Rh6AG306600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000280
Physical Location & Seq
Reverse (-)
50458210 .. 50459957
1748 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG306600.1

Sequence Viewer

Length: 309 bp
ATGCTGTGTCAAGCCCACCCGAAGTCCCAGACAACAAAACTTGAGAACCCCCGAGTCCCCGACGAAGACTCTCACACTCCCTCTCAGTCTCTCACGTACTATACTGCTCTAAGAGATCAAACCTTAGATGTTAGATCCATAGTTTTGTCTTCTACTCTTCTTCTTCTTCTTCTTCTTCTTCAATTTGGGGCAATCAATCAATTCAATTGGATTGAGGATTGTTCTGTGTGCCATCGATGTGAGAGGAATGATGACGGTAGAGTTATTTGCGGTGGAACTTGCTTACGAAAATGGTCATATAAATTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

102

Amino Acids

11.67

Weight (kDa)

6.8

Isoelectric Point (pI)

41.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000280)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07610 AT3G07610 AT3G07610
fragaria_vesca FvH4_5g24540 FvH4_5g24540 FvH4_5g24540 FvH4_5g24540 FvH4_5g24640 FvH4_5g29990 FvH4_5g29990 FvH4_5g29990 FvH4_7g06860 FvH4_7g09570 FvH4_7g09571 FvH4_7g09571
malus_domestica MD05G1184100.v1.1 MD06G1012500.v1.1 MD07G1099600.v1.1 MD07G1099700.v1.1
prunus_persica Prupe.2G123400_v2.0.a1 Prupe.5G015100_v2.0.a1 Prupe.5G015100_v2.0.a1 Prupe.5G015100_v2.0.a1 Prupe.5G015100_v2.0.a1
pyrus_communis pycom06g01040 pycom10g12640
rosa_chinensis RchiOBHm_Chr1g0346431 RchiOBHm_Chr1g0346441 RchiOBHm_Chr3g0461961 RchiOBHm_Chr3g0461971 RchiOBHm_Chr3g0461991 RchiOBHm_Chr3g0462031 RchiOBHm_Chr3g0462041 RchiOBHm_Chr7g0215021 RchiOBHm_Chr7g0223871 RchiOBHm_Chr7g0223931 RchiOBHm_Chr7g0223991 RchiOBHm_Chr7g0224011 RchiOBHm_Chr7g0224041
rosa_laevigata RLG00000001919 RLG00000001920 RLG00000001924 RLG00000002699 RLG00000024884 RLG00000024888 RLG00000024889 RLG00000028799 RLG00000028800
rosa_multiflora Rmu_co8191480.1_g000001 Rmu_co8411417.1_g000001 Rmu_co8440445.1_g000001 Rmu_co8460737.1_g000001 Rmu_sc0003363.1_g000077 Rmu_sc0004308.1_g000026 Rmu_sc0004540.1_g000014 Rmu_sc0004540.1_g000026 Rmu_sc0007736.1_g000006 Rmu_sc0007736.1_g000008 Rmu_sc0007777.1_g000006 Rmu_sc0007777.1_g000009 Rmu_sc0007777.1_g000029 Rmu_sc0008432.1_g000002 Rmu_sc0008835.1_g000002 Rmu_sc0029902.1_g000002
rosa_roxburghii Rroxscaffold_3G00235160 Rroxscaffold_3G00235180 Rroxscaffold_3G00235210 Rroxscaffold_3G00244660 Rroxscaffold_4G00308520 Rroxscaffold_4G00308530 Rroxscaffold_6G00417830 Rroxscaffold_6G00417840
rosa_rugosa Rorug01G0179700 Rorug01G0179800 Rorug07G0149600 Rorug07G0221000 Rorug07G0221100 Rorug07G0221100
rosa_samantha Rh1AG199200 Rh1AG199300 Rh1AG199400 Rh1BG165100 Rh1BG165200 Rh1BG165300 Rh1BG165400 Rh1CG184300 Rh1CG184400 Rh1DG195800 Rh1DG195900 Rh1DG196000 Rh2BG420000 Rh3AG112800 Rh3BG115600 Rh3BG115700 Rh3BG115800 Rh3BG115900 Rh3CG117900 Rh3CG118300 Rh3CG118400 Rh3CG118500 Rh3DG117400 Rh3DG117500 Rh3DG117600 Rh6AG306600 Rh6BG312200 Rh7BG278000 Rh7BG355000 Rh7BG355400 Rh7BG355800 Rh7BG355900 Rh7BG356400 Rh7CG305900 Rh7CG382300 Rh7CG382800 Rh7CG383400 Rh7CG383500 Rh7DG290000 Rh7DG358300 Rh7DG358500 Rh7DG359600 Rh7DG359800
rosa_wichuraiana Rw0G007860 Rw1G016720 Rw1G016730 Rw7G024430 Rw7G030900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 270
AclWI GGATC 1 cut(s) 129
AfaI GTAC 1 cut(s) 98
AgsI TTSAA 2 cut(s) 182, 205
Alw26I GTCTC 1 cut(s) 93
AlwI GGATC 1 cut(s) 129
Ama87I CYCGRG 1 cut(s) 51
AvaI CYCGRG 1 cut(s) 51
BbsI GAAGAC 2 cut(s) 72, 141
BccI CCATC 1 cut(s) 240
BcoDI GTCTC 1 cut(s) 93
BmeT110I CYCGRG 1 cut(s) 51
BpiI GAAGAC 2 cut(s) 72, 141
BpuEI CTTGAG 1 cut(s) 62
Bsa29I ATCGAT 1 cut(s) 235
BsaAI YACGTR 1 cut(s) 96
BseCI ATCGAT 1 cut(s) 235
BseMII CTCAG 1 cut(s) 98
BshVI ATCGAT 1 cut(s) 235
BsiHKCI CYCGRG 1 cut(s) 51
BslFI GGGAC 2 cut(s) 10, 41
BsmAI GTCTC 1 cut(s) 93
BsmFI GGGAC 2 cut(s) 10, 41
BsoBI CYCGRG 1 cut(s) 51
Bsp143I GATC 2 cut(s) 115, 134
BspACI CCGC 1 cut(s) 270
BspCNI CTCAG 1 cut(s) 97
BspDI ATCGAT 1 cut(s) 235
BspPI GGATC 1 cut(s) 129
BssMI GATC 2 cut(s) 115, 134
Bst4CI ACNGT 1 cut(s) 257
Bst6I CTCTTC 1 cut(s) 162
BstBAI YACGTR 1 cut(s) 96
BstDEI CTNAG 3 cut(s) 84, 110, 124
BstKTI GATC 2 cut(s) 118, 137
BstMAI GTCTC 1 cut(s) 93
BstMBI GATC 2 cut(s) 115, 134
BstV2I GAAGAC 2 cut(s) 72, 141
BstX2I RGATCY 1 cut(s) 134
BstYI RGATCY 1 cut(s) 134
Bsu15I ATCGAT 1 cut(s) 235
BsuTUI ATCGAT 1 cut(s) 235
ClaI ATCGAT 1 cut(s) 235
Csp6I GTAC 1 cut(s) 97
CviJI RGCY 1 cut(s) 14
CviKI_1 RGCY 1 cut(s) 14
CviQI GTAC 1 cut(s) 97
DdeI CTNAG 3 cut(s) 84, 110, 124
DpnI GATC 2 cut(s) 117, 136
DpnII GATC 2 cut(s) 115, 134
Eam1104I CTCTTC 1 cut(s) 162
EarI CTCTTC 1 cut(s) 162
Eco88I CYCGRG 1 cut(s) 51
FaiI YATR 5 cut(s) 102, 140, 298, 300, 307
FaqI GGGAC 2 cut(s) 10, 41
HinfI GANTC 2 cut(s) 54, 68
Hpy99I CGWCG 1 cut(s) 65
HpyCH4III ACNGT 1 cut(s) 257
HpyCH4IV ACGT 1 cut(s) 95
HpyF3I CTNAG 3 cut(s) 84, 110, 124
HpySE526I ACGT 1 cut(s) 95
Kzo9I GATC 2 cut(s) 115, 134
LpnPI CCDG 1 cut(s) 41
MaeII ACGT 1 cut(s) 95
MalI GATC 2 cut(s) 117, 136
MboI GATC 2 cut(s) 115, 134
MfeI CAATTG 1 cut(s) 205
MflI RGATCY 1 cut(s) 134
MluCI AATT 4 cut(s) 182, 200, 205, 302
MlyI GAGTC 2 cut(s) 62, 63
MnlI CCTC 3 cut(s) 91, 208, 237
MslI CAYNNNNRTG 1 cut(s) 237
MunI CAATTG 1 cut(s) 205
NdeII GATC 2 cut(s) 115, 134
PleI GAGTC 2 cut(s) 62, 62
PpsI GAGTC 2 cut(s) 62, 62
Ppu21I YACGTR 1 cut(s) 96
PsuI RGATCY 1 cut(s) 134
RsaI GTAC 1 cut(s) 98
RsaNI GTAC 1 cut(s) 97
RseI CAYNNNNRTG 1 cut(s) 237
Sau3AI GATC 2 cut(s) 115, 134
SchI GAGTC 2 cut(s) 62, 63
SetI ASST 2 cut(s) 98, 125
SgeI CNNG 9 cut(s) 23, 31, 40, 53, 63, 65, 71, 106, 291
SmiMI CAYNNNNRTG 1 cut(s) 237
SmlI CTYRAG 1 cut(s) 41
SmoI CTYRAG 1 cut(s) 41
Sse9I AATT 4 cut(s) 182, 200, 205, 302
SsiI CCGC 1 cut(s) 270
TaaI ACNGT 1 cut(s) 257
TaiI ACGT 1 cut(s) 98
TaqI TCGA 1 cut(s) 235
TasI AATT 4 cut(s) 182, 200, 205, 302
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.