Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0000261

Physical Location & Seq

Genomic Coordinates Reverse (-)

10642225 .. 10644344

Gene Structure 2120 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG114400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 258 bp

ATGCCTTCTTTGTATGTGTGCAGAGTTATCATGGCTTCTAGTGGTGTATCTTTTGGGATGGATTCTGAAGATAATAGTCTTATAAGTGATAGAAAAAAGAGAGAAAGACGTGAATGGACATATGAGCAGGAGGATACTCTTCTAAACATCCTAGAAGAATTAGTTGCAAATGGTCATGCTCGTAAAAATGGCACATTCAAACCTGGTACATCAACTATGATTGAGAATGCTTTACTAGATAAATTTCCCAATTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000123 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006325 GO:0006338 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0031248 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0051276 GO:0070013 GO:0071704 GO:0071840 GO:1901564 GO:1902493 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MRG Tudor-knot

Protein Analysis

85

Amino Acids

9.64

Weight (kDa)

5.33

Isoelectric Point (pI)

49.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000261)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g18411 FvH4_1g22560 FvH4_1g24290 FvH4_1g24290 FvH4_1g24290 FvH4_1g29434 FvH4_2g04031 FvH4_2g04811 FvH4_2g07610 FvH4_2g09412 FvH4_3g15552 FvH4_3g30720 FvH4_4g05810 FvH4_4g09541 FvH4_4g15171 FvH4_6g09145 FvH4_6g49541 FvH4_7g00320 FvH4_7g11552
malus_domestica	MD00G1072400.v1.1 MD01G1188100.v1.1 MD07G1132000.v1.1 MD08G1190700.v1.1 MD10G1011200.v1.1 MD14G1164100.v1.1 MD15G1289200.v1.1 MD15G1289300.v1.1 MD17G1245100.v1.1
prunus_persica	Prupe.6G228600_v2.0.a1
pyrus_communis	pycom01g07070 pycom02g06890 pycom02g06900 pycom02g13930 pycom04g07470 pycom04g11770 pycom04g21930 pycom05g08520 pycom06g04490 pycom06g09560 pycom07g03750 pycom08g08760 pycom08g13660 pycom09g11520 pycom09g14250 pycom09g14770 pycom10g00720 pycom10g01290 pycom10g10480 pycom10g15700 pycom12420g00130 pycom12g05380 pycom12g08750 pycom13g19010 pycom13g29080 pycom14g06210 pycom14g13680 pycom14g19850 pycom15g22070 pycom15g23440 pycom15g24950 pycom15g25280 pycom16g11100 pycom16g17080 pycom16g26310 pycom17g15650 pycom17g15670 pycom17g20370
rosa_chinensis	RchiOBHm_Chr1g0373591 RchiOBHm_Chr2g0105551 RchiOBHm_Chr2g0106711 RchiOBHm_Chr2g0106721 RchiOBHm_Chr7g0219611
rosa_laevigata	RLG00000013773 RLG00000017436 RLG00000017533
rosa_multiflora	Rmu_co8001842.1_g000001 Rmu_co8158450.1_g000001 Rmu_sc0000516.1_g000067 Rmu_sc0000566.1_g000009 Rmu_sc0000965.1_g000025 Rmu_sc0001718.1_g000001 Rmu_sc0001719.1_g000020 Rmu_sc0001822.1_g000025 Rmu_sc0002219.1_g000003 Rmu_sc0002460.1_g000059 Rmu_sc0002757.1_g000001 Rmu_sc0002860.1_g000001 Rmu_sc0004531.1_g000001 Rmu_sc0005558.1_g000003 Rmu_sc0011218.1_g000001 Rmu_sc0011998.1_g000003 Rmu_sc0015560.1_g000002 Rmu_sc0015560.1_g000003
rosa_roxburghii	Rroxscaffold_1G00004200 Rroxscaffold_1G00026570 Rroxscaffold_1G00040370 Rroxscaffold_1G00044120 Rroxscaffold_1G00049590 Rroxscaffold_1G00059030 Rroxscaffold_2G00108440 Rroxscaffold_2G00108850 Rroxscaffold_2G00130680 Rroxscaffold_2G00132980 Rroxscaffold_2G00136860 Rroxscaffold_3G00218610 Rroxscaffold_4G00309940 Rroxscaffold_6G00405560
rosa_rugosa	Rorug02G0138000 Rorug02G0138100 Rorug02G0138100 Rorug06G0154000
rosa_samantha	Rh1AG121500 Rh1CG116300 Rh2AG189000 Rh2AG509600 Rh2BG200200 Rh2CG194100 Rh2DG195300 Rh5AG114400 Rh5DG488800
rosa_wichuraiana	Rw0G022020 Rw1G023650 Rw1G026380 Rw1G034750 Rw1G040770 Rw2G014870 Rw2G016560 Rw4G031190 Rw5G026570 Rw6G003020 Rw6G012060 Rw7G014300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	83
AcsI	RAATTY	1 cut(s)	242
AcuI	CTGAAG	1 cut(s)	87
AfaI	GTAC	1 cut(s)	208
AgsI	TTSAA	1 cut(s)	199
AjiI	CACGTC	1 cut(s)	110
AjnI	CCWGG	1 cut(s)	202
ApoI	RAATTY	1 cut(s)	242
BccI	CCATC	1 cut(s)	52
BciT130I	CCWGG	1 cut(s)	204
BciVI	GTATCC	1 cut(s)	127
BfaI	CTAG	3 cut(s)	39, 152, 236
BfuI	GTATCC	1 cut(s)	127
Bme1390I	CCNGG	1 cut(s)	204
BmgBI	CACGTC	1 cut(s)	110
BmrFI	CCNGG	1 cut(s)	204
BseBI	CCWGG	1 cut(s)	204
BseGI	GGATG	2 cut(s)	63, 147
BsgI	GTGCAG	1 cut(s)	40
BsmI	GAATGC	1 cut(s)	232
Bst2UI	CCWGG	1 cut(s)	204
Bst6I	CTCTTC	1 cut(s)	144
BstF5I	GGATG	2 cut(s)	63, 147
BstNI	CCWGG	1 cut(s)	204
BstSCI	CCNGG	1 cut(s)	202
BsuI	GTATCC	1 cut(s)	127
BtrI	CACGTC	1 cut(s)	110
BtsCI	GGATG	2 cut(s)	63, 147
CsiI	ACCWGGT	1 cut(s)	202
Csp6I	GTAC	1 cut(s)	207
CviAII	CATG	2 cut(s)	31, 176
CviJI	RGCY	1 cut(s)	35
CviKI_1	RGCY	1 cut(s)	35
CviQI	GTAC	1 cut(s)	207
Eam1104I	CTCTTC	1 cut(s)	144
EarI	CTCTTC	1 cut(s)	144
Eco57I	CTGAAG	1 cut(s)	87
EcoRII	CCWGG	1 cut(s)	202
FaeI	CATG	2 cut(s)	34, 179
FaiI	YATR	7 cut(s)	15, 32, 83, 121, 123, 177, 218
FatI	CATG	2 cut(s)	30, 175
FauNDI	CATATG	1 cut(s)	121
FokI	GGATG	2 cut(s)	70, 134
FspBI	CTAG	3 cut(s)	39, 152, 236
Hin1II	CATG	2 cut(s)	34, 179
HinfI	GANTC	1 cut(s)	62
Hpy188I	TCNGA	1 cut(s)	67
Hpy188III	TCNNGA	1 cut(s)	255
HpyAV	CCTTC	1 cut(s)	15
HpyCH4IV	ACGT	1 cut(s)	109
HpyCH4V	TGCA	2 cut(s)	21, 167
HpySE526I	ACGT	1 cut(s)	109
Hsp92II	CATG	2 cut(s)	34, 179
LpnPI	CCDG	3 cut(s)	113, 189, 216
MabI	ACCWGGT	1 cut(s)	202
MaeI	CTAG	3 cut(s)	39, 152, 236
MaeII	ACGT	1 cut(s)	109
MboII	GAAGA	3 cut(s)	80, 131, 167
MluCI	AATT	3 cut(s)	158, 242, 250
MnlI	CCTC	1 cut(s)	124
MspR9I	CCNGG	1 cut(s)	204
Mva1269I	GAATGC	1 cut(s)	232
MvaI	CCWGG	1 cut(s)	204
NdeI	CATATG	1 cut(s)	121
NlaIII	CATG	2 cut(s)	34, 179
PctI	GAATGC	1 cut(s)	232
PfeI	GAWTC	1 cut(s)	62
PsiI	TTATAA	1 cut(s)	83
Psp6I	CCWGG	1 cut(s)	202
PspGI	CCWGG	1 cut(s)	202
RsaI	GTAC	1 cut(s)	208
RsaNI	GTAC	1 cut(s)	207
ScrFI	CCNGG	1 cut(s)	204
SetI	ASST	2 cut(s)	112, 205
SexAI	ACCWGGT	1 cut(s)	202
Sse9I	AATT	3 cut(s)	158, 242, 250
SspMI	CTAG	3 cut(s)	39, 152, 236
StyD4I	CCNGG	1 cut(s)	202
TaiI	ACGT	1 cut(s)	112
TasI	AATT	3 cut(s)	158, 242, 250
TfiI	GAWTC	1 cut(s)	62
XapI	RAATTY	1 cut(s)	242
XspI	CTAG	3 cut(s)	39, 152, 236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.