FvH4_6g09145
MYB Family

nuclease HARBI1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000261
Physical Location & Seq
Forward (+)
5432516 .. 5433334
819 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g09145.t1

Sequence Viewer

Length: 414 bp
ATGGAAAATGAGGATATGAATTCCGAGCAGGCAAAGGCAGCTGGAACTAGGCGCAAGTGGACAAACTTTGAGGAAGATGCATTGTTGTCTGTCCTTGATGACTTTGTTACTCGATCGTGCCAATGGAATGGAAGAGGAGCTGAAACCCCTGCTGATATGGTGGATGAGCAAAGCAATAATGATATTAATCCTGAGAATCTGGTTAATGATGTAAGTCATGTGTCACTTAACCAAGAATCTAGCCAAACTGAAGGTAGTAGGAAGAGGAAGAGAGTTGATGAGACTGATAAGATTGTTGTTGCTTTGGAGAAAGTATTTGAAGAATCAGGAAAGAGGATGCAAATGGTAACTGAGGCCATATTGAAGGGTAATGAAGATCGCTCTGACATTGCCAAAGAGTTGAAGAACATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4 Myb_DNA-bind_3

Protein Analysis

138

Amino Acids

15.55

Weight (kDa)

4.65

Isoelectric Point (pI)

43.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000261)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18411 FvH4_1g22560 FvH4_1g24290 FvH4_1g24290 FvH4_1g24290 FvH4_1g29434 FvH4_2g04031 FvH4_2g04811 FvH4_2g07610 FvH4_2g09412 FvH4_3g15552 FvH4_3g30720 FvH4_4g05810 FvH4_4g09541 FvH4_4g15171 FvH4_6g09145 FvH4_6g49541 FvH4_7g00320 FvH4_7g11552
malus_domestica MD00G1072400.v1.1 MD01G1188100.v1.1 MD07G1132000.v1.1 MD08G1190700.v1.1 MD10G1011200.v1.1 MD14G1164100.v1.1 MD15G1289200.v1.1 MD15G1289300.v1.1 MD17G1245100.v1.1
prunus_persica Prupe.6G228600_v2.0.a1
pyrus_communis pycom01g07070 pycom02g06890 pycom02g06900 pycom02g13930 pycom04g07470 pycom04g11770 pycom04g21930 pycom05g08520 pycom06g04490 pycom06g09560 pycom07g03750 pycom08g08760 pycom08g13660 pycom09g11520 pycom09g14250 pycom09g14770 pycom10g00720 pycom10g01290 pycom10g10480 pycom10g15700 pycom12420g00130 pycom12g05380 pycom12g08750 pycom13g19010 pycom13g29080 pycom14g06210 pycom14g13680 pycom14g19850 pycom15g22070 pycom15g23440 pycom15g24950 pycom15g25280 pycom16g11100 pycom16g17080 pycom16g26310 pycom17g15650 pycom17g15670 pycom17g20370
rosa_chinensis RchiOBHm_Chr1g0373591 RchiOBHm_Chr2g0105551 RchiOBHm_Chr2g0106711 RchiOBHm_Chr2g0106721 RchiOBHm_Chr7g0219611
rosa_laevigata RLG00000013773 RLG00000017436 RLG00000017533
rosa_multiflora Rmu_co8001842.1_g000001 Rmu_co8158450.1_g000001 Rmu_sc0000516.1_g000067 Rmu_sc0000566.1_g000009 Rmu_sc0000965.1_g000025 Rmu_sc0001718.1_g000001 Rmu_sc0001719.1_g000020 Rmu_sc0001822.1_g000025 Rmu_sc0002219.1_g000003 Rmu_sc0002460.1_g000059 Rmu_sc0002757.1_g000001 Rmu_sc0002860.1_g000001 Rmu_sc0004531.1_g000001 Rmu_sc0005558.1_g000003 Rmu_sc0011218.1_g000001 Rmu_sc0011998.1_g000003 Rmu_sc0015560.1_g000002 Rmu_sc0015560.1_g000003
rosa_roxburghii Rroxscaffold_1G00004200 Rroxscaffold_1G00026570 Rroxscaffold_1G00040370 Rroxscaffold_1G00044120 Rroxscaffold_1G00049590 Rroxscaffold_1G00059030 Rroxscaffold_2G00108440 Rroxscaffold_2G00108850 Rroxscaffold_2G00130680 Rroxscaffold_2G00132980 Rroxscaffold_2G00136860 Rroxscaffold_3G00218610 Rroxscaffold_4G00309940 Rroxscaffold_6G00405560
rosa_rugosa Rorug02G0138000 Rorug02G0138100 Rorug02G0138100 Rorug06G0154000
rosa_samantha Rh1AG121500 Rh1CG116300 Rh2AG189000 Rh2AG509600 Rh2BG200200 Rh2CG194100 Rh2DG195300 Rh5AG114400 Rh5DG488800
rosa_wichuraiana Rw0G022020 Rw1G023650 Rw1G026380 Rw1G034750 Rw1G040770 Rw2G014870 Rw2G016560 Rw4G031190 Rw5G026570 Rw6G003020 Rw6G012060 Rw7G014300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 19
AcuI CTGAAG 1 cut(s) 270
AflIII ACRYGT 1 cut(s) 408
AgsI TTSAA 3 cut(s) 320, 364, 403
AluBI AGCT 2 cut(s) 41, 140
AluI AGCT 2 cut(s) 41, 140
Alw26I GTCTC 1 cut(s) 275
AoxI GGCC 1 cut(s) 354
ApeKI GCWGC 1 cut(s) 38
ApoI RAATTY 1 cut(s) 19
AseI ATTAAT 1 cut(s) 186
AspLEI GCGC 1 cut(s) 54
BbvI GCAGC 1 cut(s) 50
BcoDI GTCTC 1 cut(s) 275
BfaI CTAG 2 cut(s) 48, 240
BisI GCNGC 1 cut(s) 39
BlsI GCNGC 1 cut(s) 40
BmsI GCATC 2 cut(s) 67, 327
BsaBI GATNNNNATC 1 cut(s) 186
Bse3DI GCAATG 1 cut(s) 387
Bse8I GATNNNNATC 1 cut(s) 186
BseGI GGATG 2 cut(s) 169, 342
BseJI GATNNNNATC 1 cut(s) 186
BseMI GCAATG 1 cut(s) 387
BseMII CTCAG 2 cut(s) 183, 342
BseRI GAGGAG 1 cut(s) 150
BseXI GCAGC 1 cut(s) 50
Bsh1285I CGRYCG 1 cut(s) 116
BshFI GGCC 1 cut(s) 356
BsiEI CGRYCG 1 cut(s) 116
BsmAI GTCTC 1 cut(s) 275
BsnI GGCC 1 cut(s) 356
Bsp143I GATC 2 cut(s) 113, 376
BspANI GGCC 1 cut(s) 356
BspCNI CTCAG 2 cut(s) 184, 343
BsrDI GCAATG 1 cut(s) 387
BssMI GATC 2 cut(s) 113, 376
Bst6I CTCTTC 3 cut(s) 127, 257, 263
BstC8I GCNNGC 1 cut(s) 30
BstDEI CTNAG 2 cut(s) 192, 351
BstF5I GGATG 2 cut(s) 169, 342
BstHHI GCGC 1 cut(s) 54
BstKTI GATC 2 cut(s) 116, 379
BstMAI GTCTC 1 cut(s) 275
BstMBI GATC 2 cut(s) 113, 376
BstMCI CGRYCG 1 cut(s) 116
BstMWI GCNNNNNNNGC 1 cut(s) 38
BstNSI RCATGY 1 cut(s) 412
BstV1I GCAGC 1 cut(s) 50
BstXI CCANNNNNNTGG 1 cut(s) 128
BsuRI GGCC 1 cut(s) 356
BtsCI GGATG 2 cut(s) 169, 342
Cac8I GCNNGC 1 cut(s) 30
CfoI GCGC 1 cut(s) 54
CviAII CATG 2 cut(s) 218, 409
CviJI RGCY 4 cut(s) 41, 140, 243, 356
CviKI_1 RGCY 4 cut(s) 41, 140, 243, 356
DdeI CTNAG 2 cut(s) 192, 351
DpnI GATC 2 cut(s) 115, 378
DpnII GATC 2 cut(s) 113, 376
Eam1104I CTCTTC 3 cut(s) 127, 257, 263
EarI CTCTTC 3 cut(s) 127, 257, 263
Eco57I CTGAAG 1 cut(s) 270
EcoRI GAATTC 1 cut(s) 19
EcoT22I ATGCAT 1 cut(s) 82
FaeI CATG 2 cut(s) 221, 412
FaiI YATR 5 cut(s) 17, 158, 219, 359, 410
FatI CATG 2 cut(s) 217, 408
Fnu4HI GCNGC 1 cut(s) 39
FokI GGATG 2 cut(s) 176, 349
Fsp4HI GCNGC 1 cut(s) 39
FspBI CTAG 2 cut(s) 48, 240
GlaI GCGC 1 cut(s) 53
GluI GCNGC 1 cut(s) 39
HaeIII GGCC 1 cut(s) 356
HhaI GCGC 1 cut(s) 54
Hin1II CATG 2 cut(s) 221, 412
Hin6I GCGC 1 cut(s) 52
HinP1I GCGC 1 cut(s) 52
HinfI GANTC 3 cut(s) 196, 236, 323
Hpy166II GTNNAC 1 cut(s) 60
Hpy188I TCNGA 2 cut(s) 25, 385
Hpy188III TCNNGA 2 cut(s) 191, 327
Hpy8I GTNNAC 1 cut(s) 60
HpyAV CCTTC 2 cut(s) 245, 358
HpyCH4V TGCA 2 cut(s) 80, 340
HpyF10VI GCNNNNNNNGC 1 cut(s) 38
HpyF3I CTNAG 2 cut(s) 192, 351
Hsp92II CATG 2 cut(s) 221, 412
HspAI GCGC 1 cut(s) 52
Kzo9I GATC 2 cut(s) 113, 376
LmnI GCTCC 1 cut(s) 137
LpnPI CCDG 6 cut(s) 14, 27, 162, 185, 204, 312
Lsp1109I GCAGC 1 cut(s) 50
LweI GCATC 2 cut(s) 67, 327
MaeI CTAG 2 cut(s) 48, 240
MaeIII GTNAC 3 cut(s) 106, 222, 346
MalI GATC 2 cut(s) 115, 378
MboI GATC 2 cut(s) 113, 376
MboII GAAGA 6 cut(s) 86, 144, 274, 280, 332, 386
MluCI AATT 1 cut(s) 19
MnlI CCTC 6 cut(s) 4, 64, 128, 258, 327, 346
Mph1103I ATGCAT 1 cut(s) 82
MseI TTAA 3 cut(s) 186, 204, 228
MspA1I CMGCKG 1 cut(s) 41
MwoI GCNNNNNNNGC 1 cut(s) 38
NdeII GATC 2 cut(s) 113, 376
NlaIII CATG 2 cut(s) 221, 412
NmuCI GTSAC 1 cut(s) 222
NsiI ATGCAT 1 cut(s) 82
NspI RCATGY 1 cut(s) 412
PciI ACATGT 1 cut(s) 408
PfeI GAWTC 3 cut(s) 196, 236, 323
PkrI GCNGC 1 cut(s) 40
Ple19I CGATCG 1 cut(s) 116
PscI ACATGT 1 cut(s) 408
PshBI ATTAAT 1 cut(s) 186
PvuI CGATCG 1 cut(s) 116
PvuII CAGCTG 1 cut(s) 41
SaqAI TTAA 3 cut(s) 186, 204, 228
SatI GCNGC 1 cut(s) 39
Sau3AI GATC 2 cut(s) 113, 376
SetI ASST 3 cut(s) 43, 142, 256
SfaNI GCATC 2 cut(s) 67, 327
Sse9I AATT 1 cut(s) 19
SspMI CTAG 2 cut(s) 48, 240
TaqI TCGA 1 cut(s) 112
TasI AATT 1 cut(s) 19
TfiI GAWTC 3 cut(s) 196, 236, 323
Tru1I TTAA 3 cut(s) 186, 204, 228
Tru9I TTAA 3 cut(s) 186, 204, 228
TseFI GTSAC 1 cut(s) 222
TseI GCWGC 1 cut(s) 38
Tsp45I GTSAC 1 cut(s) 222
TspDTI ATGAA 2 cut(s) 32, 387
VspI ATTAAT 1 cut(s) 186
XapI RAATTY 1 cut(s) 19
XceI RCATGY 1 cut(s) 412
XspI CTAG 2 cut(s) 48, 240
Zsp2I ATGCAT 1 cut(s) 82
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.