FvH4_1g24290
MYB Family

nuclease HARBI1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000261
Physical Location & Seq
Reverse (-)
16148437 .. 16150113
1677 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g24290.t3

Sequence Viewer

Length: 645 bp
ATGGATGGAAGAAATCTGTTGTTGGAACTGTGGCATTTAGAGAATGTGTCTGCTTGTACAATCCTTGTGTTTCTGATGTTGAAATTGAGGCAAAGACGAGATCAACGAATGGCTTTAGATAATCGATCATTTGTTAGATGTGAGACTCGGTTGATTTATCTAGATAGTACAATAGGCAATAGCAATGATGCATGGGATATGTATGTTCAGGACTGTGCCAATGGAAGAGGAGCTGAAGCCCCTACTGATTTGGCGGATGTGCAAAGCAATAATGATATCAATCTTGAGAATCTGGTTAATGAGAATAACGTAAGTCCTGGGTCACTTAACCAAGAATGTAGCCAATCTGAAGGTAGTAGGAAGAGGAAGAGAGTTGATGAGACTGATAAGATTGTTGTAGCTTTGGAGAAATTATTTGAAGAATCCGGAAAGAGGATGCAAATGGTAACTGAGGCCATATTGAAGGGTAATGAAGATCGCTCTGACATTGCCAAAGAATTGAAGAACATGGGTTTATCTGTTGATGATCAAATTGCTACATTAAGAATCATCCTAGAGAGACCACAAAACATCTCTATCTTCAAGTCATTGGATGATGAGGTTAAAGCAGTATTTGTTCAGAACTTGCTTATGGGCAATAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4 Myb_DNA-bind_3

Protein Analysis

215

Amino Acids

24.35

Weight (kDa)

4.95

Isoelectric Point (pI)

46.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000261)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18411 FvH4_1g22560 FvH4_1g24290 FvH4_1g24290 FvH4_1g24290 FvH4_1g29434 FvH4_2g04031 FvH4_2g04811 FvH4_2g07610 FvH4_2g09412 FvH4_3g15552 FvH4_3g30720 FvH4_4g05810 FvH4_4g09541 FvH4_4g15171 FvH4_6g09145 FvH4_6g49541 FvH4_7g00320 FvH4_7g11552
malus_domestica MD00G1072400.v1.1 MD01G1188100.v1.1 MD07G1132000.v1.1 MD08G1190700.v1.1 MD10G1011200.v1.1 MD14G1164100.v1.1 MD15G1289200.v1.1 MD15G1289300.v1.1 MD17G1245100.v1.1
prunus_persica Prupe.6G228600_v2.0.a1
pyrus_communis pycom01g07070 pycom02g06890 pycom02g06900 pycom02g13930 pycom04g07470 pycom04g11770 pycom04g21930 pycom05g08520 pycom06g04490 pycom06g09560 pycom07g03750 pycom08g08760 pycom08g13660 pycom09g11520 pycom09g14250 pycom09g14770 pycom10g00720 pycom10g01290 pycom10g10480 pycom10g15700 pycom12420g00130 pycom12g05380 pycom12g08750 pycom13g19010 pycom13g29080 pycom14g06210 pycom14g13680 pycom14g19850 pycom15g22070 pycom15g23440 pycom15g24950 pycom15g25280 pycom16g11100 pycom16g17080 pycom16g26310 pycom17g15650 pycom17g15670 pycom17g20370
rosa_chinensis RchiOBHm_Chr1g0373591 RchiOBHm_Chr2g0105551 RchiOBHm_Chr2g0106711 RchiOBHm_Chr2g0106721 RchiOBHm_Chr7g0219611
rosa_laevigata RLG00000013773 RLG00000017436 RLG00000017533
rosa_multiflora Rmu_co8001842.1_g000001 Rmu_co8158450.1_g000001 Rmu_sc0000516.1_g000067 Rmu_sc0000566.1_g000009 Rmu_sc0000965.1_g000025 Rmu_sc0001718.1_g000001 Rmu_sc0001719.1_g000020 Rmu_sc0001822.1_g000025 Rmu_sc0002219.1_g000003 Rmu_sc0002460.1_g000059 Rmu_sc0002757.1_g000001 Rmu_sc0002860.1_g000001 Rmu_sc0004531.1_g000001 Rmu_sc0005558.1_g000003 Rmu_sc0011218.1_g000001 Rmu_sc0011998.1_g000003 Rmu_sc0015560.1_g000002 Rmu_sc0015560.1_g000003
rosa_roxburghii Rroxscaffold_1G00004200 Rroxscaffold_1G00026570 Rroxscaffold_1G00040370 Rroxscaffold_1G00044120 Rroxscaffold_1G00049590 Rroxscaffold_1G00059030 Rroxscaffold_2G00108440 Rroxscaffold_2G00108850 Rroxscaffold_2G00130680 Rroxscaffold_2G00132980 Rroxscaffold_2G00136860 Rroxscaffold_3G00218610 Rroxscaffold_4G00309940 Rroxscaffold_6G00405560
rosa_rugosa Rorug02G0138000 Rorug02G0138100 Rorug02G0138100 Rorug06G0154000
rosa_samantha Rh1AG121500 Rh1CG116300 Rh2AG189000 Rh2AG509600 Rh2BG200200 Rh2CG194100 Rh2DG195300 Rh5AG114400 Rh5DG488800
rosa_wichuraiana Rw0G022020 Rw1G023650 Rw1G026380 Rw1G034750 Rw1G040770 Rw2G014870 Rw2G016560 Rw4G031190 Rw5G026570 Rw6G003020 Rw6G012060 Rw7G014300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 425
AciI CCGC 1 cut(s) 254
AcuI CTGAAG 2 cut(s) 255, 369
AfaI GTAC 2 cut(s) 58, 169
AfiI CCNNNNNNNGG 1 cut(s) 432
AgsI TTSAA 5 cut(s) 82, 419, 463, 502, 583
AjnI CCWGG 1 cut(s) 316
AluBI AGCT 2 cut(s) 233, 401
AluI AGCT 2 cut(s) 233, 401
Alw26I GTCTC 3 cut(s) 137, 374, 553
Aor13HI TCCGGA 1 cut(s) 425
AoxI GGCC 1 cut(s) 453
BciT130I CCWGG 1 cut(s) 318
BclI TGATCA 1 cut(s) 526
BcoDI GTCTC 3 cut(s) 137, 374, 553
BfaI CTAG 2 cut(s) 161, 554
Bme1390I CCNGG 1 cut(s) 318
BmrFI CCNGG 1 cut(s) 318
BmsI GCATC 2 cut(s) 178, 426
BpuEI CTTGAG 1 cut(s) 305
Bsa29I ATCGAT 1 cut(s) 124
BsaBI GATNNNNATC 1 cut(s) 279
BsaI GGTCTC 1 cut(s) 553
BsaJI CCNNGG 1 cut(s) 317
BsaWI WCCGGW 1 cut(s) 425
Bsc4I CCNNNNNNNGG 1 cut(s) 432
Bse3DI GCAATG 2 cut(s) 190, 486
Bse8I GATNNNNATC 1 cut(s) 279
BseAI TCCGGA 1 cut(s) 425
BseBI CCWGG 1 cut(s) 318
BseCI ATCGAT 1 cut(s) 124
BseDI CCNNGG 1 cut(s) 317
BseGI GGATG 5 cut(s) 10, 262, 441, 549, 598
BseJI GATNNNNATC 1 cut(s) 279
BseLI CCNNNNNNNGG 1 cut(s) 432
BseMI GCAATG 2 cut(s) 190, 486
BseMII CTCAG 1 cut(s) 441
BseRI GAGGAG 1 cut(s) 243
BshFI GGCC 1 cut(s) 455
BshVI ATCGAT 1 cut(s) 124
BsiSI CCGG 1 cut(s) 426
BslI CCNNNNNNNGG 1 cut(s) 432
BsmAI GTCTC 3 cut(s) 137, 374, 553
BsnI GGCC 1 cut(s) 455
Bso31I GGTCTC 1 cut(s) 553
Bsp13I TCCGGA 1 cut(s) 425
Bsp1407I TGTACA 1 cut(s) 56
Bsp143I GATC 4 cut(s) 100, 125, 475, 526
BspACI CCGC 1 cut(s) 254
BspANI GGCC 1 cut(s) 455
BspCNI CTCAG 1 cut(s) 442
BspDI ATCGAT 1 cut(s) 124
BspEI TCCGGA 1 cut(s) 425
BspTNI GGTCTC 1 cut(s) 553
BsrDI GCAATG 2 cut(s) 190, 486
BsrGI TGTACA 1 cut(s) 56
BssECI CCNNGG 1 cut(s) 317
BssMI GATC 4 cut(s) 100, 125, 475, 526
Bst2UI CCWGG 1 cut(s) 318
Bst4CI ACNGT 2 cut(s) 30, 215
Bst6I CTCTTC 3 cut(s) 220, 356, 362
BstAUI TGTACA 1 cut(s) 56
BstDEI CTNAG 1 cut(s) 450
BstF5I GGATG 5 cut(s) 10, 262, 441, 549, 598
BstKTI GATC 4 cut(s) 103, 128, 478, 529
BstMAI GTCTC 3 cut(s) 137, 374, 553
BstMBI GATC 4 cut(s) 100, 125, 475, 526
BstNI CCWGG 1 cut(s) 318
BstSCI CCNGG 1 cut(s) 316
Bsu15I ATCGAT 1 cut(s) 124
BsuRI GGCC 1 cut(s) 455
BsuTUI ATCGAT 1 cut(s) 124
BtsCI GGATG 5 cut(s) 10, 262, 441, 549, 598
ClaI ATCGAT 1 cut(s) 124
Csp6I GTAC 2 cut(s) 57, 168
CviAII CATG 2 cut(s) 192, 508
CviJI RGCY 6 cut(s) 113, 233, 239, 342, 401, 455
CviKI_1 RGCY 6 cut(s) 113, 233, 239, 342, 401, 455
CviQI GTAC 2 cut(s) 57, 168
DdeI CTNAG 1 cut(s) 450
DpnI GATC 4 cut(s) 102, 127, 477, 528
DpnII GATC 4 cut(s) 100, 125, 475, 526
Eam1104I CTCTTC 3 cut(s) 220, 356, 362
EarI CTCTTC 3 cut(s) 220, 356, 362
EciI GGCGGA 1 cut(s) 269
Eco31I GGTCTC 1 cut(s) 553
Eco32I GATATC 1 cut(s) 277
Eco57I CTGAAG 2 cut(s) 255, 369
EcoRII CCWGG 1 cut(s) 316
EcoRV GATATC 1 cut(s) 277
EcoT22I ATGCAT 1 cut(s) 193
FaeI CATG 2 cut(s) 195, 511
FaiI YATR 6 cut(s) 193, 200, 204, 458, 509, 632
FatI CATG 2 cut(s) 191, 507
FbaI TGATCA 1 cut(s) 526
FokI GGATG 5 cut(s) 17, 269, 448, 536, 605
FspBI CTAG 2 cut(s) 161, 554
HaeIII GGCC 1 cut(s) 455
HapII CCGG 1 cut(s) 426
Hin1II CATG 2 cut(s) 195, 511
HinfI GANTC 4 cut(s) 145, 289, 422, 546
HpaII CCGG 1 cut(s) 426
Hpy188I TCNGA 4 cut(s) 75, 349, 484, 621
Hpy188III TCNNGA 4 cut(s) 161, 209, 284, 426
HpyAV CCTTC 2 cut(s) 344, 457
HpyCH4III ACNGT 2 cut(s) 30, 215
HpyCH4IV ACGT 1 cut(s) 309
HpyCH4V TGCA 3 cut(s) 191, 262, 439
HpyF3I CTNAG 1 cut(s) 450
HpySE526I ACGT 1 cut(s) 309
Hsp92II CATG 2 cut(s) 195, 511
Kpn2I TCCGGA 1 cut(s) 425
Ksp22I TGATCA 1 cut(s) 526
Kzo9I GATC 4 cut(s) 100, 125, 475, 526
LmnI GCTCC 1 cut(s) 230
LpnPI CCDG 5 cut(s) 194, 278, 303, 330, 439
LweI GCATC 2 cut(s) 178, 426
MaeI CTAG 2 cut(s) 161, 554
MaeII ACGT 1 cut(s) 309
MaeIII GTNAC 2 cut(s) 321, 445
MalI GATC 4 cut(s) 102, 127, 477, 528
MboI GATC 4 cut(s) 100, 125, 475, 526
MboII GAAGA 8 cut(s) 21, 237, 373, 379, 431, 485, 514, 571
MluCI AATT 4 cut(s) 83, 410, 497, 531
MlyI GAGTC 1 cut(s) 139
MnlI CCTC 6 cut(s) 81, 221, 357, 426, 445, 592
Mph1103I ATGCAT 1 cut(s) 193
MroI TCCGGA 1 cut(s) 425
MseI TTAA 4 cut(s) 297, 327, 542, 603
MspI CCGG 1 cut(s) 426
MspR9I CCNGG 1 cut(s) 318
MvaI CCWGG 1 cut(s) 318
NdeII GATC 4 cut(s) 100, 125, 475, 526
NlaIII CATG 2 cut(s) 195, 511
NmuCI GTSAC 1 cut(s) 321
NsiI ATGCAT 1 cut(s) 193
PcsI WCGNNNNNNNCGW 1 cut(s) 103
PfeI GAWTC 3 cut(s) 289, 422, 546
PleI GAGTC 1 cut(s) 139
PpsI GAGTC 1 cut(s) 139
Psp6I CCWGG 1 cut(s) 316
PspGI CCWGG 1 cut(s) 316
RsaI GTAC 2 cut(s) 58, 169
RsaNI GTAC 2 cut(s) 57, 168
SaqAI TTAA 4 cut(s) 297, 327, 542, 603
Sau3AI GATC 4 cut(s) 100, 125, 475, 526
SchI GAGTC 1 cut(s) 139
ScrFI CCNGG 1 cut(s) 318
SetI ASST 5 cut(s) 235, 312, 355, 403, 603
SfaNI GCATC 2 cut(s) 178, 426
SmlI CTYRAG 1 cut(s) 284
SmoI CTYRAG 1 cut(s) 284
Sse9I AATT 4 cut(s) 83, 410, 497, 531
SsiI CCGC 1 cut(s) 254
SspMI CTAG 2 cut(s) 161, 554
StyD4I CCNGG 1 cut(s) 316
TaaI ACNGT 2 cut(s) 30, 215
TaiI ACGT 1 cut(s) 312
TaqI TCGA 1 cut(s) 124
TasI AATT 4 cut(s) 83, 410, 497, 531
TatI WGTACW 2 cut(s) 56, 167
TfiI GAWTC 3 cut(s) 289, 422, 546
Tru1I TTAA 4 cut(s) 297, 327, 542, 603
Tru9I TTAA 4 cut(s) 297, 327, 542, 603
TseFI GTSAC 1 cut(s) 321
Tsp45I GTSAC 1 cut(s) 321
TspDTI ATGAA 1 cut(s) 486
XbaI TCTAGA 1 cut(s) 160
XspI CTAG 2 cut(s) 161, 554
Zsp2I ATGCAT 1 cut(s) 193
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.