Rh2AG509600
MYB Family

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000261
Physical Location & Seq
Forward (+)
73443103 .. 73445716
2614 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG509600.1

Sequence Viewer

Length: 372 bp
ATGTTAAGAAATTATCATTTTTGTTTTCAGCATCACAAGGATGCTGATGGATGGAGGGGGAAACCATTCCCACGTTATGAAACATTTGCTCATATATTTGGAGCGGACCATGCTATTGGAAAGGCTGCCAAAGTATCCGCTGCAATAGTAGAGGAAGTTAATGAAGAGCTTGAAAACCAAGAGCATGCTAATGCATTTGATTCTAAGGTAGAAGCAGACCAACTATCCACTGCTAAATTTGAGTCCACTGCTAAATCCGAGTCTACAAGCACGAGTAGGAGGAGGAAAAGAGAGGATGATGATAAAATAGTTCGTGGCTTAGACAAGTTTGCTGTAACATTCAAAGAAGTGATGCAAACTTCAAATGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

123

Amino Acids

14.07

Weight (kDa)

6.07

Isoelectric Point (pI)

36.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000261)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18411 FvH4_1g22560 FvH4_1g24290 FvH4_1g24290 FvH4_1g24290 FvH4_1g29434 FvH4_2g04031 FvH4_2g04811 FvH4_2g07610 FvH4_2g09412 FvH4_3g15552 FvH4_3g30720 FvH4_4g05810 FvH4_4g09541 FvH4_4g15171 FvH4_6g09145 FvH4_6g49541 FvH4_7g00320 FvH4_7g11552
malus_domestica MD00G1072400.v1.1 MD01G1188100.v1.1 MD07G1132000.v1.1 MD08G1190700.v1.1 MD10G1011200.v1.1 MD14G1164100.v1.1 MD15G1289200.v1.1 MD15G1289300.v1.1 MD17G1245100.v1.1
prunus_persica Prupe.6G228600_v2.0.a1
pyrus_communis pycom01g07070 pycom02g06890 pycom02g06900 pycom02g13930 pycom04g07470 pycom04g11770 pycom04g21930 pycom05g08520 pycom06g04490 pycom06g09560 pycom07g03750 pycom08g08760 pycom08g13660 pycom09g11520 pycom09g14250 pycom09g14770 pycom10g00720 pycom10g01290 pycom10g10480 pycom10g15700 pycom12420g00130 pycom12g05380 pycom12g08750 pycom13g19010 pycom13g29080 pycom14g06210 pycom14g13680 pycom14g19850 pycom15g22070 pycom15g23440 pycom15g24950 pycom15g25280 pycom16g11100 pycom16g17080 pycom16g26310 pycom17g15650 pycom17g15670 pycom17g20370
rosa_chinensis RchiOBHm_Chr1g0373591 RchiOBHm_Chr2g0105551 RchiOBHm_Chr2g0106711 RchiOBHm_Chr2g0106721 RchiOBHm_Chr7g0219611
rosa_laevigata RLG00000013773 RLG00000017436 RLG00000017533
rosa_multiflora Rmu_co8001842.1_g000001 Rmu_co8158450.1_g000001 Rmu_sc0000516.1_g000067 Rmu_sc0000566.1_g000009 Rmu_sc0000965.1_g000025 Rmu_sc0001718.1_g000001 Rmu_sc0001719.1_g000020 Rmu_sc0001822.1_g000025 Rmu_sc0002219.1_g000003 Rmu_sc0002460.1_g000059 Rmu_sc0002757.1_g000001 Rmu_sc0002860.1_g000001 Rmu_sc0004531.1_g000001 Rmu_sc0005558.1_g000003 Rmu_sc0011218.1_g000001 Rmu_sc0011998.1_g000003 Rmu_sc0015560.1_g000002 Rmu_sc0015560.1_g000003
rosa_roxburghii Rroxscaffold_1G00004200 Rroxscaffold_1G00026570 Rroxscaffold_1G00040370 Rroxscaffold_1G00044120 Rroxscaffold_1G00049590 Rroxscaffold_1G00059030 Rroxscaffold_2G00108440 Rroxscaffold_2G00108850 Rroxscaffold_2G00130680 Rroxscaffold_2G00132980 Rroxscaffold_2G00136860 Rroxscaffold_3G00218610 Rroxscaffold_4G00309940 Rroxscaffold_6G00405560
rosa_rugosa Rorug02G0138000 Rorug02G0138100 Rorug02G0138100 Rorug06G0154000
rosa_samantha Rh1AG121500 Rh1CG116300 Rh2AG189000 Rh2AG509600 Rh2BG200200 Rh2CG194100 Rh2DG195300 Rh5AG114400 Rh5DG488800
rosa_wichuraiana Rw0G022020 Rw1G023650 Rw1G026380 Rw1G034750 Rw1G040770 Rw2G014870 Rw2G016560 Rw4G031190 Rw5G026570 Rw6G003020 Rw6G012060 Rw7G014300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 104
AccI GTMKAC 1 cut(s) 263
AciI CCGC 2 cut(s) 104, 138
AcsI RAATTY 1 cut(s) 236
AgsI TTSAA 3 cut(s) 173, 343, 363
AluBI AGCT 1 cut(s) 169
AluI AGCT 1 cut(s) 169
ApeKI GCWGC 2 cut(s) 125, 140
ApoI RAATTY 1 cut(s) 236
Asp700I GAANNNNTTC 1 cut(s) 65
AspS9I GGNCC 1 cut(s) 106
AvaII GGWCC 1 cut(s) 106
BauI CACGAG 1 cut(s) 271
BbvI GCAGC 2 cut(s) 112, 127
BccI CCATC 2 cut(s) 41, 45
BciVI GTATCC 1 cut(s) 145
BfuI GTATCC 1 cut(s) 145
BisI GCNGC 2 cut(s) 126, 141
BlsI GCNGC 2 cut(s) 127, 142
Bme18I GGWCC 1 cut(s) 106
BmgT120I GGNCC 1 cut(s) 106
BmsI GCATC 3 cut(s) 31, 40, 342
BseGI GGATG 3 cut(s) 46, 56, 301
BseRI GAGGAG 1 cut(s) 295
BseXI GCAGC 2 cut(s) 112, 127
BspACI CCGC 2 cut(s) 104, 138
BspQI GCTCTTC 1 cut(s) 159
BsrBI CCGCTC 1 cut(s) 104
BssSI CACGAG 1 cut(s) 271
Bst2BI CACGAG 1 cut(s) 271
Bst6I CTCTTC 1 cut(s) 159
BstC8I GCNNGC 1 cut(s) 186
BstDEI CTNAG 2 cut(s) 204, 319
BstF5I GGATG 3 cut(s) 46, 56, 301
BstMWI GCNNNNNNNGC 1 cut(s) 110
BstNSI RCATGY 1 cut(s) 188
BstV1I GCAGC 2 cut(s) 112, 127
BstXI CCANNNNNNTGG 1 cut(s) 116
BsuI GTATCC 1 cut(s) 145
BtsCI GGATG 3 cut(s) 46, 56, 301
BtsI GCAGTG 2 cut(s) 228, 246
BtsIMutI CAGTG 2 cut(s) 228, 246
Cac8I GCNNGC 1 cut(s) 186
Cfr13I GGNCC 1 cut(s) 106
CviAII CATG 2 cut(s) 110, 185
CviJI RGCY 3 cut(s) 125, 169, 318
CviKI_1 RGCY 3 cut(s) 125, 169, 318
DdeI CTNAG 2 cut(s) 204, 319
Eam1104I CTCTTC 1 cut(s) 159
EarI CTCTTC 1 cut(s) 159
Eco47I GGWCC 1 cut(s) 106
EcoT22I ATGCAT 1 cut(s) 196
FaeI CATG 2 cut(s) 113, 188
FaiI YATR 5 cut(s) 78, 93, 95, 111, 186
FatI CATG 2 cut(s) 109, 184
FblI GTMKAC 1 cut(s) 263
Fnu4HI GCNGC 2 cut(s) 126, 141
FokI GGATG 3 cut(s) 53, 63, 308
Fsp4HI GCNGC 2 cut(s) 126, 141
GluI GCNGC 2 cut(s) 126, 141
Hin1II CATG 2 cut(s) 113, 188
HinfI GANTC 3 cut(s) 200, 242, 260
Hpy166II GTNNAC 2 cut(s) 246, 264
Hpy188I TCNGA 1 cut(s) 259
Hpy8I GTNNAC 2 cut(s) 246, 264
HpyCH4IV ACGT 1 cut(s) 73
HpyCH4V TGCA 3 cut(s) 143, 194, 355
HpyF10VI GCNNNNNNNGC 1 cut(s) 110
HpyF3I CTNAG 2 cut(s) 204, 319
HpySE526I ACGT 1 cut(s) 73
Hsp92II CATG 2 cut(s) 113, 188
LguI GCTCTTC 1 cut(s) 159
LmnI GCTCC 1 cut(s) 101
Lsp1109I GCAGC 2 cut(s) 112, 127
LweI GCATC 3 cut(s) 31, 40, 342
MaeII ACGT 1 cut(s) 73
MaeIII GTNAC 1 cut(s) 334
MbiI CCGCTC 1 cut(s) 104
MboII GAAGA 1 cut(s) 176
MluCI AATT 2 cut(s) 10, 236
MlyI GAGTC 2 cut(s) 251, 269
MnlI CCTC 5 cut(s) 48, 145, 273, 276, 286
Mph1103I ATGCAT 1 cut(s) 196
MroXI GAANNNNTTC 1 cut(s) 65
MseI TTAA 2 cut(s) 5, 159
MslI CAYNNNNRTG 2 cut(s) 39, 189
MspA1I CMGCKG 1 cut(s) 140
MwoI GCNNNNNNNGC 1 cut(s) 110
NlaIII CATG 2 cut(s) 113, 188
NsiI ATGCAT 1 cut(s) 196
NspI RCATGY 1 cut(s) 188
PaeI GCATGC 1 cut(s) 188
PciSI GCTCTTC 1 cut(s) 159
PdmI GAANNNNTTC 1 cut(s) 65
PfeI GAWTC 1 cut(s) 200
PkrI GCNGC 2 cut(s) 127, 142
PleI GAGTC 2 cut(s) 250, 268
PpsI GAGTC 2 cut(s) 250, 268
PspPI GGNCC 1 cut(s) 106
RseI CAYNNNNRTG 2 cut(s) 39, 189
SapI GCTCTTC 1 cut(s) 159
SaqAI TTAA 2 cut(s) 5, 159
SatI GCNGC 2 cut(s) 126, 141
Sau96I GGNCC 1 cut(s) 106
SchI GAGTC 2 cut(s) 251, 269
SetI ASST 3 cut(s) 76, 171, 210
SfaNI GCATC 3 cut(s) 31, 40, 342
SinI GGWCC 1 cut(s) 106
SmiMI CAYNNNNRTG 2 cut(s) 39, 189
SphI GCATGC 1 cut(s) 188
Sse9I AATT 2 cut(s) 10, 236
SsiI CCGC 2 cut(s) 104, 138
TaiI ACGT 1 cut(s) 76
TasI AATT 2 cut(s) 10, 236
TfiI GAWTC 1 cut(s) 200
Tru1I TTAA 2 cut(s) 5, 159
Tru9I TTAA 2 cut(s) 5, 159
TscAI CASTG 2 cut(s) 235, 253
TseI GCWGC 2 cut(s) 125, 140
TspDTI ATGAA 2 cut(s) 93, 177
TspRI CASTG 2 cut(s) 235, 253
VpaK11BI GGWCC 1 cut(s) 106
XapI RAATTY 1 cut(s) 236
XceI RCATGY 1 cut(s) 188
XmiI GTMKAC 1 cut(s) 263
XmnI GAANNNNTTC 1 cut(s) 65
Zsp2I ATGCAT 1 cut(s) 196
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.