pycom08g13660
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0000261
Physical Location & Seq
Reverse (-)
12486992 .. 12487288
297 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g13660.1

Sequence Viewer

Length: 297 bp
ATGGTTGAATCAGCAGCAGATACAATCGAAAACATGGGATTGGAAAATGAGGATGACGATGAGACCTTCGAGATGCCTCCGACTTCACCTACCACATCTCTTTCTATTGGTACATTCAGTGCATCTCAACCCAATAGGAAGAGGAATAAGAATGATGTTGATGCAAATATTGTAGCTGTTATCCGTGAAGGTTGGGATAAAGTAGTTACTGAAATGAAGAATTTAGGTGAAAGTTTTACTTTGAGAGAAGCGAAAGCCAGGTTACCTTCTCAGCTTCAGGCCATGGGTCTCCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

99

Amino Acids

10.8

Weight (kDa)

4.46

Isoelectric Point (pI)

54.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000261)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18411 FvH4_1g22560 FvH4_1g24290 FvH4_1g24290 FvH4_1g24290 FvH4_1g29434 FvH4_2g04031 FvH4_2g04811 FvH4_2g07610 FvH4_2g09412 FvH4_3g15552 FvH4_3g30720 FvH4_4g05810 FvH4_4g09541 FvH4_4g15171 FvH4_6g09145 FvH4_6g49541 FvH4_7g00320 FvH4_7g11552
malus_domestica MD00G1072400.v1.1 MD01G1188100.v1.1 MD07G1132000.v1.1 MD08G1190700.v1.1 MD10G1011200.v1.1 MD14G1164100.v1.1 MD15G1289200.v1.1 MD15G1289300.v1.1 MD17G1245100.v1.1
prunus_persica Prupe.6G228600_v2.0.a1
pyrus_communis pycom01g07070 pycom02g06890 pycom02g06900 pycom02g13930 pycom04g07470 pycom04g11770 pycom04g21930 pycom05g08520 pycom06g04490 pycom06g09560 pycom07g03750 pycom08g08760 pycom08g13660 pycom09g11520 pycom09g14250 pycom09g14770 pycom10g00720 pycom10g01290 pycom10g10480 pycom10g15700 pycom12420g00130 pycom12g05380 pycom12g08750 pycom13g19010 pycom13g29080 pycom14g06210 pycom14g13680 pycom14g19850 pycom15g22070 pycom15g23440 pycom15g24950 pycom15g25280 pycom16g11100 pycom16g17080 pycom16g26310 pycom17g15650 pycom17g15670 pycom17g20370
rosa_chinensis RchiOBHm_Chr1g0373591 RchiOBHm_Chr2g0105551 RchiOBHm_Chr2g0106711 RchiOBHm_Chr2g0106721 RchiOBHm_Chr7g0219611
rosa_laevigata RLG00000013773 RLG00000017436 RLG00000017533
rosa_multiflora Rmu_co8001842.1_g000001 Rmu_co8158450.1_g000001 Rmu_sc0000516.1_g000067 Rmu_sc0000566.1_g000009 Rmu_sc0000965.1_g000025 Rmu_sc0001718.1_g000001 Rmu_sc0001719.1_g000020 Rmu_sc0001822.1_g000025 Rmu_sc0002219.1_g000003 Rmu_sc0002460.1_g000059 Rmu_sc0002757.1_g000001 Rmu_sc0002860.1_g000001 Rmu_sc0004531.1_g000001 Rmu_sc0005558.1_g000003 Rmu_sc0011218.1_g000001 Rmu_sc0011998.1_g000003 Rmu_sc0015560.1_g000002 Rmu_sc0015560.1_g000003
rosa_roxburghii Rroxscaffold_1G00004200 Rroxscaffold_1G00026570 Rroxscaffold_1G00040370 Rroxscaffold_1G00044120 Rroxscaffold_1G00049590 Rroxscaffold_1G00059030 Rroxscaffold_2G00108440 Rroxscaffold_2G00108850 Rroxscaffold_2G00130680 Rroxscaffold_2G00132980 Rroxscaffold_2G00136860 Rroxscaffold_3G00218610 Rroxscaffold_4G00309940 Rroxscaffold_6G00405560
rosa_rugosa Rorug02G0138000 Rorug02G0138100 Rorug02G0138100 Rorug06G0154000
rosa_samantha Rh1AG121500 Rh1CG116300 Rh2AG189000 Rh2AG509600 Rh2BG200200 Rh2CG194100 Rh2DG195300 Rh5AG114400 Rh5DG488800
rosa_wichuraiana Rw0G022020 Rw1G023650 Rw1G026380 Rw1G034750 Rw1G040770 Rw2G014870 Rw2G016560 Rw4G031190 Rw5G026570 Rw6G003020 Rw6G012060 Rw7G014300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 220
AcuI CTGAAG 1 cut(s) 260
AfaI GTAC 1 cut(s) 112
AgsI TTSAA 1 cut(s) 8
AjnI CCWGG 1 cut(s) 257
AluBI AGCT 2 cut(s) 176, 274
AluI AGCT 2 cut(s) 176, 274
Alw26I GTCTC 2 cut(s) 56, 293
AoxI GGCC 1 cut(s) 279
ApeKI GCWGC 1 cut(s) 14
ApoI RAATTY 1 cut(s) 220
AsuHPI GGTGA 2 cut(s) 78, 239
BbvI GCAGC 1 cut(s) 26
BciT130I CCWGG 1 cut(s) 259
BcoDI GTCTC 2 cut(s) 56, 293
BisI GCNGC 1 cut(s) 15
BlsI GCNGC 1 cut(s) 16
Bme1390I CCNGG 1 cut(s) 259
BmrFI CCNGG 1 cut(s) 259
BmsI GCATC 3 cut(s) 63, 131, 151
BsaI GGTCTC 2 cut(s) 56, 293
BsaJI CCNNGG 1 cut(s) 282
BseBI CCWGG 1 cut(s) 259
BseDI CCNNGG 1 cut(s) 282
BseGI GGATG 1 cut(s) 58
BseMII CTCAG 1 cut(s) 284
BseXI GCAGC 1 cut(s) 26
BshFI GGCC 1 cut(s) 281
BsmAI GTCTC 2 cut(s) 56, 293
BsnI GGCC 1 cut(s) 281
Bso31I GGTCTC 2 cut(s) 56, 293
Bsp19I CCATGG 1 cut(s) 282
BspANI GGCC 1 cut(s) 281
BspCNI CTCAG 1 cut(s) 283
BspTNI GGTCTC 2 cut(s) 56, 293
BssECI CCNNGG 1 cut(s) 282
BssT1I CCWWGG 1 cut(s) 282
Bst2UI CCWGG 1 cut(s) 259
Bst6I CTCTTC 1 cut(s) 134
BstDEI CTNAG 1 cut(s) 270
BstDSI CCRYGG 1 cut(s) 282
BstEII GGTNACC 1 cut(s) 261
BstF5I GGATG 1 cut(s) 58
BstMAI GTCTC 2 cut(s) 56, 293
BstNI CCWGG 1 cut(s) 259
BstPI GGTNACC 1 cut(s) 261
BstSCI CCNGG 1 cut(s) 257
BstV1I GCAGC 1 cut(s) 26
BsuRI GGCC 1 cut(s) 281
BtgI CCRYGG 1 cut(s) 282
BtsCI GGATG 1 cut(s) 58
BtsIMutI CAGTG 1 cut(s) 124
Csp6I GTAC 1 cut(s) 111
CviAII CATG 2 cut(s) 34, 283
CviJI RGCY 4 cut(s) 176, 257, 274, 281
CviKI_1 RGCY 4 cut(s) 176, 257, 274, 281
CviQI GTAC 1 cut(s) 111
DdeI CTNAG 1 cut(s) 270
Eam1104I CTCTTC 1 cut(s) 134
EarI CTCTTC 1 cut(s) 134
Eco130I CCWWGG 1 cut(s) 282
Eco31I GGTCTC 2 cut(s) 56, 293
Eco57I CTGAAG 1 cut(s) 260
Eco91I GGTNACC 1 cut(s) 261
EcoO65I GGTNACC 1 cut(s) 261
EcoRII CCWGG 1 cut(s) 257
EcoT14I CCWWGG 1 cut(s) 282
ErhI CCWWGG 1 cut(s) 282
FaeI CATG 2 cut(s) 37, 286
FaiI YATR 3 cut(s) 35, 284, 295
FalI AAGNNNNNCTT 2 cut(s) 223, 255
FatI CATG 2 cut(s) 33, 282
Fnu4HI GCNGC 1 cut(s) 15
FokI GGATG 1 cut(s) 65
Fsp4HI GCNGC 1 cut(s) 15
GluI GCNGC 1 cut(s) 15
HaeIII GGCC 1 cut(s) 281
Hin1II CATG 2 cut(s) 37, 286
HinfI GANTC 1 cut(s) 8
HphI GGTGA 2 cut(s) 78, 239
Hpy188I TCNGA 1 cut(s) 81
Hpy188III TCNNGA 1 cut(s) 70
HpyAV CCTTC 3 cut(s) 76, 182, 276
HpyCH4V TGCA 2 cut(s) 122, 164
HpyF3I CTNAG 1 cut(s) 270
Hsp92II CATG 2 cut(s) 37, 286
LpnPI CCDG 3 cut(s) 244, 263, 271
Lsp1109I GCAGC 1 cut(s) 26
LweI GCATC 3 cut(s) 63, 131, 151
MaeIII GTNAC 2 cut(s) 205, 261
MboII GAAGA 2 cut(s) 151, 229
MluCI AATT 1 cut(s) 220
MmeI TCCRAC 1 cut(s) 104
MnlI CCTC 3 cut(s) 43, 87, 135
MspR9I CCNGG 1 cut(s) 259
MvaI CCWGG 1 cut(s) 259
NcoI CCATGG 1 cut(s) 282
NlaIII CATG 2 cut(s) 37, 286
PfeI GAWTC 1 cut(s) 8
PkrI GCNGC 1 cut(s) 16
Psp6I CCWGG 1 cut(s) 257
PspEI GGTNACC 1 cut(s) 261
PspGI CCWGG 1 cut(s) 257
RsaI GTAC 1 cut(s) 112
RsaNI GTAC 1 cut(s) 111
SatI GCNGC 1 cut(s) 15
ScrFI CCNGG 1 cut(s) 259
SetI ASST 8 cut(s) 68, 91, 178, 193, 229, 263, 268, 276
SfaNI GCATC 3 cut(s) 63, 131, 151
SgeI CNNG 6 cut(s) 46, 82, 197, 270, 271, 290
Sse9I AATT 1 cut(s) 220
SspI AATATT 1 cut(s) 169
StyD4I CCNGG 1 cut(s) 257
StyI CCWWGG 1 cut(s) 282
TaqI TCGA 2 cut(s) 27, 69
TasI AATT 1 cut(s) 220
TfiI GAWTC 1 cut(s) 8
TscAI CASTG 1 cut(s) 124
TseI GCWGC 1 cut(s) 14
TspDTI ATGAA 1 cut(s) 230
TspGWI ACGGA 1 cut(s) 173
TspRI CASTG 1 cut(s) 124
XapI RAATTY 1 cut(s) 220
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.