Rroxscaffold_3G00218610

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000261
Physical Location & Seq
Forward (+)
930578 .. 931342
765 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00218610.1

Sequence Viewer

Length: 234 bp
ATGTCAATAGGCAAAAACAACGATCTGAGAGTAGTCGCAAAAAGAGGAAAAGAAGGAATGAAGATACGATGGTTCTTGCATTGGAAAACTATATGCAGAATTCGAAAAAGAAAAAAGAAAATGCAATCGGTAACTGATCAATCGGTAACTGATGTCATAGTGAAAGGTAATGATAATGGCTCTCGTATTGCTAAAGAACCTAAGAAAATGAAACTTTCTGTTCTGGACCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

77

Amino Acids

8.96

Weight (kDa)

10.7

Isoelectric Point (pI)

44.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000261)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18411 FvH4_1g22560 FvH4_1g24290 FvH4_1g24290 FvH4_1g24290 FvH4_1g29434 FvH4_2g04031 FvH4_2g04811 FvH4_2g07610 FvH4_2g09412 FvH4_3g15552 FvH4_3g30720 FvH4_4g05810 FvH4_4g09541 FvH4_4g15171 FvH4_6g09145 FvH4_6g49541 FvH4_7g00320 FvH4_7g11552
malus_domestica MD00G1072400.v1.1 MD01G1188100.v1.1 MD07G1132000.v1.1 MD08G1190700.v1.1 MD10G1011200.v1.1 MD14G1164100.v1.1 MD15G1289200.v1.1 MD15G1289300.v1.1 MD17G1245100.v1.1
prunus_persica Prupe.6G228600_v2.0.a1
pyrus_communis pycom01g07070 pycom02g06890 pycom02g06900 pycom02g13930 pycom04g07470 pycom04g11770 pycom04g21930 pycom05g08520 pycom06g04490 pycom06g09560 pycom07g03750 pycom08g08760 pycom08g13660 pycom09g11520 pycom09g14250 pycom09g14770 pycom10g00720 pycom10g01290 pycom10g10480 pycom10g15700 pycom12420g00130 pycom12g05380 pycom12g08750 pycom13g19010 pycom13g29080 pycom14g06210 pycom14g13680 pycom14g19850 pycom15g22070 pycom15g23440 pycom15g24950 pycom15g25280 pycom16g11100 pycom16g17080 pycom16g26310 pycom17g15650 pycom17g15670 pycom17g20370
rosa_chinensis RchiOBHm_Chr1g0373591 RchiOBHm_Chr2g0105551 RchiOBHm_Chr2g0106711 RchiOBHm_Chr2g0106721 RchiOBHm_Chr7g0219611
rosa_laevigata RLG00000013773 RLG00000017436 RLG00000017533
rosa_multiflora Rmu_co8001842.1_g000001 Rmu_co8158450.1_g000001 Rmu_sc0000516.1_g000067 Rmu_sc0000566.1_g000009 Rmu_sc0000965.1_g000025 Rmu_sc0001718.1_g000001 Rmu_sc0001719.1_g000020 Rmu_sc0001822.1_g000025 Rmu_sc0002219.1_g000003 Rmu_sc0002460.1_g000059 Rmu_sc0002757.1_g000001 Rmu_sc0002860.1_g000001 Rmu_sc0004531.1_g000001 Rmu_sc0005558.1_g000003 Rmu_sc0011218.1_g000001 Rmu_sc0011998.1_g000003 Rmu_sc0015560.1_g000002 Rmu_sc0015560.1_g000003
rosa_roxburghii Rroxscaffold_1G00004200 Rroxscaffold_1G00026570 Rroxscaffold_1G00040370 Rroxscaffold_1G00044120 Rroxscaffold_1G00049590 Rroxscaffold_1G00059030 Rroxscaffold_2G00108440 Rroxscaffold_2G00108850 Rroxscaffold_2G00130680 Rroxscaffold_2G00132980 Rroxscaffold_2G00136860 Rroxscaffold_3G00218610 Rroxscaffold_4G00309940 Rroxscaffold_6G00405560
rosa_rugosa Rorug02G0138000 Rorug02G0138100 Rorug02G0138100 Rorug06G0154000
rosa_samantha Rh1AG121500 Rh1CG116300 Rh2AG189000 Rh2AG509600 Rh2BG200200 Rh2CG194100 Rh2DG195300 Rh5AG114400 Rh5DG488800
rosa_wichuraiana Rw0G022020 Rw1G023650 Rw1G026380 Rw1G034750 Rw1G040770 Rw2G014870 Rw2G016560 Rw4G031190 Rw5G026570 Rw6G003020 Rw6G012060 Rw7G014300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 99
ApoI RAATTY 1 cut(s) 99
AspS9I GGNCC 1 cut(s) 226
AsuII TTCGAA 1 cut(s) 103
AvaII GGWCC 1 cut(s) 226
BaeI ACNNNNGTAYC 2 cut(s) 56, 89
BccI CCATC 1 cut(s) 63
BclI TGATCA 1 cut(s) 136
Bme18I GGWCC 1 cut(s) 226
BmgT120I GGNCC 1 cut(s) 226
Bpu14I TTCGAA 1 cut(s) 103
BseMII CTCAG 1 cut(s) 17
Bsp119I TTCGAA 1 cut(s) 103
Bsp143I GATC 2 cut(s) 22, 136
BspCNI CTCAG 1 cut(s) 18
BspT104I TTCGAA 1 cut(s) 103
BssMI GATC 2 cut(s) 22, 136
BstBI TTCGAA 1 cut(s) 103
BstDEI CTNAG 2 cut(s) 26, 201
BstKTI GATC 2 cut(s) 25, 139
BstMBI GATC 2 cut(s) 22, 136
BtsIMutI CAGTG 1 cut(s) 229
Cfr13I GGNCC 1 cut(s) 226
CviJI RGCY 1 cut(s) 180
CviKI_1 RGCY 1 cut(s) 180
DdeI CTNAG 2 cut(s) 26, 201
DpnI GATC 2 cut(s) 24, 138
DpnII GATC 2 cut(s) 22, 136
Eco47I GGWCC 1 cut(s) 226
EcoRI GAATTC 1 cut(s) 99
FaiI YATR 3 cut(s) 92, 94, 158
FbaI TGATCA 1 cut(s) 136
Hpy188I TCNGA 1 cut(s) 27
Hpy188III TCNNGA 1 cut(s) 224
HpyAV CCTTC 1 cut(s) 47
HpyCH4V TGCA 3 cut(s) 79, 96, 124
HpyF3I CTNAG 2 cut(s) 26, 201
Ksp22I TGATCA 1 cut(s) 136
Kzo9I GATC 2 cut(s) 22, 136
LpnPI CCDG 1 cut(s) 209
MaeIII GTNAC 2 cut(s) 130, 145
MalI GATC 2 cut(s) 24, 138
MboI GATC 2 cut(s) 22, 136
MboII GAAGA 1 cut(s) 73
MluCI AATT 1 cut(s) 99
MnlI CCTC 1 cut(s) 38
NdeII GATC 2 cut(s) 22, 136
NspV TTCGAA 1 cut(s) 103
PspPI GGNCC 1 cut(s) 226
Sau3AI GATC 2 cut(s) 22, 136
Sau96I GGNCC 1 cut(s) 226
SetI ASST 2 cut(s) 169, 202
SfuI TTCGAA 1 cut(s) 103
SgeI CNNG 2 cut(s) 88, 195
SinI GGWCC 1 cut(s) 226
Sse9I AATT 1 cut(s) 99
TaqI TCGA 1 cut(s) 103
TasI AATT 1 cut(s) 99
TspDTI ATGAA 2 cut(s) 74, 224
VpaK11BI GGWCC 1 cut(s) 226
XapI RAATTY 1 cut(s) 99
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.