FvH4_7g09571

lysine-specific demethylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000280
Physical Location & Seq
Reverse (-)
9197112 .. 9200440
3329 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g09571.t1

Sequence Viewer

Length: 756 bp
ATGTGCCATCAGTGTCAGAGGAATGATAGGGCCAGAGTTGTTAACTGCACAAATTGCAAGCGAAAGCGGTTTTGTGTGTCTTGCATTCAGAAATGGTATCCCCAGATGTCAGAGGAGACTATTGCTGACGCTTGTCCTGTATGCCTTGGAAATTGCAATTGCAAAGCGTGCTTGTGTTTGGAAGGAACTAATGATATTTTGAATAGCAAGCTTGAATTGCATGTTAGCAAAGATGAAGAAGTGGAGCACTCTAAGTATTTGCTTGAAGCACTGCTTCCATTCTTGAAGAGATTTAATGATGAACAAGTTATTGAGCTGGAGATGGAGGCTAGGAGGCAAGGAAAATATCTATCGGAGCTAAAAATACAAAGGTCGGACAGCTCTCCGAATGATCGAGTGTACTGCGACAACTGCAATACATCTATCATTGATTTCCACAGAAGCTGTCCTATATGTTCATATGACCTTTGCCTTATCTGCTCCCGAGAGATTCGGGAGGGGAACCTGCAAGGAAGTGCAGAGGAAGTGGTTGATGAGTATATTAATCGAGGTCTAGACTATTTACATGGTGGCATAGGAAACTTAATCAAAAAGCCTTCTGAAACTAAACTCAAGTGTTGTGCAAGGTCAACATCTAAGTGGAAAGTAAACAAAGATCAAAGTATTCTTTGCCCCGCAAAAGACATGGACGGCTGTGCTTGTAGTGTTCTAGACTCAGATGCATATTTCCTGAAAACCACATTAGAGAGTTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003824 GO:0005102 GO:0005488 GO:0005506 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006081 GO:0006325 GO:0006355 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0007154 GO:0007165 GO:0008134 GO:0008150 GO:0008152 GO:0008214 GO:0009058 GO:0009719 GO:0009725 GO:0009755 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0016043 GO:0016569 GO:0016570 GO:0016577 GO:0016999 GO:0017000 GO:0017144 GO:0019219 GO:0019222 GO:0019538 GO:0023052 GO:0030518 GO:0030521 GO:0030522 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031490 GO:0031974 GO:0031981 GO:0032451 GO:0032452 GO:0032454 GO:0032870 GO:0033169 GO:0033993 GO:0035257 GO:0035258 GO:0036211 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043401 GO:0043412 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0045893 GO:0045935 GO:0046184 GO:0046292 GO:0046293 GO:0046872 GO:0046914 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048545 GO:0050681 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0051427 GO:0051716 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070013 GO:0070076 GO:0070887 GO:0070988 GO:0071310 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0140096 GO:1901363 GO:1901564 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04714 map04714
Pfam Domains
Protein Families
JmjC zf-4CXXC_R1

Protein Analysis

252

Amino Acids

28.65

Weight (kDa)

6.01

Isoelectric Point (pI)

56.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-4CXXC_R1 PF10497 2 - 63 8.2e-06 Zinc-finger domain of monoamine-oxidase A repressor R1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000280)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07610 AT3G07610 AT3G07610
fragaria_vesca FvH4_5g24540 FvH4_5g24540 FvH4_5g24540 FvH4_5g24540 FvH4_5g24640 FvH4_5g29990 FvH4_5g29990 FvH4_5g29990 FvH4_7g06860 FvH4_7g09570 FvH4_7g09571 FvH4_7g09571
malus_domestica MD05G1184100.v1.1 MD06G1012500.v1.1 MD07G1099600.v1.1 MD07G1099700.v1.1
prunus_persica Prupe.2G123400_v2.0.a1 Prupe.5G015100_v2.0.a1 Prupe.5G015100_v2.0.a1 Prupe.5G015100_v2.0.a1 Prupe.5G015100_v2.0.a1
pyrus_communis pycom06g01040 pycom10g12640
rosa_chinensis RchiOBHm_Chr1g0346431 RchiOBHm_Chr1g0346441 RchiOBHm_Chr3g0461961 RchiOBHm_Chr3g0461971 RchiOBHm_Chr3g0461991 RchiOBHm_Chr3g0462031 RchiOBHm_Chr3g0462041 RchiOBHm_Chr7g0215021 RchiOBHm_Chr7g0223871 RchiOBHm_Chr7g0223931 RchiOBHm_Chr7g0223991 RchiOBHm_Chr7g0224011 RchiOBHm_Chr7g0224041
rosa_laevigata RLG00000001919 RLG00000001920 RLG00000001924 RLG00000002699 RLG00000024884 RLG00000024888 RLG00000024889 RLG00000028799 RLG00000028800
rosa_multiflora Rmu_co8191480.1_g000001 Rmu_co8411417.1_g000001 Rmu_co8440445.1_g000001 Rmu_co8460737.1_g000001 Rmu_sc0003363.1_g000077 Rmu_sc0004308.1_g000026 Rmu_sc0004540.1_g000014 Rmu_sc0004540.1_g000026 Rmu_sc0007736.1_g000006 Rmu_sc0007736.1_g000008 Rmu_sc0007777.1_g000006 Rmu_sc0007777.1_g000009 Rmu_sc0007777.1_g000029 Rmu_sc0008432.1_g000002 Rmu_sc0008835.1_g000002 Rmu_sc0029902.1_g000002
rosa_roxburghii Rroxscaffold_3G00235160 Rroxscaffold_3G00235180 Rroxscaffold_3G00235210 Rroxscaffold_3G00244660 Rroxscaffold_4G00308520 Rroxscaffold_4G00308530 Rroxscaffold_6G00417830 Rroxscaffold_6G00417840
rosa_rugosa Rorug01G0179700 Rorug01G0179800 Rorug07G0149600 Rorug07G0221000 Rorug07G0221100 Rorug07G0221100
rosa_samantha Rh1AG199200 Rh1AG199300 Rh1AG199400 Rh1BG165100 Rh1BG165200 Rh1BG165300 Rh1BG165400 Rh1CG184300 Rh1CG184400 Rh1DG195800 Rh1DG195900 Rh1DG196000 Rh2BG420000 Rh3AG112800 Rh3BG115600 Rh3BG115700 Rh3BG115800 Rh3BG115900 Rh3CG117900 Rh3CG118300 Rh3CG118400 Rh3CG118500 Rh3DG117400 Rh3DG117500 Rh3DG117600 Rh6AG306600 Rh6BG312200 Rh7BG278000 Rh7BG355000 Rh7BG355400 Rh7BG355800 Rh7BG355900 Rh7BG356400 Rh7CG305900 Rh7CG382300 Rh7CG382800 Rh7CG383400 Rh7CG383500 Rh7DG290000 Rh7DG358300 Rh7DG358500 Rh7DG359600 Rh7DG359800
rosa_wichuraiana Rw0G007860 Rw1G016720 Rw1G016730 Rw7G024430 Rw7G030900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 513
AciI CCGC 2 cut(s) 67, 675
AfaI GTAC 1 cut(s) 401
AgsI TTSAA 4 cut(s) 202, 215, 266, 286
AluBI AGCT 5 cut(s) 211, 316, 358, 381, 444
AluI AGCT 5 cut(s) 211, 316, 358, 381, 444
Alw21I GWGCWC 1 cut(s) 249
Alw26I GTCTC 1 cut(s) 110
AlwNI CAGNNNCTG 1 cut(s) 444
Ama87I CYCGRG 1 cut(s) 483
AoxI GGCC 1 cut(s) 30
AseI ATTAAT 1 cut(s) 543
AspS9I GGNCC 1 cut(s) 30
AvaI CYCGRG 1 cut(s) 483
Bbv12I GWGCWC 1 cut(s) 249
BccI CCATC 2 cut(s) 15, 316
BceAI ACGGC 1 cut(s) 706
BcgI CGANNNNNNTGC 2 cut(s) 384, 418
BciVI GTATCC 1 cut(s) 108
BcoDI GTCTC 1 cut(s) 110
BfaI CTAG 3 cut(s) 330, 554, 710
BfuAI ACCTGC 1 cut(s) 513
BfuI GTATCC 1 cut(s) 108
BmeT110I CYCGRG 1 cut(s) 483
BmgT120I GGNCC 1 cut(s) 30
BmiI GGNNCC 1 cut(s) 503
BmsI GCATC 1 cut(s) 709
BoxI GACNNNNGTC 1 cut(s) 132
BpmI CTGGAG 1 cut(s) 338
BpuEI CTTGAG 1 cut(s) 596
BsaJI CCNNGG 1 cut(s) 145
BseDI CCNNGG 1 cut(s) 145
BseMII CTCAG 1 cut(s) 729
BseRI GAGGAG 1 cut(s) 128
BsgI GTGCAG 2 cut(s) 31, 537
BshFI GGCC 1 cut(s) 32
BsiHKAI GWGCWC 1 cut(s) 249
BsiHKCI CYCGRG 1 cut(s) 483
BsmAI GTCTC 1 cut(s) 110
BsmI GAATGC 1 cut(s) 84
BsnI GGCC 1 cut(s) 32
BsoBI CYCGRG 1 cut(s) 483
Bsp1286I GDGCHC 1 cut(s) 249
Bsp143I GATC 2 cut(s) 391, 655
BspACI CCGC 2 cut(s) 67, 675
BspANI GGCC 1 cut(s) 32
BspCNI CTCAG 1 cut(s) 728
BspLI GGNNCC 1 cut(s) 503
BspMI ACCTGC 1 cut(s) 513
BssECI CCNNGG 1 cut(s) 145
BssMI GATC 2 cut(s) 391, 655
BssT1I CCWWGG 1 cut(s) 145
Bst6I CTCTTC 1 cut(s) 281
BstAPI GCANNNNNTGC 2 cut(s) 54, 168
BstC8I GCNNGC 3 cut(s) 59, 169, 209
BstDEI CTNAG 3 cut(s) 252, 636, 715
BstKTI GATC 2 cut(s) 394, 658
BstMAI GTCTC 1 cut(s) 110
BstMBI GATC 2 cut(s) 391, 655
BstMWI GCNNNNNNNGC 5 cut(s) 54, 168, 217, 411, 477
BstNSI RCATGY 1 cut(s) 224
BstPAI GACNNNNGTC 1 cut(s) 132
BsuI GTATCC 1 cut(s) 108
BsuRI GGCC 1 cut(s) 32
BtsI GCAGTG 1 cut(s) 269
BtsIMutI CAGTG 2 cut(s) 17, 269
BveI ACCTGC 1 cut(s) 513
Cac8I GCNNGC 3 cut(s) 59, 169, 209
CaiI CAGNNNCTG 1 cut(s) 444
Cfr13I GGNCC 1 cut(s) 30
CseI GACGC 1 cut(s) 137
Csp6I GTAC 1 cut(s) 400
CviAII CATG 3 cut(s) 221, 566, 685
CviJI RGCY 9 cut(s) 32, 211, 316, 329, 358, 381, 444, 595, 693
CviKI_1 RGCY 9 cut(s) 32, 211, 316, 329, 358, 381, 444, 595, 693
CviQI GTAC 1 cut(s) 400
DdeI CTNAG 3 cut(s) 252, 636, 715
DpnI GATC 2 cut(s) 393, 657
DpnII GATC 2 cut(s) 391, 655
Eam1104I CTCTTC 1 cut(s) 281
EarI CTCTTC 1 cut(s) 281
Eco130I CCWWGG 1 cut(s) 145
Eco88I CYCGRG 1 cut(s) 483
EcoT14I CCWWGG 1 cut(s) 145
EcoT22I ATGCAT 1 cut(s) 724
ErhI CCWWGG 1 cut(s) 145
FaeI CATG 3 cut(s) 224, 569, 688
FalI AAGNNNNNCTT 2 cut(s) 258, 290
FatI CATG 3 cut(s) 220, 565, 684
FauI CCCGC 1 cut(s) 682
FauNDI CATATG 1 cut(s) 460
FspBI CTAG 3 cut(s) 330, 554, 710
GsuI CTGGAG 1 cut(s) 338
HaeIII GGCC 1 cut(s) 32
HgaI GACGC 1 cut(s) 137
Hin1II CATG 3 cut(s) 224, 569, 688
HincII GTYRAC 2 cut(s) 43, 630
HindII GTYRAC 2 cut(s) 43, 630
HindIII AAGCTT 1 cut(s) 209
HinfI GANTC 2 cut(s) 490, 713
HpaI GTTAAC 1 cut(s) 43
Hpy166II GTNNAC 4 cut(s) 43, 400, 630, 649
Hpy188I TCNGA 8 cut(s) 18, 90, 112, 355, 376, 387, 601, 718
Hpy188III TCNNGA 6 cut(s) 283, 483, 494, 554, 710, 730
Hpy8I GTNNAC 4 cut(s) 43, 400, 630, 649
HpyAV CCTTC 2 cut(s) 176, 606
HpyF10VI GCNNNNNNNGC 5 cut(s) 54, 168, 217, 411, 477
HpyF3I CTNAG 3 cut(s) 252, 636, 715
Hsp92II CATG 3 cut(s) 224, 569, 688
KspAI GTTAAC 1 cut(s) 43
Kzo9I GATC 2 cut(s) 391, 655
LmnI GCTCC 3 cut(s) 244, 355, 485
LpnPI CCDG 6 cut(s) 46, 116, 150, 302, 518, 743
LweI GCATC 1 cut(s) 709
MaeI CTAG 3 cut(s) 330, 554, 710
MalI GATC 2 cut(s) 393, 657
MboI GATC 2 cut(s) 391, 655
MboII GAAGA 2 cut(s) 248, 298
MfeI CAATTG 1 cut(s) 157
MhlI GDGCHC 1 cut(s) 249
MluCI AATT 4 cut(s) 52, 151, 157, 215
MlyI GAGTC 1 cut(s) 707
MmeI TCCRAC 1 cut(s) 354
MnlI CCTC 7 cut(s) 12, 106, 319, 327, 490, 514, 542
Mph1103I ATGCAT 1 cut(s) 724
MseI TTAA 4 cut(s) 42, 294, 543, 584
MslI CAYNNNNRTG 1 cut(s) 637
MunI CAATTG 1 cut(s) 157
Mva1269I GAATGC 1 cut(s) 84
MwoI GCNNNNNNNGC 5 cut(s) 54, 168, 217, 411, 477
NdeI CATATG 1 cut(s) 460
NdeII GATC 2 cut(s) 391, 655
NlaIII CATG 3 cut(s) 224, 569, 688
NlaIV GGNNCC 1 cut(s) 503
NsiI ATGCAT 1 cut(s) 724
NspI RCATGY 1 cut(s) 224
PctI GAATGC 1 cut(s) 84
PfeI GAWTC 1 cut(s) 490
PleI GAGTC 1 cut(s) 707
PpsI GAGTC 1 cut(s) 707
PshAI GACNNNNGTC 1 cut(s) 132
PshBI ATTAAT 1 cut(s) 543
PspN4I GGNNCC 1 cut(s) 503
PspPI GGNCC 1 cut(s) 30
PstNI CAGNNNCTG 1 cut(s) 444
RsaI GTAC 1 cut(s) 401
RsaNI GTAC 1 cut(s) 400
RseI CAYNNNNRTG 1 cut(s) 637
SaqAI TTAA 4 cut(s) 42, 294, 543, 584
Sau3AI GATC 2 cut(s) 391, 655
Sau96I GGNCC 1 cut(s) 30
SchI GAGTC 1 cut(s) 707
SduI GDGCHC 1 cut(s) 249
SfaNI GCATC 1 cut(s) 709
SmiMI CAYNNNNRTG 1 cut(s) 637
SmlI CTYRAG 1 cut(s) 611
SmoI CTYRAG 1 cut(s) 611
Sse9I AATT 4 cut(s) 52, 151, 157, 215
SsiI CCGC 2 cut(s) 67, 675
SspMI CTAG 3 cut(s) 330, 554, 710
StyI CCWWGG 1 cut(s) 145
TaqI TCGA 2 cut(s) 394, 547
TasI AATT 4 cut(s) 52, 151, 157, 215
TatI WGTACW 1 cut(s) 399
TfiI GAWTC 1 cut(s) 490
Tru1I TTAA 4 cut(s) 42, 294, 543, 584
Tru9I TTAA 4 cut(s) 42, 294, 543, 584
TscAI CASTG 2 cut(s) 17, 276
TspDTI ATGAA 3 cut(s) 249, 315, 447
TspRI CASTG 2 cut(s) 17, 276
VspI ATTAAT 1 cut(s) 543
XbaI TCTAGA 2 cut(s) 553, 709
XceI RCATGY 1 cut(s) 224
XspI CTAG 3 cut(s) 330, 554, 710
Zsp2I ATGCAT 1 cut(s) 724
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.