pycom02g13930
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0000261
Physical Location & Seq
Forward (+)
10533494 .. 10534236
743 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g13930.2

Sequence Viewer

Length: 645 bp
ATGGTTGCTGGTGGTGTTAAGTGTGAGACTAGAAATTTAAAGGCTGGTACATTTGTAATGGTTGCCACCAAGATGAGGGAGATGATTCCGGGCATTAATATAGAGTCGAAGCATATACAAAATAAGTTGAAGCGTTTGAAAGAAAAGTATTCCTCTGCATATGACATGATGAATACCATTGGTTTTGGTTGGGATGACGAGAAAAAATGTGTTCTTATGGATAGTGACGATAAACATCTTAATGCATCTTGCAAACCAAATAAGCTATTTTTGTTGTATCCACACTTGTCTACGGTGTTTGGGAGAGACCAAGCCATTGGTAGTATGGCTGAATCAGCAGTAGATGCAATCGAAAACATGAGGTTGGAAAATGAGGATTGCGATGAGGCCTCCAAGATGCCTCCGACTTCACCTACCTCATCTCCTTCTGTTGGTACATCCAGTGCATCTCAACCTACTAGGAAAAGGAAAAGGAATAAGAATGATGCCGATGCAAATATTGTAGCTGTTATTTGTGAAGGTTGGGATAAAGCAATTATTGAAATGAAGAATTTAGGTGAAAGTTTTACTTTCGGAGAAGCGAAAGCCAGGTTACCTTCTGAGCTTCAGGCCATGGGTCTCCCATACGATCGATCGAGATGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

215

Amino Acids

23.72

Weight (kDa)

8.15

Isoelectric Point (pI)

58.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000261)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18411 FvH4_1g22560 FvH4_1g24290 FvH4_1g24290 FvH4_1g24290 FvH4_1g29434 FvH4_2g04031 FvH4_2g04811 FvH4_2g07610 FvH4_2g09412 FvH4_3g15552 FvH4_3g30720 FvH4_4g05810 FvH4_4g09541 FvH4_4g15171 FvH4_6g09145 FvH4_6g49541 FvH4_7g00320 FvH4_7g11552
malus_domestica MD00G1072400.v1.1 MD01G1188100.v1.1 MD07G1132000.v1.1 MD08G1190700.v1.1 MD10G1011200.v1.1 MD14G1164100.v1.1 MD15G1289200.v1.1 MD15G1289300.v1.1 MD17G1245100.v1.1
prunus_persica Prupe.6G228600_v2.0.a1
pyrus_communis pycom01g07070 pycom02g06890 pycom02g06900 pycom02g13930 pycom04g07470 pycom04g11770 pycom04g21930 pycom05g08520 pycom06g04490 pycom06g09560 pycom07g03750 pycom08g08760 pycom08g13660 pycom09g11520 pycom09g14250 pycom09g14770 pycom10g00720 pycom10g01290 pycom10g10480 pycom10g15700 pycom12420g00130 pycom12g05380 pycom12g08750 pycom13g19010 pycom13g29080 pycom14g06210 pycom14g13680 pycom14g19850 pycom15g22070 pycom15g23440 pycom15g24950 pycom15g25280 pycom16g11100 pycom16g17080 pycom16g26310 pycom17g15650 pycom17g15670 pycom17g20370
rosa_chinensis RchiOBHm_Chr1g0373591 RchiOBHm_Chr2g0105551 RchiOBHm_Chr2g0106711 RchiOBHm_Chr2g0106721 RchiOBHm_Chr7g0219611
rosa_laevigata RLG00000013773 RLG00000017436 RLG00000017533
rosa_multiflora Rmu_co8001842.1_g000001 Rmu_co8158450.1_g000001 Rmu_sc0000516.1_g000067 Rmu_sc0000566.1_g000009 Rmu_sc0000965.1_g000025 Rmu_sc0001718.1_g000001 Rmu_sc0001719.1_g000020 Rmu_sc0001822.1_g000025 Rmu_sc0002219.1_g000003 Rmu_sc0002460.1_g000059 Rmu_sc0002757.1_g000001 Rmu_sc0002860.1_g000001 Rmu_sc0004531.1_g000001 Rmu_sc0005558.1_g000003 Rmu_sc0011218.1_g000001 Rmu_sc0011998.1_g000003 Rmu_sc0015560.1_g000002 Rmu_sc0015560.1_g000003
rosa_roxburghii Rroxscaffold_1G00004200 Rroxscaffold_1G00026570 Rroxscaffold_1G00040370 Rroxscaffold_1G00044120 Rroxscaffold_1G00049590 Rroxscaffold_1G00059030 Rroxscaffold_2G00108440 Rroxscaffold_2G00108850 Rroxscaffold_2G00130680 Rroxscaffold_2G00132980 Rroxscaffold_2G00136860 Rroxscaffold_3G00218610 Rroxscaffold_4G00309940 Rroxscaffold_6G00405560
rosa_rugosa Rorug02G0138000 Rorug02G0138100 Rorug02G0138100 Rorug06G0154000
rosa_samantha Rh1AG121500 Rh1CG116300 Rh2AG189000 Rh2AG509600 Rh2BG200200 Rh2CG194100 Rh2DG195300 Rh5AG114400 Rh5DG488800
rosa_wichuraiana Rw0G022020 Rw1G023650 Rw1G026380 Rw1G034750 Rw1G040770 Rw2G014870 Rw2G016560 Rw4G031190 Rw5G026570 Rw6G003020 Rw6G012060 Rw7G014300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 290
AcsI RAATTY 2 cut(s) 34, 550
AcuI CTGAAG 1 cut(s) 590
AfaI GTAC 2 cut(s) 49, 436
AfiI CCNNNNNNNGG 2 cut(s) 75, 431
AgsI TTSAA 3 cut(s) 130, 139, 542
AjnI CCWGG 1 cut(s) 587
AluBI AGCT 3 cut(s) 265, 506, 604
AluI AGCT 3 cut(s) 265, 506, 604
Alw26I GTCTC 3 cut(s) 20, 300, 623
AoxI GGCC 2 cut(s) 387, 609
ApoI RAATTY 2 cut(s) 34, 550
AseI ATTAAT 1 cut(s) 96
AsuC2I CCSGG 1 cut(s) 90
AsuHPI GGTGA 2 cut(s) 402, 569
BaeI ACNNNNGTAYC 2 cut(s) 39, 72
BcgI CGANNNNNNTGC 1 cut(s) 621
BciT130I CCWGG 1 cut(s) 589
BciVI GTATCC 1 cut(s) 288
BcnI CCSGG 1 cut(s) 90
BcoDI GTCTC 3 cut(s) 20, 300, 623
BfaI CTAG 2 cut(s) 30, 459
BfuI GTATCC 1 cut(s) 288
Bme1390I CCNGG 2 cut(s) 90, 589
BmrFI CCNGG 2 cut(s) 90, 589
BmsI GCATC 7 cut(s) 254, 334, 387, 455, 475, 481, 629
BpuMI CCSGG 1 cut(s) 90
Bsa29I ATCGAT 1 cut(s) 631
BsaBI GATNNNNATC 1 cut(s) 234
BsaI GGTCTC 2 cut(s) 300, 623
BsaJI CCNNGG 1 cut(s) 612
BsaXI ACNNNNNCTCC 2 cut(s) 406, 436
Bsc4I CCNNNNNNNGG 2 cut(s) 75, 431
Bse1I ACTGG 1 cut(s) 441
Bse8I GATNNNNATC 1 cut(s) 234
BseBI CCWGG 1 cut(s) 589
BseCI ATCGAT 1 cut(s) 631
BseDI CCNNGG 1 cut(s) 612
BseGI GGATG 2 cut(s) 199, 437
BseJI GATNNNNATC 1 cut(s) 234
BseLI CCNNNNNNNGG 2 cut(s) 75, 431
BseMII CTCAG 1 cut(s) 591
BseNI ACTGG 1 cut(s) 441
Bsh1285I CGRYCG 2 cut(s) 631, 635
BshFI GGCC 2 cut(s) 389, 611
BshVI ATCGAT 1 cut(s) 631
BsiEI CGRYCG 2 cut(s) 631, 635
BsiSI CCGG 1 cut(s) 89
BslI CCNNNNNNNGG 2 cut(s) 75, 431
BsmAI GTCTC 3 cut(s) 20, 300, 623
BsnI GGCC 2 cut(s) 389, 611
Bso31I GGTCTC 2 cut(s) 300, 623
Bsp143I GATC 2 cut(s) 628, 632
Bsp19I CCATGG 1 cut(s) 612
BspANI GGCC 2 cut(s) 389, 611
BspCNI CTCAG 1 cut(s) 592
BspDI ATCGAT 1 cut(s) 631
BspTNI GGTCTC 2 cut(s) 300, 623
BsrI ACTGG 1 cut(s) 441
BssECI CCNNGG 1 cut(s) 612
BssMI GATC 2 cut(s) 628, 632
BssT1I CCWWGG 1 cut(s) 612
Bst2UI CCWGG 1 cut(s) 589
Bst4CI ACNGT 1 cut(s) 295
BstAPI GCANNNNNTGC 1 cut(s) 344
BstDEI CTNAG 1 cut(s) 600
BstDSI CCRYGG 1 cut(s) 612
BstEII GGTNACC 1 cut(s) 591
BstF5I GGATG 2 cut(s) 199, 437
BstKTI GATC 2 cut(s) 631, 635
BstMAI GTCTC 3 cut(s) 20, 300, 623
BstMBI GATC 2 cut(s) 628, 632
BstMCI CGRYCG 2 cut(s) 631, 635
BstMWI GCNNNNNNNGC 2 cut(s) 335, 344
BstNI CCWGG 1 cut(s) 589
BstPI GGTNACC 1 cut(s) 591
BstSCI CCNGG 2 cut(s) 88, 587
BstXI CCANNNNNNTGG 1 cut(s) 317
Bsu15I ATCGAT 1 cut(s) 631
BsuI GTATCC 1 cut(s) 288
BsuRI GGCC 2 cut(s) 389, 611
BsuTUI ATCGAT 1 cut(s) 631
BtgI CCRYGG 1 cut(s) 612
BtgZI GCGATG 1 cut(s) 396
BtsCI GGATG 2 cut(s) 199, 437
BtsIMutI CAGTG 1 cut(s) 448
ClaI ATCGAT 1 cut(s) 631
Csp6I GTAC 2 cut(s) 48, 435
CviAII CATG 3 cut(s) 166, 358, 613
CviJI RGCY 9 cut(s) 44, 265, 314, 329, 389, 506, 587, 604, 611
CviKI_1 RGCY 9 cut(s) 44, 265, 314, 329, 389, 506, 587, 604, 611
CviQI GTAC 2 cut(s) 48, 435
DdeI CTNAG 1 cut(s) 600
DpnI GATC 2 cut(s) 630, 634
DpnII GATC 2 cut(s) 628, 632
DraI TTTAAA 1 cut(s) 39
Eco130I CCWWGG 1 cut(s) 612
Eco147I AGGCCT 1 cut(s) 389
Eco31I GGTCTC 2 cut(s) 300, 623
Eco57I CTGAAG 1 cut(s) 590
Eco91I GGTNACC 1 cut(s) 591
EcoO65I GGTNACC 1 cut(s) 591
EcoRII CCWGG 1 cut(s) 587
EcoT14I CCWWGG 1 cut(s) 612
EcoT22I ATGCAT 1 cut(s) 247
ErhI CCWWGG 1 cut(s) 612
FaeI CATG 3 cut(s) 169, 361, 616
FalI AAGNNNNNCTT 2 cut(s) 553, 585
FatI CATG 3 cut(s) 165, 357, 612
FauNDI CATATG 1 cut(s) 160
FblI GTMKAC 1 cut(s) 290
FokI GGATG 2 cut(s) 206, 424
FspBI CTAG 2 cut(s) 30, 459
HaeIII GGCC 2 cut(s) 389, 611
HapII CCGG 1 cut(s) 89
Hin1II CATG 3 cut(s) 169, 361, 616
HinfI GANTC 3 cut(s) 85, 104, 332
HpaII CCGG 1 cut(s) 89
HphI GGTGA 2 cut(s) 402, 569
Hpy166II GTNNAC 1 cut(s) 291
Hpy188I TCNGA 3 cut(s) 405, 575, 601
Hpy188III TCNNGA 1 cut(s) 636
Hpy8I GTNNAC 1 cut(s) 291
HpyAV CCTTC 3 cut(s) 435, 512, 606
HpyCH4III ACNGT 1 cut(s) 295
HpyCH4V TGCA 6 cut(s) 158, 245, 252, 347, 446, 494
HpyF10VI GCNNNNNNNGC 2 cut(s) 335, 344
HpyF3I CTNAG 1 cut(s) 600
Hsp92II CATG 3 cut(s) 169, 361, 616
Kzo9I GATC 2 cut(s) 628, 632
LpnPI CCDG 6 cut(s) 30, 102, 454, 574, 593, 601
LweI GCATC 7 cut(s) 254, 334, 387, 455, 475, 481, 629
MaeI CTAG 2 cut(s) 30, 459
MaeIII GTNAC 2 cut(s) 224, 591
MalI GATC 2 cut(s) 630, 634
MboI GATC 2 cut(s) 628, 632
MboII GAAGA 1 cut(s) 559
MluCI AATT 3 cut(s) 34, 534, 550
MlyI GAGTC 1 cut(s) 113
MmeI TCCRAC 2 cut(s) 345, 428
MnlI CCTC 8 cut(s) 69, 163, 354, 367, 379, 400, 411, 427
Mph1103I ATGCAT 1 cut(s) 247
MseI TTAA 4 cut(s) 18, 38, 96, 240
MslI CAYNNNNRTG 2 cut(s) 71, 240
MspI CCGG 1 cut(s) 89
MspR9I CCNGG 2 cut(s) 90, 589
MvaI CCWGG 1 cut(s) 589
MwoI GCNNNNNNNGC 2 cut(s) 335, 344
NciI CCSGG 1 cut(s) 90
NcoI CCATGG 1 cut(s) 612
NdeI CATATG 1 cut(s) 160
NdeII GATC 2 cut(s) 628, 632
NlaIII CATG 3 cut(s) 169, 361, 616
NmuCI GTSAC 1 cut(s) 224
NsiI ATGCAT 1 cut(s) 247
PceI AGGCCT 1 cut(s) 389
PfeI GAWTC 2 cut(s) 85, 332
Ple19I CGATCG 2 cut(s) 631, 635
PleI GAGTC 1 cut(s) 112
PpsI GAGTC 1 cut(s) 112
PshBI ATTAAT 1 cut(s) 96
Psp6I CCWGG 1 cut(s) 587
PspEI GGTNACC 1 cut(s) 591
PspGI CCWGG 1 cut(s) 587
PvuI CGATCG 2 cut(s) 631, 635
RsaI GTAC 2 cut(s) 49, 436
RsaNI GTAC 2 cut(s) 48, 435
RseI CAYNNNNRTG 2 cut(s) 71, 240
SaqAI TTAA 4 cut(s) 18, 38, 96, 240
Sau3AI GATC 2 cut(s) 628, 632
SchI GAGTC 1 cut(s) 113
ScrFI CCNGG 2 cut(s) 90, 589
SfaNI GCATC 7 cut(s) 254, 334, 387, 455, 475, 481, 629
SmiMI CAYNNNNRTG 2 cut(s) 71, 240
Sse9I AATT 3 cut(s) 34, 534, 550
SseBI AGGCCT 1 cut(s) 389
SspI AATATT 1 cut(s) 499
SspMI CTAG 2 cut(s) 30, 459
StuI AGGCCT 1 cut(s) 389
StyD4I CCNGG 2 cut(s) 88, 587
StyI CCWWGG 1 cut(s) 612
TaaI ACNGT 1 cut(s) 295
TaqI TCGA 4 cut(s) 107, 351, 631, 635
TasI AATT 3 cut(s) 34, 534, 550
TfiI GAWTC 2 cut(s) 85, 332
Tru1I TTAA 4 cut(s) 18, 38, 96, 240
Tru9I TTAA 4 cut(s) 18, 38, 96, 240
TscAI CASTG 1 cut(s) 448
TseFI GTSAC 1 cut(s) 224
Tsp45I GTSAC 1 cut(s) 224
TspDTI ATGAA 2 cut(s) 185, 560
TspRI CASTG 1 cut(s) 448
VspI ATTAAT 1 cut(s) 96
XapI RAATTY 2 cut(s) 34, 550
XcmI CCANNNNNNNNNTGG 1 cut(s) 322
XmiI GTMKAC 1 cut(s) 290
XspI CTAG 2 cut(s) 30, 459
Zsp2I ATGCAT 1 cut(s) 247
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.