FvH4_7g06860

lysine-specific demethylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000280
Physical Location & Seq
Reverse (-)
6869870 .. 6872284
2415 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g06860.t1

Sequence Viewer

Length: 2415 bp
ATGGCGCCGATCTGCAGAGACGAACTTTTCTCTCGGGTGTATTACAGAAAGCGCCGGAGGCAAGAGAACGGCGGCGAGGGTATTTTGGGAATTGGGGACCAAGATTCCACTGTGGCTGTGAAGCAGCTGCGTCAGATAAAGGAGGAGAAAGATTTGATCATTGGTGATCAACTTAAAGGGCAAAACGGGAAAGACAAGTCTCAAGAAAATGGAGGTTTTGATGGGATTGAAGAGGGTTTAGCGAAGAAGAAGAAGAAGAGATGTGGTGAAAAGGGCATGAAAACTGAGAGGTTTGAAGAAAATGGTGATGAAGATGGTTTAGTAAAGAGTAGAAGATGGAGCAAAGCCGATGTGTCCACAATGTGTCATCAGTGTCAGAGAAATGATAATGGGAGAGTTGTTCGCTGCGGTGGCTGTTCAAGAAGGGGAGATAGGAAGCGGTATTGTATTCCTTGCATAAAGAAATGGTACCCCAATTCATCCGAGGAGGATTTCGCAGAGGCTTGTCCTGTTTGCCTTGGGAATTGTAACTGCAAGGCGTGCCTGCGTTTGGATGTGCCTTTGAGATGCTCCAAGAATCGAGACTTGGAGATTGGGGAAGATGAGAGAGTGGAGCAGTGTAAGTATTTGGTGAACCGGTTGCTTCCTTATTTGAATAGGATTAATGATGAACAGGTGAGGGAGATGAACTTTGAGGCTGAGAAGCAAGGGTTGGTGGAGTTTGAAGGGATGGAAATCAAAAAGTCTGATTGCCGTGTTGGTGAGAGGATGTATTGCAACAACTGCAAGACTTCAATTTTCGACTTTCATAGAAGCTGTCCTGGATGCCAATATGATCTGTGTCTTAACTGTTGCCGGGAAATCCGTGGGGAGGAAATGGTTCAGAAACTGGGGTCTGAGTGTTTTGATGGTGAGGGAAAGAGTGGTGTGGGAACTAGGAGGCTGAGGTCTTTGTTTACAAAGACTAAGTTTGAATGGAAAGCAGATAAAGACGGAAGGATTCGTTGCCCACCAGAGCACATGGAGGGTTGTGGTAAGCATCACTTGGAACTTAGATGTTTGTTCCCTGGAAATAAAGTCATGGAGTTGGTAGACAAAGCTGAAAATATTAATGAGAACTATAAAAATTCATATGCAAGTAGTGAAACTTGTGAAGAAAGTTGTTCATGTAAAAATCCTGTGGATGATGTGAAGTGTAGAAAAGCAGCTTGTAGAGGTGATTCGAAGGACAACTATTTGTTCTGTCCAAGGGCTGATTGCATTCAACCGGAGGATTTTGTGCATTTTCAGAGGCATTGGATGAGGTGTGAGCCTGTTATTGTGAGCAATGCGCTTGAAAATGGTTCAGGGTTGAGTTGGGAACCCTTGGTCATGTGGAGGGCTTTTCGTCAAGTCAATAAAACCAAGCATGAGAAGGATTTAGAAGTGCAGGCCATTGATTGCTCGGATTGGTCTTTCATTGATGTCAATATGCACAAATTTTTTACTGGATATTCTGAAGGCATATTTAACAGAAAAGACTGCCCTCAGATCCTGAAACTTAAAGATTGGCCTCCCTCCACTGAATTTGATAAACGTCTTCCTCGCCATGGCAAGGAGTTTGTCTGTTGCTTGCCTTTCAAGGAATACACTCATCCATCAAGTAGTACCCTAAACCTTACTTGCCACTTGCCCAAAAGTGCTGTCAAACCTGACTTGGGGCCAAAGACATACATTGCGTATGGAGTTGCTCAGGAACTTGGACACGGAGATTCAGTGACAAAGCTTCACTGTGATATGTCTGATGCAGTGAACATTCTGACCCATGCTACTGAAGTGACCCTTAAGCCTAAACAGCTTGCTGCTATACAAGAGTTGAAAAGAAAGCACAGGGAGCAAGATCAAAAGGAGATTTTCGGAAACTTTGGCCCAAAGAGGCTCACTTGCAACGAAGACATTGATGATGCAGGTGAAGGGGGTGCTCTGTGGGACATTTTCCGTGTGCAGGATGTTCCAAAGCTGGAGCAATACATAAAGAAGCATTGTAGGGAATTCAGGCATATCCAGTGTAGGCCATTGAAGCAGGTGGTTCATCCCATACACGATCAGACTATTTATCTGACTGTGGAGCACAAAAGAAATCTTAAGGCGGAATGTGGGATTGAGCCATGGACATTTATCCAGAAACTTGGTGATGCGGTGTTCATTCCGGCAGGCTGTCCACATCAGGTGAGAAACTTAAAGTCTTGCATTAAAGTTGCTGTGGATTTTGTCTCCCCTGAAACCGTTGGCCAATGCTTTCGGTTGACAGAGGAGTTTCGCACTCTGCCTCCAGATCATAGGGCAAGCGAGGACAAGTTAGAGGTTAAAAAAATGATTGTTCATGCCGTCTCTGATGCTGTGAAGGTGATATCTAAGGTGAAGTGTAAGGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003824 GO:0005102 GO:0005488 GO:0005506 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006081 GO:0006325 GO:0006355 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0007154 GO:0007165 GO:0008134 GO:0008150 GO:0008152 GO:0008214 GO:0009058 GO:0009719 GO:0009725 GO:0009755 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0016043 GO:0016569 GO:0016570 GO:0016577 GO:0016999 GO:0017000 GO:0017144 GO:0019219 GO:0019222 GO:0019538 GO:0023052 GO:0030518 GO:0030521 GO:0030522 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031490 GO:0031974 GO:0031981 GO:0032451 GO:0032452 GO:0032454 GO:0032870 GO:0033169 GO:0033993 GO:0035257 GO:0035258 GO:0036211 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043401 GO:0043412 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0045893 GO:0045935 GO:0046184 GO:0046292 GO:0046293 GO:0046872 GO:0046914 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048545 GO:0050681 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0051427 GO:0051716 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070013 GO:0070076 GO:0070887 GO:0070988 GO:0071310 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0140096 GO:1901363 GO:1901564 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04714 map04714
Pfam Domains
Protein Families
JmjC zf-4CXXC_R1

Protein Analysis

805

Amino Acids

92.22

Weight (kDa)

8.31

Isoelectric Point (pI)

46.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
JmjC PF02373 646 - 750 3.7e-14 JmjC domain, hydroxylase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000280)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07610 AT3G07610 AT3G07610
fragaria_vesca FvH4_5g24540 FvH4_5g24540 FvH4_5g24540 FvH4_5g24540 FvH4_5g24640 FvH4_5g29990 FvH4_5g29990 FvH4_5g29990 FvH4_7g06860 FvH4_7g09570 FvH4_7g09571 FvH4_7g09571
malus_domestica MD05G1184100.v1.1 MD06G1012500.v1.1 MD07G1099600.v1.1 MD07G1099700.v1.1
prunus_persica Prupe.2G123400_v2.0.a1 Prupe.5G015100_v2.0.a1 Prupe.5G015100_v2.0.a1 Prupe.5G015100_v2.0.a1 Prupe.5G015100_v2.0.a1
pyrus_communis pycom06g01040 pycom10g12640
rosa_chinensis RchiOBHm_Chr1g0346431 RchiOBHm_Chr1g0346441 RchiOBHm_Chr3g0461961 RchiOBHm_Chr3g0461971 RchiOBHm_Chr3g0461991 RchiOBHm_Chr3g0462031 RchiOBHm_Chr3g0462041 RchiOBHm_Chr7g0215021 RchiOBHm_Chr7g0223871 RchiOBHm_Chr7g0223931 RchiOBHm_Chr7g0223991 RchiOBHm_Chr7g0224011 RchiOBHm_Chr7g0224041
rosa_laevigata RLG00000001919 RLG00000001920 RLG00000001924 RLG00000002699 RLG00000024884 RLG00000024888 RLG00000024889 RLG00000028799 RLG00000028800
rosa_multiflora Rmu_co8191480.1_g000001 Rmu_co8411417.1_g000001 Rmu_co8440445.1_g000001 Rmu_co8460737.1_g000001 Rmu_sc0003363.1_g000077 Rmu_sc0004308.1_g000026 Rmu_sc0004540.1_g000014 Rmu_sc0004540.1_g000026 Rmu_sc0007736.1_g000006 Rmu_sc0007736.1_g000008 Rmu_sc0007777.1_g000006 Rmu_sc0007777.1_g000009 Rmu_sc0007777.1_g000029 Rmu_sc0008432.1_g000002 Rmu_sc0008835.1_g000002 Rmu_sc0029902.1_g000002
rosa_roxburghii Rroxscaffold_3G00235160 Rroxscaffold_3G00235180 Rroxscaffold_3G00235210 Rroxscaffold_3G00244660 Rroxscaffold_4G00308520 Rroxscaffold_4G00308530 Rroxscaffold_6G00417830 Rroxscaffold_6G00417840
rosa_rugosa Rorug01G0179700 Rorug01G0179800 Rorug07G0149600 Rorug07G0221000 Rorug07G0221100 Rorug07G0221100
rosa_samantha Rh1AG199200 Rh1AG199300 Rh1AG199400 Rh1BG165100 Rh1BG165200 Rh1BG165300 Rh1BG165400 Rh1CG184300 Rh1CG184400 Rh1DG195800 Rh1DG195900 Rh1DG196000 Rh2BG420000 Rh3AG112800 Rh3BG115600 Rh3BG115700 Rh3BG115800 Rh3BG115900 Rh3CG117900 Rh3CG118300 Rh3CG118400 Rh3CG118500 Rh3DG117400 Rh3DG117500 Rh3DG117600 Rh6AG306600 Rh6BG312200 Rh7BG278000 Rh7BG355000 Rh7BG355400 Rh7BG355800 Rh7BG355900 Rh7BG356400 Rh7CG305900 Rh7CG382300 Rh7CG382800 Rh7CG383400 Rh7CG383500 Rh7DG290000 Rh7DG358300 Rh7DG358500 Rh7DG359600 Rh7DG359800
rosa_wichuraiana Rw0G007860 Rw1G016720 Rw1G016730 Rw7G024430 Rw7G030900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 1937, 2053
Acc36I ACCTGC 2 cut(s) 1937, 2053
Acc65I GGTACC 1 cut(s) 468
AccB1I GGYRCC 2 cut(s) 4, 468
AccI GTMKAC 1 cut(s) 1092
AciI CCGC 5 cut(s) 72, 408, 439, 2129, 2177
AclWI GGATC 1 cut(s) 1525
AcoI YGGCCR 1 cut(s) 2269
AcsI RAATTY 4 cut(s) 1126, 1478, 1565, 2030
AcuI CTGAAG 2 cut(s) 1518, 1833
AcyI GRCGYC 1 cut(s) 5
AdeI CACNNNGTG 1 cut(s) 363
AfaI GTAC 2 cut(s) 470, 1648
AfiI CCNNNNNNNGG 6 cut(s) 550, 871, 1589, 1594, 1697, 1984
AflII CTTAAG 2 cut(s) 1823, 2123
AgeI ACCGGT 1 cut(s) 636
AjnI CCWGG 2 cut(s) 820, 1066
AjuI GAANNNNNNNTTGG 4 cut(s) 569, 601, 695, 727
AluBI AGCT 7 cut(s) 127, 816, 1100, 1208, 1765, 1837, 1999
AluI AGCT 7 cut(s) 127, 816, 1100, 1208, 1765, 1837, 1999
Alw21I GWGCWC 3 cut(s) 1020, 1963, 2112
Alw26I GTCTC 5 cut(s) 12, 204, 576, 2257, 2374
AlwI GGATC 1 cut(s) 1525
AlwNI CAGNNNCTG 2 cut(s) 889, 1534
Ama87I CYCGRG 1 cut(s) 33
AoxI GGCC 6 cut(s) 1431, 1550, 1700, 1906, 2051, 2269
ApeKI GCWGC 5 cut(s) 124, 127, 405, 1205, 1841
ApoI RAATTY 4 cut(s) 1126, 1478, 1565, 2030
ArsI GACNNNNNNTTYG 2 cut(s) 1668, 1700
AseI ATTAAT 2 cut(s) 663, 1110
AsiGI ACCGGT 1 cut(s) 636
Asp700I GAANNNNTTC 1 cut(s) 879
Asp718I GGTACC 1 cut(s) 468
AspLEI GCGC 3 cut(s) 7, 54, 1333
AspS9I GGNCC 3 cut(s) 97, 1700, 1907
AsuC2I CCSGG 1 cut(s) 857
AsuII TTCGAA 1 cut(s) 1223
AvaI CYCGRG 1 cut(s) 33
AvaII GGWCC 1 cut(s) 97
BalI TGGCCA 1 cut(s) 2271
BanI GGYRCC 2 cut(s) 4, 468
BbsI GAAGAC 2 cut(s) 1571, 1938
Bbv12I GWGCWC 3 cut(s) 1020, 1963, 2112
BbvCI CCTCAGC 1 cut(s) 944
BbvI GCAGC 5 cut(s) 114, 136, 392, 1217, 1828
BccI CCATC 6 cut(s) 215, 308, 330, 724, 902, 1645
BceAI ACGGC 3 cut(s) 85, 738, 2351
BciT130I CCWGG 2 cut(s) 822, 1068
BclI TGATCA 2 cut(s) 156, 166
BcnI CCSGG 1 cut(s) 857
BcoDI GTCTC 5 cut(s) 12, 204, 576, 2257, 2374
BfaI CTAG 1 cut(s) 936
BfmI CTRYAG 1 cut(s) 13
BfoI RGCGCY 2 cut(s) 8, 55
BfrI CTTAAG 2 cut(s) 1823, 2123
BfuAI ACCTGC 2 cut(s) 1937, 2053
BisI GCNGC 6 cut(s) 73, 125, 128, 406, 1206, 1842
BlsI GCNGC 6 cut(s) 74, 126, 129, 407, 1207, 1843
Bme1390I CCNGG 3 cut(s) 822, 857, 1068
Bme18I GGWCC 1 cut(s) 97
BmeT110I CYCGRG 1 cut(s) 33
BmgT120I GGNCC 3 cut(s) 97, 1700, 1907
BmiI GGNNCC 5 cut(s) 6, 98, 470, 1362, 1701
BmrFI CCNGG 3 cut(s) 822, 857, 1068
BmrI ACTGGG 1 cut(s) 899
BmsI GCATC 7 cut(s) 557, 815, 1048, 1774, 1933, 2164, 2365
BmuI ACTGGG 1 cut(s) 899
BpiI GAAGAC 2 cut(s) 1571, 1938
BpmI CTGGAG 2 cut(s) 2021, 2295
Bpu10I CCTNAGC 2 cut(s) 944, 1731
Bpu14I TTCGAA 1 cut(s) 1223
BpuEI CTTGAG 1 cut(s) 186
BpuMI CCSGG 1 cut(s) 857
BsaBI GATNNNNATC 1 cut(s) 734
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 8 cut(s) 483, 517, 865, 1066, 1247, 1365, 1588, 2147
BsaWI WCCGGW 2 cut(s) 636, 1267
BsaXI ACNNNNNCTCC 4 cut(s) 1740, 1770, 2293, 2323
Bsc4I CCNNNNNNNGG 6 cut(s) 550, 871, 1589, 1594, 1697, 1984
Bse118I RCCGGY 1 cut(s) 636
Bse1I ACTGG 3 cut(s) 894, 1492, 2044
Bse3DI GCAATG 2 cut(s) 1333, 1713
Bse8I GATNNNNATC 1 cut(s) 734
BseBI CCWGG 2 cut(s) 822, 1068
BseDI CCNNGG 8 cut(s) 483, 517, 865, 1066, 1247, 1365, 1588, 2147
BseJI GATNNNNATC 1 cut(s) 734
BseLI CCNNNNNNNGG 6 cut(s) 550, 871, 1589, 1594, 1697, 1984
BseMI GCAATG 2 cut(s) 1333, 1713
BseMII CTCAG 6 cut(s) 276, 690, 888, 935, 1541, 1745
BseNI ACTGG 3 cut(s) 894, 1492, 2044
BseRI GAGGAG 3 cut(s) 158, 500, 2306
BseXI GCAGC 5 cut(s) 114, 136, 392, 1217, 1828
BsgI GTGCAG 2 cut(s) 1448, 2003
BshFI GGCC 6 cut(s) 1433, 1552, 1702, 1908, 2053, 2271
BshNI GGYRCC 2 cut(s) 4, 468
BshTI ACCGGT 1 cut(s) 636
BsiHKAI GWGCWC 3 cut(s) 1020, 1963, 2112
BsiHKCI CYCGRG 1 cut(s) 33
BsiSI CCGG 5 cut(s) 55, 637, 856, 1268, 2189
BslFI GGGAC 2 cut(s) 110, 1982
BslI CCNNNNNNNGG 6 cut(s) 550, 871, 1589, 1594, 1697, 1984
BsmAI GTCTC 5 cut(s) 12, 204, 576, 2257, 2374
BsmBI CGTCTC 2 cut(s) 12, 2374
BsmFI GGGAC 2 cut(s) 110, 1982
BsmI GAATGC 1 cut(s) 1260
BsnI GGCC 6 cut(s) 1433, 1552, 1702, 1908, 2053, 2271
BsoBI CYCGRG 1 cut(s) 33
Bsp119I TTCGAA 1 cut(s) 1223
Bsp1286I GDGCHC 3 cut(s) 1020, 1963, 2112
Bsp143I GATC 8 cut(s) 9, 156, 166, 835, 1530, 1879, 2083, 2314
Bsp19I CCATGG 2 cut(s) 1588, 2147
BspACI CCGC 5 cut(s) 72, 408, 439, 2129, 2177
BspANI GGCC 6 cut(s) 1433, 1552, 1702, 1908, 2053, 2271
BspCNI CTCAG 6 cut(s) 277, 691, 889, 936, 1540, 1744
BspLI GGNNCC 5 cut(s) 6, 98, 470, 1362, 1701
BspMAI CTGCAG 1 cut(s) 17
BspMI ACCTGC 2 cut(s) 1937, 2053
BspPI GGATC 1 cut(s) 1525
BspT104I TTCGAA 1 cut(s) 1223
BspT107I GGYRCC 2 cut(s) 4, 468
BspTI CTTAAG 2 cut(s) 1823, 2123
BsrDI GCAATG 2 cut(s) 1333, 1713
BsrFI RCCGGY 1 cut(s) 636
BsrI ACTGG 3 cut(s) 894, 1492, 2044
BssAI RCCGGY 1 cut(s) 636
BssECI CCNNGG 8 cut(s) 483, 517, 865, 1066, 1247, 1365, 1588, 2147
BssMI GATC 8 cut(s) 9, 156, 166, 835, 1530, 1879, 2083, 2314
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 5 cut(s) 517, 1247, 1365, 1588, 2147
Bst2UI CCWGG 2 cut(s) 822, 1068
Bst4CI ACNGT 5 cut(s) 112, 851, 1772, 2104, 2266
Bst6I CTCTTC 2 cut(s) 225, 251
BstACI GRCGYC 1 cut(s) 5
BstAFI CTTAAG 2 cut(s) 1823, 2123
BstAPI GCANNNNNTGC 2 cut(s) 540, 783
BstBI TTCGAA 1 cut(s) 1223
BstC8I GCNNGC 7 cut(s) 541, 545, 1431, 1613, 1839, 2194, 2326
BstDEI CTNAG 9 cut(s) 285, 699, 897, 944, 966, 1052, 1527, 1731, 2394
BstDSI CCRYGG 3 cut(s) 865, 1588, 2147
BstH2I RGCGCY 2 cut(s) 8, 55
BstHHI GCGC 3 cut(s) 7, 54, 1333
BstKTI GATC 8 cut(s) 12, 159, 169, 838, 1533, 1882, 2086, 2317
BstMAI GTCTC 5 cut(s) 12, 204, 576, 2257, 2374
BstMBI GATC 8 cut(s) 9, 156, 166, 835, 1530, 1879, 2083, 2314
BstMWI GCNNNNNNNGC 7 cut(s) 58, 411, 540, 783, 1834, 1873, 2059
BstNI CCWGG 2 cut(s) 822, 1068
BstSCI CCNGG 3 cut(s) 820, 855, 1066
BstSFI CTRYAG 1 cut(s) 13
BstV1I GCAGC 5 cut(s) 114, 136, 392, 1217, 1828
BstV2I GAAGAC 2 cut(s) 1571, 1938
BstX2I RGATCY 1 cut(s) 1530
BstXI CCANNNNNNTGG 1 cut(s) 2168
BstYI RGATCY 1 cut(s) 1530
BsuRI GGCC 6 cut(s) 1433, 1552, 1702, 1908, 2053, 2271
BtgI CCRYGG 3 cut(s) 865, 1588, 2147
BtsI GCAGTG 2 cut(s) 623, 1794
BtsIMutI CAGTG 8 cut(s) 108, 377, 623, 1560, 1761, 1768, 1794, 2051
BveI ACCTGC 2 cut(s) 1937, 2053
Cac8I GCNNGC 7 cut(s) 541, 545, 1431, 1613, 1839, 2194, 2326
CaiI CAGNNNCTG 2 cut(s) 889, 1534
CfoI GCGC 3 cut(s) 7, 54, 1333
Cfr10I RCCGGY 1 cut(s) 636
Cfr13I GGNCC 3 cut(s) 97, 1700, 1907
CseI GACGC 1 cut(s) 119
Csp6I GTAC 2 cut(s) 469, 1647
CspAI ACCGGT 1 cut(s) 636
CspCI CAANNNNNGTGG 2 cut(s) 1549, 1584
CviQI GTAC 2 cut(s) 469, 1647
DdeI CTNAG 9 cut(s) 285, 699, 897, 944, 966, 1052, 1527, 1731, 2394
DinI GGCGCC 1 cut(s) 6
DpnI GATC 8 cut(s) 11, 158, 168, 837, 1532, 1881, 2085, 2316
DpnII GATC 8 cut(s) 9, 156, 166, 835, 1530, 1879, 2083, 2314
DraIII CACNNNGTG 1 cut(s) 363
EaeI YGGCCR 1 cut(s) 2269
Eam1104I CTCTTC 2 cut(s) 225, 251
EarI CTCTTC 2 cut(s) 225, 251
EciI GGCGGA 1 cut(s) 2144
Eco130I CCWWGG 5 cut(s) 517, 1247, 1365, 1588, 2147
Eco32I GATATC 1 cut(s) 2391
Eco47I GGWCC 1 cut(s) 97
Eco57I CTGAAG 2 cut(s) 1518, 1833
Eco88I CYCGRG 1 cut(s) 33
EcoRI GAATTC 1 cut(s) 2030
EcoRII CCWGG 2 cut(s) 820, 1066
EcoRV GATATC 1 cut(s) 2391
EcoT14I CCWWGG 5 cut(s) 517, 1247, 1365, 1588, 2147
EgeI GGCGCC 1 cut(s) 6
EheI GGCGCC 1 cut(s) 6
ErhI CCWWGG 5 cut(s) 517, 1247, 1365, 1588, 2147
Esp3I CGTCTC 2 cut(s) 12, 2374
FalI AAGNNNNNCTT 4 cut(s) 1028, 1060, 1806, 1838
FaqI GGGAC 2 cut(s) 110, 1982
FauNDI CATATG 1 cut(s) 1132
FbaI TGATCA 2 cut(s) 156, 166
FblI GTMKAC 1 cut(s) 1092
Fnu4HI GCNGC 6 cut(s) 73, 125, 128, 406, 1206, 1842
Fsp4HI GCNGC 6 cut(s) 73, 125, 128, 406, 1206, 1842
FspBI CTAG 1 cut(s) 936
GlaI GCGC 3 cut(s) 6, 53, 1332
GluI GCNGC 6 cut(s) 73, 125, 128, 406, 1206, 1842
GsuI CTGGAG 2 cut(s) 2021, 2295
HaeII RGCGCY 2 cut(s) 8, 55
HaeIII GGCC 6 cut(s) 1433, 1552, 1702, 1908, 2053, 2271
HapII CCGG 5 cut(s) 55, 637, 856, 1268, 2189
HgaI GACGC 1 cut(s) 119
HhaI GCGC 3 cut(s) 7, 54, 1333
Hin1I GRCGYC 1 cut(s) 5
Hin6I GCGC 3 cut(s) 5, 52, 1331
HinP1I GCGC 3 cut(s) 5, 52, 1331
HincII GTYRAC 1 cut(s) 2286
HindII GTYRAC 1 cut(s) 2286
HindIII AAGCTT 1 cut(s) 1763
HinfI GANTC 5 cut(s) 104, 577, 1000, 1220, 1751
HpaII CCGG 5 cut(s) 55, 637, 856, 1268, 2189
Hpy166II GTNNAC 7 cut(s) 357, 634, 957, 1093, 1792, 2201, 2286
Hpy188III TCNNGA 7 cut(s) 203, 420, 581, 1534, 1733, 2161, 2312
Hpy8I GTNNAC 7 cut(s) 357, 634, 957, 1093, 1792, 2201, 2286
HpyAV CCTTC 8 cut(s) 417, 719, 990, 1219, 1408, 1493, 1946, 2377
HpyCH4III ACNGT 5 cut(s) 112, 851, 1772, 2104, 2266
HpyCH4IV ACGT 1 cut(s) 1576
HpyF10VI GCNNNNNNNGC 7 cut(s) 58, 411, 540, 783, 1834, 1873, 2059
HpyF3I CTNAG 9 cut(s) 285, 699, 897, 944, 966, 1052, 1527, 1731, 2394
HpySE526I ACGT 1 cut(s) 1576
Hsp92I GRCGYC 1 cut(s) 5
HspAI GCGC 3 cut(s) 5, 52, 1331
KasI GGCGCC 1 cut(s) 4
KpnI GGTACC 1 cut(s) 472
Ksp22I TGATCA 2 cut(s) 156, 166
Kzo9I GATC 8 cut(s) 9, 156, 166, 835, 1530, 1879, 2083, 2314
LmnI GCTCC 6 cut(s) 339, 575, 613, 1873, 2002, 2107
Lsp1109I GCAGC 5 cut(s) 114, 136, 392, 1217, 1828
LweI GCATC 7 cut(s) 557, 815, 1048, 1774, 1933, 2164, 2365
MaeI CTAG 1 cut(s) 936
MaeII ACGT 1 cut(s) 1576
MaeIII GTNAC 3 cut(s) 527, 1756, 1816
MalI GATC 8 cut(s) 11, 158, 168, 837, 1532, 1881, 2085, 2316
MboI GATC 8 cut(s) 9, 156, 166, 835, 1530, 1879, 2083, 2314
MflI RGATCY 1 cut(s) 1530
MhlI GDGCHC 3 cut(s) 1020, 1963, 2112
MlsI TGGCCA 1 cut(s) 2271
MluCI AATT 8 cut(s) 90, 475, 523, 795, 1126, 1478, 1565, 2030
MluNI TGGCCA 1 cut(s) 2271
Mly113I GGCGCC 1 cut(s) 5
Mox20I TGGCCA 1 cut(s) 2271
MroXI GAANNNNTTC 1 cut(s) 879
MscI TGGCCA 1 cut(s) 2271
Msp20I TGGCCA 1 cut(s) 2271
MspA1I CMGCKG 1 cut(s) 127
MspCI CTTAAG 2 cut(s) 1823, 2123
MspI CCGG 5 cut(s) 55, 637, 856, 1268, 2189
MspR9I CCNGG 3 cut(s) 822, 857, 1068
Mva1269I GAATGC 1 cut(s) 1260
MvaI CCWGG 2 cut(s) 822, 1068
MwoI GCNNNNNNNGC 7 cut(s) 58, 411, 540, 783, 1834, 1873, 2059
NarI GGCGCC 1 cut(s) 5
NciI CCSGG 1 cut(s) 857
NcoI CCATGG 2 cut(s) 1588, 2147
NdeI CATATG 1 cut(s) 1132
NdeII GATC 8 cut(s) 9, 156, 166, 835, 1530, 1879, 2083, 2314
NlaIV GGNNCC 5 cut(s) 6, 98, 470, 1362, 1701
NmuCI GTSAC 2 cut(s) 1756, 1816
NspV TTCGAA 1 cut(s) 1223
PaqCI CACCTGC 2 cut(s) 1937, 2053
PctI GAATGC 1 cut(s) 1260
PdmI GAANNNNTTC 1 cut(s) 879
PfeI GAWTC 5 cut(s) 104, 577, 1000, 1220, 1751
PfoI TCCNGGA 1 cut(s) 820
PinAI ACCGGT 1 cut(s) 636
PkrI GCNGC 6 cut(s) 74, 126, 129, 407, 1207, 1843
PluTI GGCGCC 1 cut(s) 8
PshBI ATTAAT 2 cut(s) 663, 1110
Psp6I CCWGG 2 cut(s) 820, 1066
PspGI CCWGG 2 cut(s) 820, 1066
PspN4I GGNNCC 5 cut(s) 6, 98, 470, 1362, 1701
PspPI GGNCC 3 cut(s) 97, 1700, 1907
PstI CTGCAG 1 cut(s) 17
PstNI CAGNNNCTG 2 cut(s) 889, 1534
PsuI RGATCY 1 cut(s) 1530
PvuII CAGCTG 1 cut(s) 127
RsaI GTAC 2 cut(s) 470, 1648
RsaNI GTAC 2 cut(s) 469, 1647
SatI GCNGC 6 cut(s) 73, 125, 128, 406, 1206, 1842
Sau3AI GATC 8 cut(s) 9, 156, 166, 835, 1530, 1879, 2083, 2314
Sau96I GGNCC 3 cut(s) 97, 1700, 1907
ScrFI CCNGG 3 cut(s) 822, 857, 1068
SduI GDGCHC 3 cut(s) 1020, 1963, 2112
SfaNI GCATC 7 cut(s) 557, 815, 1048, 1774, 1933, 2164, 2365
SfcI CTRYAG 1 cut(s) 13
SfoI GGCGCC 1 cut(s) 6
SfuI TTCGAA 1 cut(s) 1223
SinI GGWCC 1 cut(s) 97
SmlI CTYRAG 3 cut(s) 201, 1823, 2123
SmoI CTYRAG 3 cut(s) 201, 1823, 2123
Sse9I AATT 8 cut(s) 90, 475, 523, 795, 1126, 1478, 1565, 2030
SsiI CCGC 5 cut(s) 72, 408, 439, 2129, 2177
SspDI GGCGCC 1 cut(s) 4
SspI AATATT 1 cut(s) 1108
SspMI CTAG 1 cut(s) 936
StyD4I CCNGG 3 cut(s) 820, 855, 1066
StyI CCWWGG 5 cut(s) 517, 1247, 1365, 1588, 2147
TaaI ACNGT 5 cut(s) 112, 851, 1772, 2104, 2266
TaiI ACGT 1 cut(s) 1579
TaqI TCGA 3 cut(s) 580, 801, 1223
TasI AATT 8 cut(s) 90, 475, 523, 795, 1126, 1478, 1565, 2030
TauI GCSGC 1 cut(s) 75
TfiI GAWTC 5 cut(s) 104, 577, 1000, 1220, 1751
TscAI CASTG 8 cut(s) 115, 377, 623, 1567, 1761, 1775, 1794, 2051
TseFI GTSAC 2 cut(s) 1756, 1816
TseI GCWGC 5 cut(s) 124, 127, 405, 1205, 1841
Tsp45I GTSAC 2 cut(s) 1756, 1816
TspGWI ACGGA 4 cut(s) 854, 1008, 1761, 1967
TspRI CASTG 8 cut(s) 115, 377, 623, 1567, 1761, 1775, 1794, 2051
Vha464I CTTAAG 2 cut(s) 1823, 2123
VpaK11BI GGWCC 1 cut(s) 97
VspI ATTAAT 2 cut(s) 663, 1110
XapI RAATTY 4 cut(s) 1126, 1478, 1565, 2030
XmiI GTMKAC 1 cut(s) 1092
XmnI GAANNNNTTC 1 cut(s) 879
XspI CTAG 1 cut(s) 936
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.