MD14G1164100.v1.1
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
OG0000261
Physical Location & Seq
Forward (+)
25799687 .. 25801492
1806 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1164100.v1.1.491

Sequence Viewer

Length: 375 bp
ATGATGTGGTTCATGATGAATCATAATTCAGCTAGAAGGCGGAATCTGCAACTTGCACTTAGAAATTCAAGTACCAAGAAAAGGAAGAGGTCAGCTGCTAATGATAATGATCTTGCTGTGACATTTAAAGAAATGATTTCTGAATCAGTCGATAAGTTGGATGAAATTTTACAAGCTGTTTTTGGGAAAGGAGTGGATTCAAAACCTAAGATTGCTTCAGAATTGTCAAAGATGGATTTGTCTATTGAGGATCAAATCAAGGCACTGATTATCCTTTTTGAAAAGCCACATAATGAGAGGACATTCTTGTCTTTGGATGGTGCAATGAAAAAATCATTCGTACTCATGTTACTTGGACAAAGTAACCGCAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

125

Amino Acids

14.17

Weight (kDa)

9.79

Isoelectric Point (pI)

56.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000261)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18411 FvH4_1g22560 FvH4_1g24290 FvH4_1g24290 FvH4_1g24290 FvH4_1g29434 FvH4_2g04031 FvH4_2g04811 FvH4_2g07610 FvH4_2g09412 FvH4_3g15552 FvH4_3g30720 FvH4_4g05810 FvH4_4g09541 FvH4_4g15171 FvH4_6g09145 FvH4_6g49541 FvH4_7g00320 FvH4_7g11552
malus_domestica MD00G1072400.v1.1 MD01G1188100.v1.1 MD07G1132000.v1.1 MD08G1190700.v1.1 MD10G1011200.v1.1 MD14G1164100.v1.1 MD15G1289200.v1.1 MD15G1289300.v1.1 MD17G1245100.v1.1
prunus_persica Prupe.6G228600_v2.0.a1
pyrus_communis pycom01g07070 pycom02g06890 pycom02g06900 pycom02g13930 pycom04g07470 pycom04g11770 pycom04g21930 pycom05g08520 pycom06g04490 pycom06g09560 pycom07g03750 pycom08g08760 pycom08g13660 pycom09g11520 pycom09g14250 pycom09g14770 pycom10g00720 pycom10g01290 pycom10g10480 pycom10g15700 pycom12420g00130 pycom12g05380 pycom12g08750 pycom13g19010 pycom13g29080 pycom14g06210 pycom14g13680 pycom14g19850 pycom15g22070 pycom15g23440 pycom15g24950 pycom15g25280 pycom16g11100 pycom16g17080 pycom16g26310 pycom17g15650 pycom17g15670 pycom17g20370
rosa_chinensis RchiOBHm_Chr1g0373591 RchiOBHm_Chr2g0105551 RchiOBHm_Chr2g0106711 RchiOBHm_Chr2g0106721 RchiOBHm_Chr7g0219611
rosa_laevigata RLG00000013773 RLG00000017436 RLG00000017533
rosa_multiflora Rmu_co8001842.1_g000001 Rmu_co8158450.1_g000001 Rmu_sc0000516.1_g000067 Rmu_sc0000566.1_g000009 Rmu_sc0000965.1_g000025 Rmu_sc0001718.1_g000001 Rmu_sc0001719.1_g000020 Rmu_sc0001822.1_g000025 Rmu_sc0002219.1_g000003 Rmu_sc0002460.1_g000059 Rmu_sc0002757.1_g000001 Rmu_sc0002860.1_g000001 Rmu_sc0004531.1_g000001 Rmu_sc0005558.1_g000003 Rmu_sc0011218.1_g000001 Rmu_sc0011998.1_g000003 Rmu_sc0015560.1_g000002 Rmu_sc0015560.1_g000003
rosa_roxburghii Rroxscaffold_1G00004200 Rroxscaffold_1G00026570 Rroxscaffold_1G00040370 Rroxscaffold_1G00044120 Rroxscaffold_1G00049590 Rroxscaffold_1G00059030 Rroxscaffold_2G00108440 Rroxscaffold_2G00108850 Rroxscaffold_2G00130680 Rroxscaffold_2G00132980 Rroxscaffold_2G00136860 Rroxscaffold_3G00218610 Rroxscaffold_4G00309940 Rroxscaffold_6G00405560
rosa_rugosa Rorug02G0138000 Rorug02G0138100 Rorug02G0138100 Rorug06G0154000
rosa_samantha Rh1AG121500 Rh1CG116300 Rh2AG189000 Rh2AG509600 Rh2BG200200 Rh2CG194100 Rh2DG195300 Rh5AG114400 Rh5DG488800
rosa_wichuraiana Rw0G022020 Rw1G023650 Rw1G026380 Rw1G034750 Rw1G040770 Rw2G014870 Rw2G016560 Rw4G031190 Rw5G026570 Rw6G003020 Rw6G012060 Rw7G014300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 307
AciI CCGC 2 cut(s) 40, 367
AclWI GGATC 1 cut(s) 258
AcsI RAATTY 2 cut(s) 64, 165
AcuI CTGAAG 1 cut(s) 201
AfaI GTAC 2 cut(s) 73, 342
AfiI CCNNNNNNNGG 1 cut(s) 81
AgsI TTSAA 3 cut(s) 69, 201, 281
AluBI AGCT 3 cut(s) 32, 95, 176
AluI AGCT 3 cut(s) 32, 95, 176
AlwI GGATC 1 cut(s) 258
ApeKI GCWGC 1 cut(s) 95
ApoI RAATTY 2 cut(s) 64, 165
BbvI GCAGC 1 cut(s) 82
BccI CCATC 2 cut(s) 226, 311
BfaI CTAG 1 cut(s) 33
BisI GCNGC 1 cut(s) 96
BlsI GCNGC 1 cut(s) 97
BsaBI GATNNNNATC 1 cut(s) 108
Bsc4I CCNNNNNNNGG 1 cut(s) 81
Bse3DI GCAATG 1 cut(s) 330
Bse8I GATNNNNATC 1 cut(s) 108
BseGI GGATG 2 cut(s) 166, 322
BseJI GATNNNNATC 1 cut(s) 108
BseLI CCNNNNNNNGG 1 cut(s) 81
BseMI GCAATG 1 cut(s) 330
BseXI GCAGC 1 cut(s) 82
BslI CCNNNNNNNGG 1 cut(s) 81
Bsp143I GATC 2 cut(s) 109, 250
BspACI CCGC 2 cut(s) 40, 367
BspHI TCATGA 1 cut(s) 12
BspPI GGATC 1 cut(s) 258
BsrDI GCAATG 1 cut(s) 330
BssMI GATC 2 cut(s) 109, 250
Bst6I CTCTTC 1 cut(s) 80
BstDEI CTNAG 2 cut(s) 59, 207
BstF5I GGATG 2 cut(s) 166, 322
BstKTI GATC 2 cut(s) 112, 253
BstMBI GATC 2 cut(s) 109, 250
BstMWI GCNNNNNNNGC 1 cut(s) 46
BstV1I GCAGC 1 cut(s) 82
BtsCI GGATG 2 cut(s) 166, 322
BtsIMutI CAGTG 1 cut(s) 263
CciI TCATGA 1 cut(s) 12
Csp6I GTAC 2 cut(s) 72, 341
CviAII CATG 2 cut(s) 13, 346
CviJI RGCY 4 cut(s) 32, 95, 176, 286
CviKI_1 RGCY 4 cut(s) 32, 95, 176, 286
CviQI GTAC 2 cut(s) 72, 341
DdeI CTNAG 2 cut(s) 59, 207
DpnI GATC 2 cut(s) 111, 252
DpnII GATC 2 cut(s) 109, 250
DraI TTTAAA 1 cut(s) 127
DrdI GACNNNNNNGTC 1 cut(s) 307
DseDI GACNNNNNNGTC 1 cut(s) 307
Eam1104I CTCTTC 1 cut(s) 80
EarI CTCTTC 1 cut(s) 80
EciI GGCGGA 1 cut(s) 55
Eco57I CTGAAG 1 cut(s) 201
FaeI CATG 2 cut(s) 16, 349
FaiI YATR 4 cut(s) 14, 24, 291, 347
FatI CATG 2 cut(s) 12, 345
Fnu4HI GCNGC 1 cut(s) 96
FokI GGATG 2 cut(s) 173, 329
Fsp4HI GCNGC 1 cut(s) 96
FspBI CTAG 1 cut(s) 33
GluI GCNGC 1 cut(s) 96
Hin1II CATG 2 cut(s) 16, 349
HinfI GANTC 4 cut(s) 19, 43, 143, 197
Hpy188I TCNGA 2 cut(s) 142, 220
Hpy188III TCNNGA 1 cut(s) 13
HpyAV CCTTC 1 cut(s) 30
HpyCH4V TGCA 3 cut(s) 49, 56, 323
HpyF10VI GCNNNNNNNGC 1 cut(s) 46
HpyF3I CTNAG 2 cut(s) 59, 207
Hsp92II CATG 2 cut(s) 16, 349
Kzo9I GATC 2 cut(s) 109, 250
Lsp1109I GCAGC 1 cut(s) 82
MaeI CTAG 1 cut(s) 33
MaeIII GTNAC 3 cut(s) 118, 348, 362
MalI GATC 2 cut(s) 111, 252
MboI GATC 2 cut(s) 109, 250
MboII GAAGA 1 cut(s) 97
MfeI CAATTG 1 cut(s) 370
MluCI AATT 5 cut(s) 25, 64, 165, 221, 370
MmeI TCCRAC 1 cut(s) 138
MnlI CCTC 3 cut(s) 81, 241, 291
MseI TTAA 1 cut(s) 126
MspA1I CMGCKG 1 cut(s) 95
MunI CAATTG 1 cut(s) 370
MwoI GCNNNNNNNGC 1 cut(s) 46
NdeII GATC 2 cut(s) 109, 250
NlaIII CATG 2 cut(s) 16, 349
NmuCI GTSAC 1 cut(s) 118
PagI TCATGA 1 cut(s) 12
PfeI GAWTC 4 cut(s) 19, 43, 143, 197
PkrI GCNGC 1 cut(s) 97
PvuII CAGCTG 1 cut(s) 95
RsaI GTAC 2 cut(s) 73, 342
RsaNI GTAC 2 cut(s) 72, 341
SaqAI TTAA 1 cut(s) 126
SatI GCNGC 1 cut(s) 96
Sau3AI GATC 2 cut(s) 109, 250
SetI ASST 5 cut(s) 34, 92, 97, 178, 208
Sse9I AATT 5 cut(s) 25, 64, 165, 221, 370
SsiI CCGC 2 cut(s) 40, 367
SspMI CTAG 1 cut(s) 33
TaqI TCGA 1 cut(s) 150
TasI AATT 5 cut(s) 25, 64, 165, 221, 370
TfiI GAWTC 4 cut(s) 19, 43, 143, 197
Tru1I TTAA 1 cut(s) 126
Tru9I TTAA 1 cut(s) 126
TscAI CASTG 1 cut(s) 270
TseFI GTSAC 1 cut(s) 118
TseI GCWGC 1 cut(s) 95
Tsp45I GTSAC 1 cut(s) 118
TspDTI ATGAA 3 cut(s) 32, 177, 341
TspRI CASTG 1 cut(s) 270
XapI RAATTY 2 cut(s) 64, 165
XspI CTAG 1 cut(s) 33
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.