Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000261

Physical Location & Seq

Genomic Coordinates Reverse (-)

66900297 .. 66905993

Gene Structure 5697 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00130680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGCATGATGCATTGTTCTCTGCTCTTCCGGACATTGGCCAAGCAGACCAACTATCCACTGCTAAATCTGAGTCCACTTCTAAATCCGAGTCTACAAGCACAAGTAGGAGGAGGAAAAGAGAGGATGATGATAACATAGTTCGTGGCTTAGACAAGTTTGCTGCAACATTCAAAGAAGTGATGCAGACTTCAAATGAGCAGATCCACCTTCTTGTTGAATACTTGCAGCCAAAAGGTAGCAAAAAAGATGAGGGGATTTTACCTGGTAATGAAGAAGTGGCCATGAAGAGGTTGTCAAGAAACTCTAGGCAAGGACAAGTGGAGTTCATGAACGAGTTGAAGGGCTCTGTGATTCTGGGGACACGACTTGACAGGACCTCTGAGCTACACTCCAAAAGGGGACGTCCAGTTCGAGTTCAACAGACGAGGAGGAGAGGGTCTACGGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

149

Amino Acids

16.77

Weight (kDa)

9.84

Isoelectric Point (pI)

60.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000261)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g18411 FvH4_1g22560 FvH4_1g24290 FvH4_1g24290 FvH4_1g24290 FvH4_1g29434 FvH4_2g04031 FvH4_2g04811 FvH4_2g07610 FvH4_2g09412 FvH4_3g15552 FvH4_3g30720 FvH4_4g05810 FvH4_4g09541 FvH4_4g15171 FvH4_6g09145 FvH4_6g49541 FvH4_7g00320 FvH4_7g11552
malus_domestica	MD00G1072400.v1.1 MD01G1188100.v1.1 MD07G1132000.v1.1 MD08G1190700.v1.1 MD10G1011200.v1.1 MD14G1164100.v1.1 MD15G1289200.v1.1 MD15G1289300.v1.1 MD17G1245100.v1.1
prunus_persica	Prupe.6G228600_v2.0.a1
pyrus_communis	pycom01g07070 pycom02g06890 pycom02g06900 pycom02g13930 pycom04g07470 pycom04g11770 pycom04g21930 pycom05g08520 pycom06g04490 pycom06g09560 pycom07g03750 pycom08g08760 pycom08g13660 pycom09g11520 pycom09g14250 pycom09g14770 pycom10g00720 pycom10g01290 pycom10g10480 pycom10g15700 pycom12420g00130 pycom12g05380 pycom12g08750 pycom13g19010 pycom13g29080 pycom14g06210 pycom14g13680 pycom14g19850 pycom15g22070 pycom15g23440 pycom15g24950 pycom15g25280 pycom16g11100 pycom16g17080 pycom16g26310 pycom17g15650 pycom17g15670 pycom17g20370
rosa_chinensis	RchiOBHm_Chr1g0373591 RchiOBHm_Chr2g0105551 RchiOBHm_Chr2g0106711 RchiOBHm_Chr2g0106721 RchiOBHm_Chr7g0219611
rosa_laevigata	RLG00000013773 RLG00000017436 RLG00000017533
rosa_multiflora	Rmu_co8001842.1_g000001 Rmu_co8158450.1_g000001 Rmu_sc0000516.1_g000067 Rmu_sc0000566.1_g000009 Rmu_sc0000965.1_g000025 Rmu_sc0001718.1_g000001 Rmu_sc0001719.1_g000020 Rmu_sc0001822.1_g000025 Rmu_sc0002219.1_g000003 Rmu_sc0002460.1_g000059 Rmu_sc0002757.1_g000001 Rmu_sc0002860.1_g000001 Rmu_sc0004531.1_g000001 Rmu_sc0005558.1_g000003 Rmu_sc0011218.1_g000001 Rmu_sc0011998.1_g000003 Rmu_sc0015560.1_g000002 Rmu_sc0015560.1_g000003
rosa_roxburghii	Rroxscaffold_1G00004200 Rroxscaffold_1G00026570 Rroxscaffold_1G00040370 Rroxscaffold_1G00044120 Rroxscaffold_1G00049590 Rroxscaffold_1G00059030 Rroxscaffold_2G00108440 Rroxscaffold_2G00108850 Rroxscaffold_2G00130680 Rroxscaffold_2G00132980 Rroxscaffold_2G00136860 Rroxscaffold_3G00218610 Rroxscaffold_4G00309940 Rroxscaffold_6G00405560
rosa_rugosa	Rorug02G0138000 Rorug02G0138100 Rorug02G0138100 Rorug06G0154000
rosa_samantha	Rh1AG121500 Rh1CG116300 Rh2AG189000 Rh2AG509600 Rh2BG200200 Rh2CG194100 Rh2DG195300 Rh5AG114400 Rh5DG488800
rosa_wichuraiana	Rw0G022020 Rw1G023650 Rw1G026380 Rw1G034750 Rw1G040770 Rw2G014870 Rw2G016560 Rw4G031190 Rw5G026570 Rw6G003020 Rw6G012060 Rw7G014300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	406
AccI	GTMKAC	2 cut(s)	92, 440
AccIII	TCCGGA	1 cut(s)	28
AclWI	GGATC	1 cut(s)	196
AcoI	YGGCCR	2 cut(s)	37, 279
AcyI	GRCGYC	1 cut(s)	403
AfiI	CCNNNNNNNGG	2 cut(s)	35, 288
AgsI	TTSAA	5 cut(s)	172, 192, 218, 340, 419
AjnI	CCWGG	1 cut(s)	262
AloI	GAACNNNNNNTCC	2 cut(s)	393, 425
AluBI	AGCT	1 cut(s)	385
AluI	AGCT	1 cut(s)	385
AlwI	GGATC	1 cut(s)	196
Aor13HI	TCCGGA	1 cut(s)	28
AoxI	GGCC	2 cut(s)	37, 279
ApeKI	GCWGC	2 cut(s)	161, 226
ArsI	GACNNNNNNTTYG	2 cut(s)	393, 425
AspS9I	GGNCC	1 cut(s)	375
AvaII	GGWCC	1 cut(s)	375
BalI	TGGCCA	2 cut(s)	39, 281
BanII	GRGCYC	1 cut(s)	347
BbvI	GCAGC	2 cut(s)	148, 238
BciT130I	CCWGG	1 cut(s)	264
BfaI	CTAG	1 cut(s)	306
BisI	GCNGC	2 cut(s)	162, 227
BlsI	GCNGC	2 cut(s)	163, 228
Bme1390I	CCNGG	1 cut(s)	264
Bme18I	GGWCC	1 cut(s)	375
BmgT120I	GGNCC	1 cut(s)	375
BmrFI	CCNGG	1 cut(s)	264
BmsI	GCATC	1 cut(s)	171
BplI	GAGNNNNNCTC	2 cut(s)	374, 406
BsaHI	GRCGYC	1 cut(s)	403
BsaWI	WCCGGW	1 cut(s)	28
Bsc4I	CCNNNNNNNGG	2 cut(s)	35, 288
Bse1I	ACTGG	1 cut(s)	407
BseAI	TCCGGA	1 cut(s)	28
BseBI	CCWGG	1 cut(s)	264
BseGI	GGATG	1 cut(s)	130
BseLI	CCNNNNNNNGG	2 cut(s)	35, 288
BseMII	CTCAG	2 cut(s)	60, 372
BseNI	ACTGG	1 cut(s)	407
BseRI	GAGGAG	3 cut(s)	124, 442, 445
BseXI	GCAGC	2 cut(s)	148, 238
BshFI	GGCC	2 cut(s)	39, 281
BsiSI	CCGG	1 cut(s)	29
BslFI	GGGAC	2 cut(s)	373, 414
BslI	CCNNNNNNNGG	2 cut(s)	35, 288
BsmFI	GGGAC	2 cut(s)	373, 414
BsnI	GGCC	2 cut(s)	39, 281
Bsp1286I	GDGCHC	1 cut(s)	347
Bsp13I	TCCGGA	1 cut(s)	28
Bsp143I	GATC	1 cut(s)	201
BspANI	GGCC	2 cut(s)	39, 281
BspCNI	CTCAG	2 cut(s)	61, 373
BspEI	TCCGGA	1 cut(s)	28
BspHI	TCATGA	1 cut(s)	327
BspPI	GGATC	1 cut(s)	196
BspQI	GCTCTTC	1 cut(s)	30
BsrI	ACTGG	1 cut(s)	407
BssMI	GATC	1 cut(s)	201
BssNI	GRCGYC	1 cut(s)	403
Bst2UI	CCWGG	1 cut(s)	264
Bst6I	CTCTTC	2 cut(s)	30, 281
BstACI	GRCGYC	1 cut(s)	403
BstDEI	CTNAG	3 cut(s)	69, 148, 381
BstF5I	GGATG	1 cut(s)	130
BstKTI	GATC	1 cut(s)	204
BstMBI	GATC	1 cut(s)	201
BstNI	CCWGG	1 cut(s)	264
BstSCI	CCNGG	1 cut(s)	262
BstV1I	GCAGC	2 cut(s)	148, 238
BstX2I	RGATCY	1 cut(s)	201
BstYI	RGATCY	1 cut(s)	201
BsuRI	GGCC	2 cut(s)	39, 281
BtsCI	GGATG	1 cut(s)	130
BtsI	GCAGTG	1 cut(s)	57
BtsIMutI	CAGTG	1 cut(s)	57
CciI	TCATGA	1 cut(s)	327
Cfr13I	GGNCC	1 cut(s)	375
CsiI	ACCWGGT	1 cut(s)	262
CviAII	CATG	3 cut(s)	5, 283, 328
CviJI	RGCY	7 cut(s)	39, 147, 229, 281, 345, 385, 446
CviKI_1	RGCY	7 cut(s)	39, 147, 229, 281, 345, 385, 446
DdeI	CTNAG	3 cut(s)	69, 148, 381
DpnI	GATC	1 cut(s)	203
DpnII	GATC	1 cut(s)	201
EaeI	YGGCCR	2 cut(s)	37, 279
Eam1104I	CTCTTC	2 cut(s)	30, 281
EarI	CTCTTC	2 cut(s)	30, 281
Eco24I	GRGCYC	1 cut(s)	347
Eco47I	GGWCC	1 cut(s)	375
EcoO109I	RGGNCCY	1 cut(s)	375
EcoRII	CCWGG	1 cut(s)	262
EcoT22I	ATGCAT	2 cut(s)	6, 13
EcoT38I	GRGCYC	1 cut(s)	347
FaeI	CATG	3 cut(s)	8, 286, 331
FaiI	YATR	4 cut(s)	6, 137, 284, 329
FaqI	GGGAC	2 cut(s)	373, 414
FatI	CATG	3 cut(s)	4, 282, 327
FblI	GTMKAC	2 cut(s)	92, 440
Fnu4HI	GCNGC	2 cut(s)	162, 227
FokI	GGATG	1 cut(s)	137
FriOI	GRGCYC	1 cut(s)	347
Fsp4HI	GCNGC	2 cut(s)	162, 227
FspBI	CTAG	1 cut(s)	306
GluI	GCNGC	2 cut(s)	162, 227
HaeIII	GGCC	2 cut(s)	39, 281
HapII	CCGG	1 cut(s)	29
Hin1I	GRCGYC	1 cut(s)	403
Hin1II	CATG	3 cut(s)	8, 286, 331
HinfI	GANTC	3 cut(s)	71, 89, 352
HpaII	CCGG	1 cut(s)	29
Hpy166II	GTNNAC	3 cut(s)	75, 93, 441
Hpy188I	TCNGA	3 cut(s)	70, 88, 382
Hpy188III	TCNNGA	3 cut(s)	29, 297, 328
Hpy8I	GTNNAC	3 cut(s)	75, 93, 441
HpyAV	CCTTC	2 cut(s)	218, 334
HpyCH4IV	ACGT	1 cut(s)	403
HpyCH4V	TGCA	5 cut(s)	4, 11, 164, 184, 226
HpyF3I	CTNAG	3 cut(s)	69, 148, 381
HpySE526I	ACGT	1 cut(s)	403
Hsp92I	GRCGYC	1 cut(s)	403
Hsp92II	CATG	3 cut(s)	8, 286, 331
Kpn2I	TCCGGA	1 cut(s)	28
Kzo9I	GATC	1 cut(s)	201
LguI	GCTCTTC	1 cut(s)	30
LpnPI	CCDG	6 cut(s)	42, 249, 276, 341, 358, 420
Lsp1109I	GCAGC	2 cut(s)	148, 238
LweI	GCATC	1 cut(s)	171
MabI	ACCWGGT	1 cut(s)	262
MaeI	CTAG	1 cut(s)	306
MaeII	ACGT	1 cut(s)	403
MalI	GATC	1 cut(s)	203
MboI	GATC	1 cut(s)	201
MboII	GAAGA	3 cut(s)	17, 284, 298
MflI	RGATCY	1 cut(s)	201
MhlI	GDGCHC	1 cut(s)	347
MlsI	TGGCCA	2 cut(s)	39, 281
MluNI	TGGCCA	2 cut(s)	39, 281
MlyI	GAGTC	2 cut(s)	80, 98
MnlI	CCTC	9 cut(s)	102, 105, 115, 244, 282, 388, 420, 423, 428
Mox20I	TGGCCA	2 cut(s)	39, 281
Mph1103I	ATGCAT	2 cut(s)	6, 13
MroI	TCCGGA	1 cut(s)	28
MscI	TGGCCA	2 cut(s)	39, 281
MseI	TTAA	1 cut(s)	448
Msp20I	TGGCCA	2 cut(s)	39, 281
MspI	CCGG	1 cut(s)	29
MspR9I	CCNGG	1 cut(s)	264
MvaI	CCWGG	1 cut(s)	264
NdeII	GATC	1 cut(s)	201
NlaIII	CATG	3 cut(s)	8, 286, 331
NsiI	ATGCAT	2 cut(s)	6, 13
PagI	TCATGA	1 cut(s)	327
PciSI	GCTCTTC	1 cut(s)	30
PcsI	WCGNNNNNNNCGW	1 cut(s)	409
PfeI	GAWTC	1 cut(s)	352
PkrI	GCNGC	2 cut(s)	163, 228
PleI	GAGTC	2 cut(s)	79, 97
PpsI	GAGTC	2 cut(s)	79, 97
PpuMI	RGGWCCY	1 cut(s)	375
Psp5II	RGGWCCY	1 cut(s)	375
Psp6I	CCWGG	1 cut(s)	262
PspGI	CCWGG	1 cut(s)	262
PspPI	GGNCC	1 cut(s)	375
PspPPI	RGGWCCY	1 cut(s)	375
PsuI	RGATCY	1 cut(s)	201
SapI	GCTCTTC	1 cut(s)	30
SaqAI	TTAA	1 cut(s)	448
SatI	GCNGC	2 cut(s)	162, 227
Sau3AI	GATC	1 cut(s)	201
Sau96I	GGNCC	1 cut(s)	375
SchI	GAGTC	2 cut(s)	80, 98
ScrFI	CCNGG	1 cut(s)	264
SduI	GDGCHC	1 cut(s)	347
SetI	ASST	7 cut(s)	210, 238, 265, 293, 380, 387, 406
SexAI	ACCWGGT	1 cut(s)	262
SfaNI	GCATC	1 cut(s)	171
SinI	GGWCC	1 cut(s)	375
SspMI	CTAG	1 cut(s)	306
StyD4I	CCNGG	1 cut(s)	262
TaiI	ACGT	1 cut(s)	406
TaqI	TCGA	1 cut(s)	412
TfiI	GAWTC	1 cut(s)	352
Tru1I	TTAA	1 cut(s)	448
Tru9I	TTAA	1 cut(s)	448
TscAI	CASTG	1 cut(s)	64
TseI	GCWGC	2 cut(s)	161, 226
TspDTI	ATGAA	4 cut(s)	285, 299, 316, 344
TspRI	CASTG	1 cut(s)	64
VpaK11BI	GGWCC	1 cut(s)	375
XmiI	GTMKAC	2 cut(s)	92, 440
XspI	CTAG	1 cut(s)	306
ZraI	GACGTC	1 cut(s)	404
Zsp2I	ATGCAT	2 cut(s)	6, 13

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.