pycom10g01290
MYB Family

nuclease activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0000261
Physical Location & Seq
Reverse (-)
1353548 .. 1353931
384 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g01290.1

Sequence Viewer

Length: 384 bp
ATGAGCCTGAGCACATTAATGAAGATGAAGATGAGGCGAAGACTAGTTCACCCTCTGTTGCTCGACGGTCCAGTAGTTCAAGTACCCGGAAAAGGAAGAGAGCTGCTAATGATAATGATCTTGCTGTGGCATTTAAAGAAACGCTTTCTGAATCAGTTGAGAAGTTGGGTGAAGTTTTACAAGTTGCTTTTGGGAAAGGAGTGGATCCAAAACCTGAGATTGTTTCAGAATTGTCAAAGATGGATTTGTCTATTGATGGATCAAATCAAGGCACTAAATATCCTTTTCGAAAAGCCACAGAATGAGAGGACATTCTTGTTTTTGGATGGTGCAATGAAAAAAGCCTTTGTACTCATGTTACTTGGACAAAGTAACCCCAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4 Myb_DNA-bind_3

Protein Analysis

128

Amino Acids

15.17

Weight (kDa)

10.66

Isoelectric Point (pI)

53.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000261)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18411 FvH4_1g22560 FvH4_1g24290 FvH4_1g24290 FvH4_1g24290 FvH4_1g29434 FvH4_2g04031 FvH4_2g04811 FvH4_2g07610 FvH4_2g09412 FvH4_3g15552 FvH4_3g30720 FvH4_4g05810 FvH4_4g09541 FvH4_4g15171 FvH4_6g09145 FvH4_6g49541 FvH4_7g00320 FvH4_7g11552
malus_domestica MD00G1072400.v1.1 MD01G1188100.v1.1 MD07G1132000.v1.1 MD08G1190700.v1.1 MD10G1011200.v1.1 MD14G1164100.v1.1 MD15G1289200.v1.1 MD15G1289300.v1.1 MD17G1245100.v1.1
prunus_persica Prupe.6G228600_v2.0.a1
pyrus_communis pycom01g07070 pycom02g06890 pycom02g06900 pycom02g13930 pycom04g07470 pycom04g11770 pycom04g21930 pycom05g08520 pycom06g04490 pycom06g09560 pycom07g03750 pycom08g08760 pycom08g13660 pycom09g11520 pycom09g14250 pycom09g14770 pycom10g00720 pycom10g01290 pycom10g10480 pycom10g15700 pycom12420g00130 pycom12g05380 pycom12g08750 pycom13g19010 pycom13g29080 pycom14g06210 pycom14g13680 pycom14g19850 pycom15g22070 pycom15g23440 pycom15g24950 pycom15g25280 pycom16g11100 pycom16g17080 pycom16g26310 pycom17g15650 pycom17g15670 pycom17g20370
rosa_chinensis RchiOBHm_Chr1g0373591 RchiOBHm_Chr2g0105551 RchiOBHm_Chr2g0106711 RchiOBHm_Chr2g0106721 RchiOBHm_Chr7g0219611
rosa_laevigata RLG00000013773 RLG00000017436 RLG00000017533
rosa_multiflora Rmu_co8001842.1_g000001 Rmu_co8158450.1_g000001 Rmu_sc0000516.1_g000067 Rmu_sc0000566.1_g000009 Rmu_sc0000965.1_g000025 Rmu_sc0001718.1_g000001 Rmu_sc0001719.1_g000020 Rmu_sc0001822.1_g000025 Rmu_sc0002219.1_g000003 Rmu_sc0002460.1_g000059 Rmu_sc0002757.1_g000001 Rmu_sc0002860.1_g000001 Rmu_sc0004531.1_g000001 Rmu_sc0005558.1_g000003 Rmu_sc0011218.1_g000001 Rmu_sc0011998.1_g000003 Rmu_sc0015560.1_g000002 Rmu_sc0015560.1_g000003
rosa_roxburghii Rroxscaffold_1G00004200 Rroxscaffold_1G00026570 Rroxscaffold_1G00040370 Rroxscaffold_1G00044120 Rroxscaffold_1G00049590 Rroxscaffold_1G00059030 Rroxscaffold_2G00108440 Rroxscaffold_2G00108850 Rroxscaffold_2G00130680 Rroxscaffold_2G00132980 Rroxscaffold_2G00136860 Rroxscaffold_3G00218610 Rroxscaffold_4G00309940 Rroxscaffold_6G00405560
rosa_rugosa Rorug02G0138000 Rorug02G0138100 Rorug02G0138100 Rorug06G0154000
rosa_samantha Rh1AG121500 Rh1CG116300 Rh2AG189000 Rh2AG509600 Rh2BG200200 Rh2CG194100 Rh2DG195300 Rh5AG114400 Rh5DG488800
rosa_wichuraiana Rw0G022020 Rw1G023650 Rw1G026380 Rw1G034750 Rw1G040770 Rw2G014870 Rw2G016560 Rw4G031190 Rw5G026570 Rw6G003020 Rw6G012060 Rw7G014300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 199, 212, 267
AfaI GTAC 2 cut(s) 84, 351
AfiI CCNNNNNNNGG 1 cut(s) 92
AgsI TTSAA 1 cut(s) 80
AhlI ACTAGT 1 cut(s) 43
AluBI AGCT 1 cut(s) 103
AluI AGCT 1 cut(s) 103
Alw21I GWGCWC 1 cut(s) 14
AlwI GGATC 3 cut(s) 199, 212, 267
ApeKI GCWGC 1 cut(s) 103
AseI ATTAAT 1 cut(s) 17
AspS9I GGNCC 1 cut(s) 68
AsuC2I CCSGG 1 cut(s) 87
AsuHPI GGTGA 2 cut(s) 41, 181
AsuII TTCGAA 1 cut(s) 288
AvaII GGWCC 1 cut(s) 68
BamHI GGATCC 1 cut(s) 204
BbsI GAAGAC 1 cut(s) 46
Bbv12I GWGCWC 1 cut(s) 14
BbvI GCAGC 1 cut(s) 90
BccI CCATC 3 cut(s) 234, 250, 320
BcnI CCSGG 1 cut(s) 87
BcuI ACTAGT 1 cut(s) 43
BfaI CTAG 1 cut(s) 44
BisI GCNGC 1 cut(s) 104
BlsI GCNGC 1 cut(s) 105
Bme1390I CCNGG 1 cut(s) 87
Bme18I GGWCC 1 cut(s) 68
BmgT120I GGNCC 1 cut(s) 68
BmiI GGNNCC 1 cut(s) 206
BmrFI CCNGG 1 cut(s) 87
BpiI GAAGAC 1 cut(s) 46
Bpu10I CCTNAGC 1 cut(s) 8
Bpu14I TTCGAA 1 cut(s) 288
BpuMI CCSGG 1 cut(s) 87
BsaBI GATNNNNATC 1 cut(s) 116
Bsc4I CCNNNNNNNGG 1 cut(s) 92
Bse1I ACTGG 1 cut(s) 71
Bse3DI GCAATG 1 cut(s) 339
Bse8I GATNNNNATC 1 cut(s) 116
BseGI GGATG 1 cut(s) 331
BseJI GATNNNNATC 1 cut(s) 116
BseLI CCNNNNNNNGG 1 cut(s) 92
BseMI GCAATG 1 cut(s) 339
BseMII CTCAG 1 cut(s) 206
BseNI ACTGG 1 cut(s) 71
BseXI GCAGC 1 cut(s) 90
BsiHKAI GWGCWC 1 cut(s) 14
BsiSI CCGG 1 cut(s) 87
BslI CCNNNNNNNGG 1 cut(s) 92
Bsp119I TTCGAA 1 cut(s) 288
Bsp1286I GDGCHC 1 cut(s) 14
Bsp143I GATC 3 cut(s) 117, 204, 259
BspCNI CTCAG 1 cut(s) 207
BspLI GGNNCC 1 cut(s) 206
BspPI GGATC 3 cut(s) 199, 212, 267
BspT104I TTCGAA 1 cut(s) 288
BsrDI GCAATG 1 cut(s) 339
BsrI ACTGG 1 cut(s) 71
BssMI GATC 3 cut(s) 117, 204, 259
Bst4CI ACNGT 1 cut(s) 68
Bst6I CTCTTC 1 cut(s) 91
BstBI TTCGAA 1 cut(s) 288
BstDEI CTNAG 2 cut(s) 8, 215
BstF5I GGATG 1 cut(s) 331
BstKTI GATC 3 cut(s) 120, 207, 262
BstMBI GATC 3 cut(s) 117, 204, 259
BstSCI CCNGG 1 cut(s) 85
BstV1I GCAGC 1 cut(s) 90
BstV2I GAAGAC 1 cut(s) 46
BstX2I RGATCY 1 cut(s) 204
BstYI RGATCY 1 cut(s) 204
BtsCI GGATG 1 cut(s) 331
Cfr13I GGNCC 1 cut(s) 68
Csp6I GTAC 2 cut(s) 83, 350
CviAII CATG 1 cut(s) 355
CviJI RGCY 4 cut(s) 6, 103, 295, 344
CviKI_1 RGCY 4 cut(s) 6, 103, 295, 344
CviQI GTAC 2 cut(s) 83, 350
DdeI CTNAG 2 cut(s) 8, 215
DpnI GATC 3 cut(s) 119, 206, 261
DpnII GATC 3 cut(s) 117, 204, 259
DraI TTTAAA 1 cut(s) 135
Eam1104I CTCTTC 1 cut(s) 91
EarI CTCTTC 1 cut(s) 91
Eco47I GGWCC 1 cut(s) 68
FaeI CATG 1 cut(s) 358
FaiI YATR 1 cut(s) 356
FalI AAGNNNNNCTT 2 cut(s) 128, 160
FatI CATG 1 cut(s) 354
Fnu4HI GCNGC 1 cut(s) 104
FokI GGATG 1 cut(s) 338
Fsp4HI GCNGC 1 cut(s) 104
FspBI CTAG 1 cut(s) 44
GluI GCNGC 1 cut(s) 104
HapII CCGG 1 cut(s) 87
Hin1II CATG 1 cut(s) 358
HinfI GANTC 1 cut(s) 151
HpaII CCGG 1 cut(s) 87
HphI GGTGA 2 cut(s) 41, 181
Hpy166II GTNNAC 1 cut(s) 49
Hpy188I TCNGA 2 cut(s) 150, 228
Hpy8I GTNNAC 1 cut(s) 49
Hpy99I CGWCG 1 cut(s) 68
HpyCH4III ACNGT 1 cut(s) 68
HpyCH4V TGCA 1 cut(s) 332
HpyF3I CTNAG 2 cut(s) 8, 215
Hsp92II CATG 1 cut(s) 358
Kzo9I GATC 3 cut(s) 117, 204, 259
LpnPI CCDG 4 cut(s) 20, 84, 100, 227
Lsp1109I GCAGC 1 cut(s) 90
MaeI CTAG 1 cut(s) 44
MaeIII GTNAC 2 cut(s) 357, 371
MalI GATC 3 cut(s) 119, 206, 261
MboI GATC 3 cut(s) 117, 204, 259
MboII GAAGA 4 cut(s) 34, 40, 51, 108
MfeI CAATTG 1 cut(s) 379
MflI RGATCY 1 cut(s) 204
MhlI GDGCHC 1 cut(s) 14
MluCI AATT 2 cut(s) 229, 379
MnlI CCTC 3 cut(s) 27, 63, 300
MseI TTAA 2 cut(s) 17, 134
MslI CAYNNNNRTG 1 cut(s) 17
MspI CCGG 1 cut(s) 87
MspR9I CCNGG 1 cut(s) 87
MunI CAATTG 1 cut(s) 379
NciI CCSGG 1 cut(s) 87
NdeII GATC 3 cut(s) 117, 204, 259
NlaIII CATG 1 cut(s) 358
NlaIV GGNNCC 1 cut(s) 206
NspV TTCGAA 1 cut(s) 288
PfeI GAWTC 1 cut(s) 151
PkrI GCNGC 1 cut(s) 105
PshBI ATTAAT 1 cut(s) 17
PspN4I GGNNCC 1 cut(s) 206
PspPI GGNCC 1 cut(s) 68
PsuI RGATCY 1 cut(s) 204
RsaI GTAC 2 cut(s) 84, 351
RsaNI GTAC 2 cut(s) 83, 350
RseI CAYNNNNRTG 1 cut(s) 17
SaqAI TTAA 2 cut(s) 17, 134
SatI GCNGC 1 cut(s) 104
Sau3AI GATC 3 cut(s) 117, 204, 259
Sau96I GGNCC 1 cut(s) 68
ScrFI CCNGG 1 cut(s) 87
SduI GDGCHC 1 cut(s) 14
SetI ASST 2 cut(s) 105, 216
SfuI TTCGAA 1 cut(s) 288
SinI GGWCC 1 cut(s) 68
SmiMI CAYNNNNRTG 1 cut(s) 17
SpeI ACTAGT 1 cut(s) 43
Sse9I AATT 2 cut(s) 229, 379
SspMI CTAG 1 cut(s) 44
StyD4I CCNGG 1 cut(s) 85
TaaI ACNGT 1 cut(s) 68
TaqI TCGA 2 cut(s) 63, 288
TasI AATT 2 cut(s) 229, 379
TatI WGTACW 1 cut(s) 349
TfiI GAWTC 1 cut(s) 151
Tru1I TTAA 2 cut(s) 17, 134
Tru9I TTAA 2 cut(s) 17, 134
TseI GCWGC 1 cut(s) 103
TspDTI ATGAA 3 cut(s) 35, 41, 350
VpaK11BI GGWCC 1 cut(s) 68
VspI ATTAAT 1 cut(s) 17
XspI CTAG 1 cut(s) 44
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.