pycom17g15650
MYB Family

Myb/SANT-like DNA-binding domain

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
Physical Location & Seq
Reverse (-)
13691553 .. 13692461
909 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g15650.1

Sequence Viewer

Length: 834 bp
ATGGCCACCTCACGTAATTGGATCGATCATGAGAAGGATGTACTACTTACCATCCTCAAGGAGATGGTTGCTGATGGTGTTAGGTGTGAGACTGGCAGTTTTAAGGCTGATACTTTTGTAACGGTTGCCTCCAAGATGAGGGAACAAATTCCTGGCATTAATATAGAGCCAAAGCATATACAAAACAAATTGAAGCGTCTGAAAGAAAAGTATTCGTCTGCATATGACATGATGAATGCATCTGGATTTGGTTGGGATAATGAGAAAAAATGTGTTGTTGTGGATAATGACGAAATACTACAGGAGTGGGTGAAGAAACATCCCAATGCATCTTGCAAACTAAATAAGCCATTCCCGTTGTATCAACGGTTATGTACGGTGTTTGGGAGAGACCGAGCCACGGGTAGTATGGCTGAATCAGCAGCAGATGCAATCAAAAATATGGGTTTGGAAAGTGAGGATTGTGAGACTTCCGAGATGCCTCTGCTTTCACCCACCCCATCTCCTTCTGTTGCTACATCTAGTGCTTCTCAACCTGTTAGGAAGAGGAAGAGGAAGAGGAGTAGGAATGATGGTGATGCAAATATTGTACCTGTTATTAGTGAAGGTTGGAATAAAGCTGTTACCGAAATGAAGAAATTAGGTGAAAGTTTTACTTTTAGAGAAGCGAAAGCTAGACTACCTTCTGAGCTTCAGGCCATGGGTCTTCCATACGATCAGGTGCTAAGAATTTCAATGAAGTTAGTGAAAGATACTGATTTGATGGGTATTTGGACCACCTTGGATGACTCACAGAAGCCAGATTTCATTAAAGTGTTTATGGAGAGCCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

278

Amino Acids

31.22

Weight (kDa)

8.47

Isoelectric Point (pI)

52.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 5 - 85 1.6e-08 Myb/SANT-like DNA-binding domain
Myb_DNA-bind_3 PF12776 7 - 96 2.7e-11 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000261)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18411 FvH4_1g22560 FvH4_1g24290 FvH4_1g24290 FvH4_1g24290 FvH4_1g29434 FvH4_2g04031 FvH4_2g04811 FvH4_2g07610 FvH4_2g09412 FvH4_3g15552 FvH4_3g30720 FvH4_4g05810 FvH4_4g09541 FvH4_4g15171 FvH4_6g09145 FvH4_6g49541 FvH4_7g00320 FvH4_7g11552
malus_domestica MD00G1072400.v1.1 MD01G1188100.v1.1 MD07G1132000.v1.1 MD08G1190700.v1.1 MD10G1011200.v1.1 MD14G1164100.v1.1 MD15G1289200.v1.1 MD15G1289300.v1.1 MD17G1245100.v1.1
prunus_persica Prupe.6G228600_v2.0.a1
pyrus_communis pycom01g07070 pycom02g06890 pycom02g06900 pycom02g13930 pycom04g07470 pycom04g11770 pycom04g21930 pycom05g08520 pycom06g04490 pycom06g09560 pycom07g03750 pycom08g08760 pycom08g13660 pycom09g11520 pycom09g14250 pycom09g14770 pycom10g00720 pycom10g01290 pycom10g10480 pycom10g15700 pycom12420g00130 pycom12g05380 pycom12g08750 pycom13g19010 pycom13g29080 pycom14g06210 pycom14g13680 pycom14g19850 pycom15g22070 pycom15g23440 pycom15g24950 pycom15g25280 pycom16g11100 pycom16g17080 pycom16g26310 pycom17g15650 pycom17g15670 pycom17g20370
rosa_chinensis RchiOBHm_Chr1g0373591 RchiOBHm_Chr2g0105551 RchiOBHm_Chr2g0106711 RchiOBHm_Chr2g0106721 RchiOBHm_Chr7g0219611
rosa_laevigata RLG00000013773 RLG00000017436 RLG00000017533
rosa_multiflora Rmu_co8001842.1_g000001 Rmu_co8158450.1_g000001 Rmu_sc0000516.1_g000067 Rmu_sc0000566.1_g000009 Rmu_sc0000965.1_g000025 Rmu_sc0001718.1_g000001 Rmu_sc0001719.1_g000020 Rmu_sc0001822.1_g000025 Rmu_sc0002219.1_g000003 Rmu_sc0002460.1_g000059 Rmu_sc0002757.1_g000001 Rmu_sc0002860.1_g000001 Rmu_sc0004531.1_g000001 Rmu_sc0005558.1_g000003 Rmu_sc0011218.1_g000001 Rmu_sc0011998.1_g000003 Rmu_sc0015560.1_g000002 Rmu_sc0015560.1_g000003
rosa_roxburghii Rroxscaffold_1G00004200 Rroxscaffold_1G00026570 Rroxscaffold_1G00040370 Rroxscaffold_1G00044120 Rroxscaffold_1G00049590 Rroxscaffold_1G00059030 Rroxscaffold_2G00108440 Rroxscaffold_2G00108850 Rroxscaffold_2G00130680 Rroxscaffold_2G00132980 Rroxscaffold_2G00136860 Rroxscaffold_3G00218610 Rroxscaffold_4G00309940 Rroxscaffold_6G00405560
rosa_rugosa Rorug02G0138000 Rorug02G0138100 Rorug02G0138100 Rorug06G0154000
rosa_samantha Rh1AG121500 Rh1CG116300 Rh2AG189000 Rh2AG509600 Rh2BG200200 Rh2CG194100 Rh2DG195300 Rh5AG114400 Rh5DG488800
rosa_wichuraiana Rw0G022020 Rw1G023650 Rw1G026380 Rw1G034750 Rw1G040770 Rw2G014870 Rw2G016560 Rw4G031190 Rw5G026570 Rw6G003020 Rw6G012060 Rw7G014300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 29
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 2 cut(s) 147, 729
AcuI CTGAAG 1 cut(s) 677
AfaI GTAC 3 cut(s) 42, 376, 591
AfiI CCNNNNNNNGG 2 cut(s) 138, 400
AgsI TTSAA 2 cut(s) 193, 735
AjnI CCWGG 1 cut(s) 151
AluBI AGCT 3 cut(s) 620, 674, 691
AluI AGCT 3 cut(s) 620, 674, 691
Alw26I GTCTC 3 cut(s) 83, 384, 461
AlwI GGATC 1 cut(s) 29
AoxI GGCC 2 cut(s) 3, 696
ApeKI GCWGC 1 cut(s) 422
ApoI RAATTY 2 cut(s) 147, 729
AseI ATTAAT 1 cut(s) 159
Asp700I GAANNNNTTC 1 cut(s) 147
AspS9I GGNCC 1 cut(s) 774
AsuHPI GGTGA 4 cut(s) 322, 483, 587, 656
AvaII GGWCC 1 cut(s) 774
BaeI ACNNNNGTAYC 2 cut(s) 102, 135
BalI TGGCCA 1 cut(s) 5
BbsI GAAGAC 1 cut(s) 698
BbvI GCAGC 1 cut(s) 434
BccI CCATC 6 cut(s) 58, 59, 68, 508, 566, 757
BciT130I CCWGG 1 cut(s) 153
BcoDI GTCTC 3 cut(s) 83, 384, 461
BfaI CTAG 2 cut(s) 522, 675
BfmI CTRYAG 1 cut(s) 299
BisI GCNGC 1 cut(s) 423
BlsI GCNGC 1 cut(s) 424
Bme1390I CCNGG 1 cut(s) 153
Bme18I GGWCC 1 cut(s) 774
BmgT120I GGNCC 1 cut(s) 774
BmrFI CCNGG 1 cut(s) 153
BmsI GCATC 5 cut(s) 248, 338, 418, 468, 568
BpiI GAAGAC 1 cut(s) 698
BpuEI CTTGAG 1 cut(s) 41
Bsa29I ATCGAT 1 cut(s) 24
BsaAI YACGTR 1 cut(s) 14
BsaI GGTCTC 1 cut(s) 384
BsaJI CCNNGG 3 cut(s) 399, 699, 780
BsaXI ACNNNNNCTCC 2 cut(s) 487, 517
Bsc4I CCNNNNNNNGG 2 cut(s) 138, 400
Bse1I ACTGG 1 cut(s) 97
BseBI CCWGG 1 cut(s) 153
BseCI ATCGAT 1 cut(s) 24
BseDI CCNNGG 3 cut(s) 399, 699, 780
BseGI GGATG 4 cut(s) 43, 51, 319, 790
BseLI CCNNNNNNNGG 2 cut(s) 138, 400
BseMII CTCAG 1 cut(s) 678
BseNI ACTGG 1 cut(s) 97
BseRI GAGGAG 1 cut(s) 574
BseXI GCAGC 1 cut(s) 434
BshFI GGCC 2 cut(s) 5, 698
BshVI ATCGAT 1 cut(s) 24
BslI CCNNNNNNNGG 2 cut(s) 138, 400
BsmAI GTCTC 3 cut(s) 83, 384, 461
BsmI GAATGC 1 cut(s) 241
BsnI GGCC 2 cut(s) 5, 698
Bso31I GGTCTC 1 cut(s) 384
Bsp143I GATC 3 cut(s) 21, 25, 715
Bsp19I CCATGG 1 cut(s) 699
BspANI GGCC 2 cut(s) 5, 698
BspCNI CTCAG 1 cut(s) 679
BspDI ATCGAT 1 cut(s) 24
BspHI TCATGA 1 cut(s) 28
BspPI GGATC 1 cut(s) 29
BspTNI GGTCTC 1 cut(s) 384
BsrI ACTGG 1 cut(s) 97
BssECI CCNNGG 3 cut(s) 399, 699, 780
BssMI GATC 3 cut(s) 21, 25, 715
BssT1I CCWWGG 2 cut(s) 699, 780
Bst2UI CCWGG 1 cut(s) 153
Bst4CI ACNGT 3 cut(s) 124, 369, 379
Bst6I CTCTTC 3 cut(s) 539, 545, 551
BstAPI GCANNNNNTGC 1 cut(s) 428
BstBAI YACGTR 1 cut(s) 14
BstDEI CTNAG 2 cut(s) 687, 725
BstDSI CCRYGG 2 cut(s) 399, 699
BstF5I GGATG 4 cut(s) 43, 51, 319, 790
BstKTI GATC 3 cut(s) 24, 28, 718
BstMAI GTCTC 3 cut(s) 83, 384, 461
BstMBI GATC 3 cut(s) 21, 25, 715
BstMWI GCNNNNNNNGC 2 cut(s) 419, 428
BstNI CCWGG 1 cut(s) 153
BstSCI CCNGG 1 cut(s) 151
BstSFI CTRYAG 1 cut(s) 299
BstV1I GCAGC 1 cut(s) 434
BstV2I GAAGAC 1 cut(s) 698
Bsu15I ATCGAT 1 cut(s) 24
BsuRI GGCC 2 cut(s) 5, 698
BsuTUI ATCGAT 1 cut(s) 24
BtgI CCRYGG 2 cut(s) 399, 699
BtsCI GGATG 4 cut(s) 43, 51, 319, 790
CciI TCATGA 1 cut(s) 28
Cfr13I GGNCC 1 cut(s) 774
ClaI ATCGAT 1 cut(s) 24
CseI GACGC 1 cut(s) 185
Csp6I GTAC 3 cut(s) 41, 375, 590
CviAII CATG 3 cut(s) 29, 229, 700
CviQI GTAC 3 cut(s) 41, 375, 590
DdeI CTNAG 2 cut(s) 687, 725
DpnI GATC 3 cut(s) 23, 27, 717
DpnII GATC 3 cut(s) 21, 25, 715
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 3 cut(s) 539, 545, 551
EarI CTCTTC 3 cut(s) 539, 545, 551
Eco130I CCWWGG 2 cut(s) 699, 780
Eco31I GGTCTC 1 cut(s) 384
Eco47I GGWCC 1 cut(s) 774
Eco57I CTGAAG 1 cut(s) 677
EcoRII CCWGG 1 cut(s) 151
EcoT14I CCWWGG 2 cut(s) 699, 780
EcoT22I ATGCAT 2 cut(s) 241, 331
ErhI CCWWGG 2 cut(s) 699, 780
FaeI CATG 3 cut(s) 32, 232, 703
FalI AAGNNNNNCTT 2 cut(s) 640, 672
FatI CATG 3 cut(s) 28, 228, 699
FauNDI CATATG 1 cut(s) 223
Fnu4HI GCNGC 1 cut(s) 423
FokI GGATG 4 cut(s) 38, 50, 306, 797
Fsp4HI GCNGC 1 cut(s) 423
FspBI CTAG 2 cut(s) 522, 675
GluI GCNGC 1 cut(s) 423
HaeIII GGCC 2 cut(s) 5, 698
HgaI GACGC 1 cut(s) 185
Hin1II CATG 3 cut(s) 32, 232, 703
HinfI GANTC 2 cut(s) 416, 788
HphI GGTGA 4 cut(s) 322, 483, 587, 656
Hpy188I TCNGA 3 cut(s) 201, 475, 688
Hpy188III TCNNGA 2 cut(s) 29, 243
HpyAV CCTTC 4 cut(s) 28, 516, 599, 693
HpyCH4III ACNGT 3 cut(s) 124, 369, 379
HpyCH4IV ACGT 1 cut(s) 13
HpyCH4V TGCA 6 cut(s) 221, 239, 329, 336, 431, 581
HpyF10VI GCNNNNNNNGC 2 cut(s) 419, 428
HpyF3I CTNAG 2 cut(s) 687, 725
HpySE526I ACGT 1 cut(s) 13
Hsp92II CATG 3 cut(s) 32, 232, 703
Kzo9I GATC 3 cut(s) 21, 25, 715
Lsp1109I GCAGC 1 cut(s) 434
LweI GCATC 5 cut(s) 248, 338, 418, 468, 568
MaeI CTAG 2 cut(s) 522, 675
MaeII ACGT 1 cut(s) 13
MaeIII GTNAC 2 cut(s) 118, 622
MalI GATC 3 cut(s) 23, 27, 717
MboI GATC 3 cut(s) 21, 25, 715
MboII GAAGA 6 cut(s) 325, 556, 562, 568, 646, 698
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 5 cut(s) 16, 147, 188, 638, 729
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 782
MmeI TCCRAC 1 cut(s) 590
MnlI CCTC 9 cut(s) 19, 65, 132, 139, 451, 492, 540, 546, 552
Mox20I TGGCCA 1 cut(s) 5
Mph1103I ATGCAT 2 cut(s) 241, 331
MroXI GAANNNNTTC 1 cut(s) 147
MscI TGGCCA 1 cut(s) 5
MseI TTAA 3 cut(s) 102, 159, 810
MslI CAYNNNNRTG 2 cut(s) 324, 812
Msp20I TGGCCA 1 cut(s) 5
MspR9I CCNGG 1 cut(s) 153
Mva1269I GAATGC 1 cut(s) 241
MvaI CCWGG 1 cut(s) 153
MwoI GCNNNNNNNGC 2 cut(s) 419, 428
NcoI CCATGG 1 cut(s) 699
NdeI CATATG 1 cut(s) 223
NdeII GATC 3 cut(s) 21, 25, 715
NlaIII CATG 3 cut(s) 32, 232, 703
NsiI ATGCAT 2 cut(s) 241, 331
PagI TCATGA 1 cut(s) 28
PctI GAATGC 1 cut(s) 241
PdmI GAANNNNTTC 1 cut(s) 147
PfeI GAWTC 1 cut(s) 416
PkrI GCNGC 1 cut(s) 424
PleI GAGTC 1 cut(s) 782
PpsI GAGTC 1 cut(s) 782
Ppu21I YACGTR 1 cut(s) 14
PshBI ATTAAT 1 cut(s) 159
Psp6I CCWGG 1 cut(s) 151
PspGI CCWGG 1 cut(s) 151
PspPI GGNCC 1 cut(s) 774
RsaI GTAC 3 cut(s) 42, 376, 591
RsaNI GTAC 3 cut(s) 41, 375, 590
RseI CAYNNNNRTG 2 cut(s) 324, 812
SaqAI TTAA 3 cut(s) 102, 159, 810
SatI GCNGC 1 cut(s) 423
Sau3AI GATC 3 cut(s) 21, 25, 715
Sau96I GGNCC 1 cut(s) 774
SchI GAGTC 1 cut(s) 782
ScrFI CCNGG 1 cut(s) 153
SfaNI GCATC 5 cut(s) 248, 338, 418, 468, 568
SfcI CTRYAG 1 cut(s) 299
SinI GGWCC 1 cut(s) 774
SmiMI CAYNNNNRTG 2 cut(s) 324, 812
SmlI CTYRAG 1 cut(s) 56
SmoI CTYRAG 1 cut(s) 56
Sse9I AATT 5 cut(s) 16, 147, 188, 638, 729
SspI AATATT 1 cut(s) 586
SspMI CTAG 2 cut(s) 522, 675
StyD4I CCNGG 1 cut(s) 151
StyI CCWWGG 2 cut(s) 699, 780
TaaI ACNGT 3 cut(s) 124, 369, 379
TaiI ACGT 1 cut(s) 16
TaqI TCGA 1 cut(s) 24
TaqII GACCGA 1 cut(s) 408
TasI AATT 5 cut(s) 16, 147, 188, 638, 729
TatI WGTACW 1 cut(s) 40
TfiI GAWTC 1 cut(s) 416
Tru1I TTAA 3 cut(s) 102, 159, 810
Tru9I TTAA 3 cut(s) 102, 159, 810
TseI GCWGC 1 cut(s) 422
TspDTI ATGAA 4 cut(s) 248, 647, 752, 796
VpaK11BI GGWCC 1 cut(s) 774
VspI ATTAAT 1 cut(s) 159
XapI RAATTY 2 cut(s) 147, 729
XcmI CCANNNNNNNNNTGG 1 cut(s) 406
XmnI GAANNNNTTC 1 cut(s) 147
XspI CTAG 2 cut(s) 522, 675
Zsp2I ATGCAT 2 cut(s) 241, 331
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.