco47I GGWCC 1 cut(s) 448
Eco57I CTGAAG 1 cut(s) 30
Eco81I CCTNAGG 1 cut(s) 144
EcoRI GAATTC 1 cut(s) 555
EcoT22I ATGCAT 1 cut(s) 190
FaeI CATG 4 cut(s) 119, 182, 427, 445
FaiI YATR 9 cut(s) 23, 55, 117, 180, 302, 425, 435, 443, 486
FalI AAGNNNNNCTT 3 cut(s) 35, 63, 95
FaqI GGGAC 1 cut(s) 513
FatI CATG 4 cut(s) 115, 178, 423, 441
FblI GTMKAC 1 cut(s) 257
Fnu4HI GCNGC 2 cut(s) 327, 392
FokI GGATG 2 cut(s) 74, 302
Fsp4HI GCNGC 2 cut(s) 327, 392
FspBI CTAG 6 cut(s) 92, 101, 495, 527, 542, 602
GluI GCNGC 2 cut(s) 327, 392
HapII CCGG 1 cut(s) 465
Hin1II CATG 4 cut(s) 119, 182, 427, 445
HinfI GANTC 6 cut(s) 5, 194, 236, 254, 501, 533
HpaII CCGG 1 cut(s) 465
Hpy166II GTNNAC 4 cut(s) 240, 258, 448, 512
Hpy188I TCNGA 3 cut(s) 10, 235, 253
Hpy188III TCNNGA 1 cut(s) 602
Hpy8I GTNNAC 4 cut(s) 240, 258, 448, 512
HpyAV CCTTC 2 cut(s) 383, 525
HpyCH4IV ACGT 1 cut(s) 419
HpyCH4V TGCA 7 cut(s) 107, 188, 329, 349, 391, 441, 552
HpyF3I CTNAG 4 cut(s) 144, 198, 234, 313
HpySE526I ACGT 1 cut(s) 419
Hsp92II CATG 4 cut(s) 119, 182, 427, 445
Kzo9I GATC 2 cut(s) 461, 604
LguI GCTCTTC 1 cut(s) 153
LpnPI CCDG 4 cut(s) 53, 156, 478, 520
Lsp1109I GCAGC 2 cut(s) 313, 403
LweI GCATC 2 cut(s) 175, 336
MaeI CTAG 6 cut(s) 92, 101, 495, 527, 542, 602
MaeII ACGT 1 cut(s) 419
MaeIII GTNAC 1 cut(s) 467
MalI GATC 2 cut(s) 463, 606
MboI GATC 2 cut(s) 461, 604
MboII GAAGA 5 cut(s) 23, 71, 83, 107, 170
MflI RGATCY 1 cut(s) 604
MluCI AATT 3 cut(s) 555, 585, 610
MlyI GAGTC 4 cut(s) 245, 263, 495, 542
MmeI TCCRAC 1 cut(s) 556
MnlI CCTC 5 cut(s) 139, 267, 270, 280, 472
Mph1103I ATGCAT 1 cut(s) 190
MroXI GAANNNNTTC 1 cut(s) 597
MseI TTAA 1 cut(s) 153
MslI CAYNNNNRTG 1 cut(s) 183
MspI CCGG 1 cut(s) 465
NdeII GATC 2 cut(s) 461, 604
NlaIII CATG 4 cut(s) 119, 182, 427, 445
NsiI ATGCAT 1 cut(s) 190
NspI RCATGY 1 cut(s) 182
PaeI GCATGC 1 cut(s) 182
PciSI GCTCTTC 1 cut(s) 153
PdmI GAANNNNTTC 1 cut(s) 597
PfeI GAWTC 2 cut(s) 5, 194
PkrI GCNGC 2 cut(s) 328, 393
PleI GAGTC 4 cut(s) 244, 262, 495, 541
PpsI GAGTC 4 cut(s) 244, 262, 495, 541
PsiI TTATAA 1 cut(s) 23
PspPI GGNCC 1 cut(s) 448
PsuI RGATCY 1 cut(s) 604
RsaI GTAC 1 cut(s) 422
RsaNI GTAC 1 cut(s) 421
RseI CAYNNNNRTG 1 cut(s) 183
SapI GCTCTTC 1 cut(s) 153
SaqAI TTAA 1 cut(s) 153
SatI GCNGC 2 cut(s) 327, 392
Sau3AI GATC 2 cut(s) 461, 604
Sau96I GGNCC 1 cut(s) 448
SchI GAGTC 4 cut(s) 245, 263, 495, 542
SetI ASST 9 cut(s) 145, 165, 204, 403, 422, 432, 453, 517, 547
SfaNI GCATC 2 cut(s) 175, 336
SinI GGWCC 1 cut(s) 448
SmiMI CAYNNNNRTG 1 cut(s) 183
SpeI ACTAGT 1 cut(s) 100
SphI GCATGC 1 cut(s) 182
Sse9I AATT 3 cut(s) 555, 585, 610
SsiI CCGC 1 cut(s) 370
SspMI CTAG 6 cut(s) 92, 101, 495, 527, 542, 602
TaiI ACGT 1 cut(s) 422
TaqII GACCGA 1 cut(s) 491
TasI AATT 3 cut(s) 555, 585, 610
TfiI GAWTC 2 cut(s) 5, 194
Tru1I TTAA 1 cut(s) 153
Tru9I TTAA 1 cut(s) 153
TscAI CASTG 1 cut(s) 229
TseI GCWGC 2 cut(s) 326, 391
TspDTI ATGAA 3 cut(s) 171, 440, 606
TspRI CASTG 1 cut(s) 229
VpaK11BI GGWCC 1 cut(s) 448
XapI RAATTY 1 cut(s) 555
XbaI TCTAGA 1 cut(s) 601
XceI RCATGY 1 cut(s) 182
XmiI GTMKAC 1 cut(s) 257
XmnI GAANNNNTTC 1 cut(s) 597
XspI CTAG 6 cut(s) 92, 101, 495, 527, 542, 602
Zsp2I ATGCAT 1 cut(s) 190
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.