DNA ligase
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 590 |
| AcoI | YGGCCR | 1 cut(s) | 587 |
| AcuI | CTGAAG | 2 cut(s) | 215, 254 |
| AfaI | GTAC | 1 cut(s) | 142 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 417 |
| AgsI | TTSAA | 4 cut(s) | 62, 79, 226, 494 |
| AluBI | AGCT | 2 cut(s) | 57, 407 |
| AluI | AGCT | 2 cut(s) | 57, 407 |
| Alw21I | GWGCWC | 1 cut(s) | 530 |
| AoxI | GGCC | 2 cut(s) | 556, 587 |
| ApeKI | GCWGC | 2 cut(s) | 114, 346 |
| AspS9I | GGNCC | 2 cut(s) | 51, 445 |
| AsuC2I | CCSGG | 2 cut(s) | 560, 575 |
| AsuHPI | GGTGA | 1 cut(s) | 23 |
| AvaII | GGWCC | 2 cut(s) | 51, 445 |
| BbsI | GAAGAC | 1 cut(s) | 489 |
| Bbv12I | GWGCWC | 1 cut(s) | 530 |
| BbvI | GCAGC | 2 cut(s) | 101, 358 |
| BccI | CCATC | 3 cut(s) | 363, 419, 454 |
| BceAI | ACGGC | 1 cut(s) | 502 |
| BciVI | GTATCC | 2 cut(s) | 328, 396 |
| BcnI | CCSGG | 2 cut(s) | 560, 575 |
| BfaI | CTAG | 1 cut(s) | 404 |
| BfuI | GTATCC | 2 cut(s) | 328, 396 |
| BisI | GCNGC | 3 cut(s) | 115, 347, 590 |
| BlsI | GCNGC | 3 cut(s) | 116, 348, 591 |
| Bme1390I | CCNGG | 2 cut(s) | 560, 575 |
| Bme18I | GGWCC | 2 cut(s) | 51, 445 |
| BmgT120I | GGNCC | 2 cut(s) | 51, 445 |
| BmiI | GGNNCC | 1 cut(s) | 447 |
| BmrFI | CCNGG | 2 cut(s) | 560, 575 |
| BpiI | GAAGAC | 1 cut(s) | 489 |
| BpmI | CTGGAG | 1 cut(s) | 123 |
| BpuMI | CCSGG | 2 cut(s) | 560, 575 |
| BsaJI | CCNNGG | 1 cut(s) | 603 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 429, 459 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 417 |
| Bse1I | ACTGG | 2 cut(s) | 127, 433 |
| BseDI | CCNNGG | 1 cut(s) | 603 |
| BseGI | GGATG | 1 cut(s) | 374 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 417 |
| BseMII | CTCAG | 1 cut(s) | 554 |
| BseNI | ACTGG | 2 cut(s) | 127, 433 |
| BseRI | GAGGAG | 1 cut(s) | 479 |
| BseXI | GCAGC | 2 cut(s) | 101, 358 |
| BshFI | GGCC | 2 cut(s) | 558, 589 |
| BsiHKAI | GWGCWC | 1 cut(s) | 530 |
| BsiSI | CCGG | 2 cut(s) | 559, 575 |
| BslFI | GGGAC | 2 cut(s) | 165, 431 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 417 |
| BsmFI | GGGAC | 2 cut(s) | 165, 431 |
| BsmI | GAATGC | 1 cut(s) | 166 |
| BsnI | GGCC | 2 cut(s) | 558, 589 |
| Bsp1286I | GDGCHC | 1 cut(s) | 530 |
| Bsp19I | CCATGG | 1 cut(s) | 603 |
| BspACI | CCGC | 1 cut(s) | 590 |
| BspANI | GGCC | 2 cut(s) | 558, 589 |
| BspCNI | CTCAG | 1 cut(s) | 553 |
| BspLI | GGNNCC | 1 cut(s) | 447 |
| BsrI | ACTGG | 2 cut(s) | 127, 433 |
| BssECI | CCNNGG | 1 cut(s) | 603 |
| BssT1I | CCWWGG | 1 cut(s) | 603 |
| BstDEI | CTNAG | 1 cut(s) | 540 |
| BstDSI | CCRYGG | 1 cut(s) | 603 |
| BstF5I | GGATG | 1 cut(s) | 374 |
| BstSCI | CCNGG | 2 cut(s) | 558, 573 |
| BstV1I | GCAGC | 2 cut(s) | 101, 358 |
| BstV2I | GAAGAC | 1 cut(s) | 489 |
| BsuI | GTATCC | 2 cut(s) | 328, 396 |
| BsuRI | GGCC | 2 cut(s) | 558, 589 |
| BtgI | CCRYGG | 1 cut(s) | 603 |
| BtsCI | GGATG | 1 cut(s) | 374 |
| BtsIMutI | CAGTG | 1 cut(s) | 120 |
| Cfr13I | GGNCC | 2 cut(s) | 51, 445 |
| Csp6I | GTAC | 1 cut(s) | 141 |
| CviAII | CATG | 4 cut(s) | 262, 285, 517, 604 |
| CviJI | RGCY | 5 cut(s) | 57, 407, 513, 558, 589 |
| CviKI_1 | RGCY | 5 cut(s) | 57, 407, 513, 558, 589 |
| CviQI | GTAC | 1 cut(s) | 141 |
| DdeI | CTNAG | 1 cut(s) | 540 |
| DraI | TTTAAA | 2 cut(s) | 133, 168 |
| EaeI | YGGCCR | 1 cut(s) | 587 |
| Eco130I | CCWWGG | 1 cut(s) | 603 |
| Eco32I | GATATC | 1 cut(s) | 295 |
| Eco47I | GGWCC | 2 cut(s) | 51, 445 |
| Eco57I | CTGAAG | 2 cut(s) | 215, 254 |
| EcoO109I | RGGNCCY | 1 cut(s) | 445 |
| EcoRV | GATATC | 1 cut(s) | 295 |
| EcoT14I | CCWWGG | 1 cut(s) | 603 |
| ErhI | CCWWGG | 1 cut(s) | 603 |
| FaeI | CATG | 4 cut(s) | 265, 288, 520, 607 |
| FaqI | GGGAC | 2 cut(s) | 165, 431 |
| FatI | CATG | 4 cut(s) | 261, 284, 516, 603 |
| Fnu4HI | GCNGC | 3 cut(s) | 115, 347, 590 |
| FokI | GGATG | 1 cut(s) | 381 |
| Fsp4HI | GCNGC | 3 cut(s) | 115, 347, 590 |
| FspBI | CTAG | 1 cut(s) | 404 |
| GluI | GCNGC | 3 cut(s) | 115, 347, 590 |
| GsuI | CTGGAG | 1 cut(s) | 123 |
| HaeIII | GGCC | 2 cut(s) | 558, 589 |
| HapII | CCGG | 2 cut(s) | 559, 575 |
| Hin1II | CATG | 4 cut(s) | 265, 288, 520, 607 |
| HinfI | GANTC | 2 cut(s) | 68, 215 |
| HpaII | CCGG | 2 cut(s) | 559, 575 |
| HphI | GGTGA | 1 cut(s) | 23 |
| Hpy166II | GTNNAC | 1 cut(s) | 206 |
| Hpy188I | TCNGA | 2 cut(s) | 195, 597 |
| Hpy188III | TCNNGA | 2 cut(s) | 86, 157 |
| Hpy8I | GTNNAC | 1 cut(s) | 206 |
| Hpy99I | CGWCG | 1 cut(s) | 583 |
| HpyAV | CCTTC | 2 cut(s) | 190, 557 |
| HpyCH4IV | ACGT | 1 cut(s) | 581 |
| HpyCH4V | TGCA | 3 cut(s) | 284, 306, 346 |
| HpyF3I | CTNAG | 1 cut(s) | 540 |
| HpySE526I | ACGT | 1 cut(s) | 581 |
| Hsp92II | CATG | 4 cut(s) | 265, 288, 520, 607 |
| LmnI | GCTCC | 1 cut(s) | 466 |
| Lsp1109I | GCAGC | 2 cut(s) | 101, 358 |
| MaeI | CTAG | 1 cut(s) | 404 |
| MaeII | ACGT | 1 cut(s) | 581 |
| MaeIII | GTNAC | 1 cut(s) | 544 |
| MboII | GAAGA | 5 cut(s) | 74, 77, 238, 247, 494 |
| MhlI | GDGCHC | 1 cut(s) | 530 |
| MluCI | AATT | 3 cut(s) | 93, 184, 432 |
| MlyI | GAGTC | 1 cut(s) | 209 |
| MnlI | CCTC | 5 cut(s) | 98, 319, 436, 457, 603 |
| MseI | TTAA | 4 cut(s) | 38, 132, 167, 309 |
| MslI | CAYNNNNRTG | 1 cut(s) | 521 |
| MspI | CCGG | 2 cut(s) | 559, 575 |
| MspR9I | CCNGG | 2 cut(s) | 560, 575 |
| Mva1269I | GAATGC | 1 cut(s) | 166 |
| NciI | CCSGG | 2 cut(s) | 560, 575 |
| NcoI | CCATGG | 1 cut(s) | 603 |
| NlaIII | CATG | 4 cut(s) | 265, 288, 520, 607 |
| NlaIV | GGNNCC | 1 cut(s) | 447 |
| PctI | GAATGC | 1 cut(s) | 166 |
| PfeI | GAWTC | 1 cut(s) | 68 |
| PkrI | GCNGC | 3 cut(s) | 116, 348, 591 |
| PleI | GAGTC | 1 cut(s) | 209 |
| PpsI | GAGTC | 1 cut(s) | 209 |
| PpuMI | RGGWCCY | 1 cut(s) | 445 |
| Psp5II | RGGWCCY | 1 cut(s) | 445 |
| PspN4I | GGNNCC | 1 cut(s) | 447 |
| PspPI | GGNCC | 2 cut(s) | 51, 445 |
| PspPPI | RGGWCCY | 1 cut(s) | 445 |
| RsaI | GTAC | 1 cut(s) | 142 |
| RsaNI | GTAC | 1 cut(s) | 141 |
| RseI | CAYNNNNRTG | 1 cut(s) | 521 |
| SaqAI | TTAA | 4 cut(s) | 38, 132, 167, 309 |
| SatI | GCNGC | 3 cut(s) | 115, 347, 590 |
| Sau96I | GGNCC | 2 cut(s) | 51, 445 |
| SchI | GAGTC | 1 cut(s) | 209 |
| ScrFI | CCNGG | 2 cut(s) | 560, 575 |
| SduI | GDGCHC | 1 cut(s) | 530 |
| SetI | ASST | 7 cut(s) | 59, 330, 409, 447, 546, 568, 584 |
| SinI | GGWCC | 2 cut(s) | 51, 445 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 521 |
| Sse9I | AATT | 3 cut(s) | 93, 184, 432 |
| SsiI | CCGC | 1 cut(s) | 590 |
| SspMI | CTAG | 1 cut(s) | 404 |
| StyD4I | CCNGG | 2 cut(s) | 558, 573 |
| StyI | CCWWGG | 1 cut(s) | 603 |
| TaiI | ACGT | 1 cut(s) | 584 |
| TaqI | TCGA | 1 cut(s) | 156 |
| TasI | AATT | 3 cut(s) | 93, 184, 432 |
| TauI | GCSGC | 1 cut(s) | 592 |
| TfiI | GAWTC | 1 cut(s) | 68 |
| Tru1I | TTAA | 4 cut(s) | 38, 132, 167, 309 |
| Tru9I | TTAA | 4 cut(s) | 38, 132, 167, 309 |
| TscAI | CASTG | 1 cut(s) | 127 |
| TseI | GCWGC | 2 cut(s) | 114, 346 |
| TspDTI | ATGAA | 3 cut(s) | 30, 281, 495 |
| TspGWI | ACGGA | 1 cut(s) | 105 |
| TspRI | CASTG | 1 cut(s) | 127 |
| VpaK11BI | GGWCC | 2 cut(s) | 51, 445 |
| XspI | CTAG | 1 cut(s) | 404 |