RLG00000002699

lysine-specific demethylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000280
Physical Location & Seq
Reverse (-)
38284626 .. 38294282
9657 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002699

Sequence Viewer

Length: 3036 bp
ATGGCGAGAGGGGGAGGCGGAGGAAGAGGGAGAGGGGCAAAGCGGCAAAGGGAACAAGGCCCAGATACCCATAACCCGATTCAAACTGAAGATGTTGCTGTCAAAGTTGGTGAAGATGGTGATGGGGTTGTTCTTTCTGAGATAAAGGCAGTGTCTTTTGGTGGTGTAGAGAAGGGTGAGGACAGTTTGGGAAACGATCAAAAGGAAGAAGTTGCTGTGAGTGTGAAGAAGAAGAAGAAGAAGAAGCCTGGGAGGAAGAGTAAGAAGGGTTTGGTGGGAAATGGTGATGGAGGTCTAAAGGAGGTTGCTTTTGGTGGTGATGAGATTTTTATGATGACTTTGAGGAAGAGGCCTGAACGGAACAAGAGAGTTAGAGCTATGGAGGCAGAGGGAAATGGTGAAGAGAATGGTGCTTCTGTGAACAAGAAAGGTAGGAAAAAGGTGACATTTGCGAAGAAAGAGGGAAAGAAAGGTGTTTTAGAAGTGAATAATGACAAGAAGCATGATAGGAAGCGTGCGAAAACTGAGGAGGAAGATGGGAATGAGGTAGGCTATTCGTTTAGGCCTCTGAGGGAGCAGGGACATCTATCAACGGAGGAGCGTAAAAAGTGGATTGAGGAGGTGTCCCTAATGTGCCATCAATGTCAGAGGAATGATAAGGGAAGGGTTGTTCGGTGCAAAAAATGTAGGACAAAGCGATATTGTGTTCCTTGCATAGAGAATTGGTATCCACATACATCAGAGGATGGCATTGCCGAAGCTTGTCCTGTATGCCGTGGAAATTGCAATTGCAAAGCATGCTTGCGCTTAGATATACCAGTTAAAAATCTGAAGAACCAAGATTTAGTACTTGACAAAGATGCAAGAGTTGAGCACTCTATGTACTTAATTCATGCACTGCTTCCATCCTTGAAAAGAATTCATGAAGAACAAGAGAATGAGATGGCGATGGAAGCAAGGAGAAAAGGATTATCTAACTTGAAGCTCCAGATACCAAAGTCTGACTGTGCTGCTGATGTTCGCGTGTATTGCAACAACTGCAGAACTTCTATTTTTGATTATCACAGAAGCTGTCCTAAATGTTCATATGACCTCTGCCTCATTTGTTGCCGGGAGATTCGAGAAGGACAATTGCAGCTAGGTAGGGAGGAAGTGACTTTGGAGTACGTTTCTCGGGGCCTACCTTATTTGCATGGTGGAGAGGAAGAGGACAACAAAAAAAGAAAGGGAAAGAGAAATAGGAATGTTGTGGAGCCACCCTCTGAAACTAGTCCCAAAAGTTGTGGAAAGCGAACATTTGAGTGGAAATCATATGAAGATGGAAGCATACTTTGCCCCCCAGAGGACATGGGAGGTTGTGGCAGTGGTAATCTAGAATTGAGATGCATGTTTTCCAAAAATTATGTCAAAGAGTTGGTAAAGAAAGCAGAAGAGATAGATGAAGCTTACAAACTTGTGTACTCAAGTAGAACTTCTGCAGAGAGGTGTTCATGTCTCAACTCTGTTGATGATGTCAATTCAAGCATCAATGCATCAAGGAAAGCAGCTTCTCGAGACAATTCTGAGGACAACTATCTGTACTGTGCAAGGGCTGGAGATATCCAAGTAGAGGATTTAAAGCATTTCCAGTGGCATTGGAGCAAGGGTGAGCCTGTTATCGTTAGCAATGCACTTGAAACTGCGTCAGGTTTAAGCTGGGAACCATTGGTCATGTGGCGCGCTTGTCGTCAGATGCAACATACTAAGCATGGTAAACATTTGGACGTCAAAGCAATAGATTGCCTGGATTGGTGTGAGGGGGATATCAATATCCACCAATTTTTTACTGGATACTCGAAGGGACGGTTTGACAAAGAGAATTGGCCACAGATATTGAAACTGAAAGATTGGCCGCCAACTAATTTATTTGAGGAGCGCCTTCCTCGTCATGGTGCTGAGTTCATTTGTTGTCTGCCATATAAGGAATATACTCATCCTCGCAATGGTCCTCTAAACCTTTTTGCCAAATTACCTTCAGAATGTGTAAAACCAGACATGGGACCAAAGACATATATTGCTTATGGTTTTTCCCAGGAGCTTGGACGTGGAGATTCTGTAACCAAGCTTCATTGCGATATGTCTGATGCGGTGAATGTTTTGACACATACCACTGAAGTGAACCTTACTCCTGAGCAACTTAGTGTCATTGAAAAGTTGAAAAAGAAGCATGCTCGACAAGACCAAAGAGAAATTTTTGGCAATTGTCAGACTGTGGATGATGATGTTGATAGTGGCAAGGCTGGTGGTGATTCTGGTTTCAGTGCTGCTGATGATAAACAACTTCATGTTGATAATAATAGCAGTGGTGTAGCTGTTCCAGAACTGGTTGATCCAATTGTTCAACATGTTGGAGATGCTTCAATGGGATCTGTGTCTGAAAAGATTAAAGAGGCAGAATTAGATCATGATATCGGTGATGAAATGCCTGCAAGAAATTATGGAATTAAGTTGGAAGAGTCCGATGTCAATGAGGGAGGTGCTGTATGGGACATATTCCGTAGACAGGATGTTCCTAAGCTGCAGGAGTATCTCATGAAGCATTTCAAGGAATTCAGGCACGTACACTGTTGTCCATTGCAGCAGGTTATTCATCCCATACATGATCAGACATTTTATCTTACAATGGAGCACAAAAAGAAGCTTAAAGAGGAATACGGAATTGAACCATGGACCTTCATTCAAAACCTTGGAGATGCTGTCTTTATTCCTGCAGGATGTCCGCATCAAGTCAGGAACTTGAAGTCATGCATCAAAGTTGCAATGGACTTTGTCTCACCTGAAAATGTCGGCGAGTGCTGTCACATGACAGAAGTATTCCGCACACTTCCAGAAAATCATAGGGCTAAAGAGGACAAATTGGAGGTAAAGAAAATGATTGTTCATTCTGTCACTGATGCTCTGGAGGAACTAAATCAGAATGTGAGGTCTAAGGAAGCCACTAATCCACCTCAATCAAGTCAGAGCGACGGAGATTATATGGTCCAGGATACTGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003824 GO:0005102 GO:0005488 GO:0005506 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006081 GO:0006325 GO:0006355 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0007154 GO:0007165 GO:0008134 GO:0008150 GO:0008152 GO:0008214 GO:0009058 GO:0009719 GO:0009725 GO:0009755 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0016043 GO:0016569 GO:0016570 GO:0016577 GO:0016999 GO:0017000 GO:0017144 GO:0019219 GO:0019222 GO:0019538 GO:0023052 GO:0030518 GO:0030521 GO:0030522 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031490 GO:0031974 GO:0031981 GO:0032451 GO:0032452 GO:0032454 GO:0032870 GO:0033169 GO:0033993 GO:0035257 GO:0035258 GO:0036211 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043401 GO:0043412 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0045893 GO:0045935 GO:0046184 GO:0046292 GO:0046293 GO:0046872 GO:0046914 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048545 GO:0050681 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0051427 GO:0051716 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070013 GO:0070076 GO:0070887 GO:0070988 GO:0071310 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0140096 GO:1901363 GO:1901564 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04714 map04714
Pfam Domains
Protein Families
JmjC zf-4CXXC_R1

Protein Analysis

1012

Amino Acids

114.27

Weight (kDa)

6.92

Isoelectric Point (pI)

44.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-4CXXC_R1 PF10497 209 - 269 1.8e-06 Zinc-finger domain of monoamine-oxidase A repressor R1
JmjC PF02373 837 - 936 3.5e-15 JmjC domain, hydroxylase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000280)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07610 AT3G07610 AT3G07610
fragaria_vesca FvH4_5g24540 FvH4_5g24540 FvH4_5g24540 FvH4_5g24540 FvH4_5g24640 FvH4_5g29990 FvH4_5g29990 FvH4_5g29990 FvH4_7g06860 FvH4_7g09570 FvH4_7g09571 FvH4_7g09571
malus_domestica MD05G1184100.v1.1 MD06G1012500.v1.1 MD07G1099600.v1.1 MD07G1099700.v1.1
prunus_persica Prupe.2G123400_v2.0.a1 Prupe.5G015100_v2.0.a1 Prupe.5G015100_v2.0.a1 Prupe.5G015100_v2.0.a1 Prupe.5G015100_v2.0.a1
pyrus_communis pycom06g01040 pycom10g12640
rosa_chinensis RchiOBHm_Chr1g0346431 RchiOBHm_Chr1g0346441 RchiOBHm_Chr3g0461961 RchiOBHm_Chr3g0461971 RchiOBHm_Chr3g0461991 RchiOBHm_Chr3g0462031 RchiOBHm_Chr3g0462041 RchiOBHm_Chr7g0215021 RchiOBHm_Chr7g0223871 RchiOBHm_Chr7g0223931 RchiOBHm_Chr7g0223991 RchiOBHm_Chr7g0224011 RchiOBHm_Chr7g0224041
rosa_laevigata RLG00000001919 RLG00000001920 RLG00000001924 RLG00000002699 RLG00000024884 RLG00000024888 RLG00000024889 RLG00000028799 RLG00000028800
rosa_multiflora Rmu_co8191480.1_g000001 Rmu_co8411417.1_g000001 Rmu_co8440445.1_g000001 Rmu_co8460737.1_g000001 Rmu_sc0003363.1_g000077 Rmu_sc0004308.1_g000026 Rmu_sc0004540.1_g000014 Rmu_sc0004540.1_g000026 Rmu_sc0007736.1_g000006 Rmu_sc0007736.1_g000008 Rmu_sc0007777.1_g000006 Rmu_sc0007777.1_g000009 Rmu_sc0007777.1_g000029 Rmu_sc0008432.1_g000002 Rmu_sc0008835.1_g000002 Rmu_sc0029902.1_g000002
rosa_roxburghii Rroxscaffold_3G00235160 Rroxscaffold_3G00235180 Rroxscaffold_3G00235210 Rroxscaffold_3G00244660 Rroxscaffold_4G00308520 Rroxscaffold_4G00308530 Rroxscaffold_6G00417830 Rroxscaffold_6G00417840
rosa_rugosa Rorug01G0179700 Rorug01G0179800 Rorug07G0149600 Rorug07G0221000 Rorug07G0221100 Rorug07G0221100
rosa_samantha Rh1AG199200 Rh1AG199300 Rh1AG199400 Rh1BG165100 Rh1BG165200 Rh1BG165300 Rh1BG165400 Rh1CG184300 Rh1CG184400 Rh1DG195800 Rh1DG195900 Rh1DG196000 Rh2BG420000 Rh3AG112800 Rh3BG115600 Rh3BG115700 Rh3BG115800 Rh3BG115900 Rh3CG117900 Rh3CG118300 Rh3CG118400 Rh3CG118500 Rh3DG117400 Rh3DG117500 Rh3DG117600 Rh6AG306600 Rh6BG312200 Rh7BG278000 Rh7BG355000 Rh7BG355400 Rh7BG355800 Rh7BG355900 Rh7BG356400 Rh7CG305900 Rh7CG382300 Rh7CG382800 Rh7CG383400 Rh7CG383500 Rh7DG290000 Rh7DG358300 Rh7DG358500 Rh7DG359600 Rh7DG359800
rosa_wichuraiana Rw0G007860 Rw1G016720 Rw1G016730 Rw7G024430 Rw7G030900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1767
Acc36I ACCTGC 1 cut(s) 2611
AccI GTMKAC 1 cut(s) 2539
AccII CGCG 2 cut(s) 1023, 1719
AciI CCGC 6 cut(s) 18, 43, 1892, 2126, 2759, 2857
AclWI GGATC 2 cut(s) 2363, 2413
AcoI YGGCCR 2 cut(s) 1862, 1889
AcsI RAATTY 3 cut(s) 918, 2229, 2588
AcuI CTGAAG 4 cut(s) 108, 851, 1998, 2172
AcyI GRCGYC 1 cut(s) 1764
AfaI GTAC 6 cut(s) 849, 884, 1166, 1460, 1580, 2601
AfiI CCNNNNNNNGG 6 cut(s) 1342, 1609, 1928, 1982, 2036, 2542
AflIII ACRYGT 1 cut(s) 2383
AhlI ACTAGT 1 cut(s) 1268
AjiI CACGTC 1 cut(s) 2084
AjnI CCWGG 4 cut(s) 247, 1782, 2070, 3021
AleI CACNNNNGTG 1 cut(s) 2153
AloI GAACNNNNNNTCC 2 cut(s) 654, 686
Alw21I GWGCWC 2 cut(s) 876, 2670
Alw26I GTCTC 3 cut(s) 1499, 1548, 2815
AlwI GGATC 2 cut(s) 2363, 2413
AlwNI CAGNNNCTG 1 cut(s) 1071
Ama87I CYCGRG 2 cut(s) 1173, 1551
AoxI GGCC 6 cut(s) 58, 350, 563, 1177, 1862, 1889
ApeKI GCWGC 6 cut(s) 1010, 1135, 1544, 2303, 2557, 2617
ApoI RAATTY 3 cut(s) 918, 2229, 2588
ArsI GACNNNNNNTTYG 2 cut(s) 1389, 1421
Asp700I GAANNNNTTC 1 cut(s) 2579
AspLEI GCGC 4 cut(s) 807, 1719, 1721, 1917
AspS9I GGNCC 6 cut(s) 59, 1177, 1985, 2039, 2709, 3019
AsuC2I CCSGG 1 cut(s) 1112
AvaI CYCGRG 2 cut(s) 1173, 1551
AvaII GGWCC 4 cut(s) 1985, 2039, 2709, 3019
BaeI ACNNNNGTAYC 2 cut(s) 983, 1016
BalI TGGCCA 1 cut(s) 1864
BarI GAAGNNNNNNTAC 2 cut(s) 2088, 2120
Bbv12I GWGCWC 2 cut(s) 876, 2670
BbvI GCAGC 6 cut(s) 997, 1147, 1556, 2290, 2544, 2629
BceAI ACGGC 1 cut(s) 759
BciT130I CCWGG 4 cut(s) 249, 1784, 2072, 3023
BciVI GTATCC 3 cut(s) 738, 1823, 3019
BclI TGATCA 1 cut(s) 2641
BcnI CCSGG 1 cut(s) 1112
BcoDI GTCTC 3 cut(s) 1499, 1548, 2815
BcuI ACTAGT 1 cut(s) 1268
BfaI CTAG 3 cut(s) 1139, 1269, 1373
BfmI CTRYAG 4 cut(s) 1039, 1476, 2558, 2748
BfoI RGCGCY 1 cut(s) 1918
BfuAI ACCTGC 1 cut(s) 2611
BfuI GTATCC 3 cut(s) 738, 1823, 3019
BisI GCNGC 8 cut(s) 44, 1011, 1136, 1545, 1892, 2304, 2558, 2618
BlsI GCNGC 8 cut(s) 45, 1012, 1137, 1546, 1893, 2305, 2559, 2619
BmcAI AGTACT 1 cut(s) 849
Bme1390I CCNGG 5 cut(s) 249, 1112, 1784, 2072, 3023
Bme18I GGWCC 4 cut(s) 1985, 2039, 2709, 3019
BmeT110I CYCGRG 2 cut(s) 1173, 1551
BmgBI CACGTC 1 cut(s) 2084
BmgT120I GGNCC 6 cut(s) 59, 1177, 1985, 2039, 2709, 3019
BmiI GGNNCC 4 cut(s) 1178, 1254, 1701, 2040
BmrFI CCNGG 5 cut(s) 249, 1112, 1784, 2072, 3023
BplI GAGNNNNNCTC 2 cut(s) 1244, 1276
BpmI CTGGAG 3 cut(s) 971, 1614, 2960
Bpu10I CCTNAGC 2 cut(s) 2169, 2553
BpuEI CTTGAG 1 cut(s) 1447
BpuMI CCSGG 1 cut(s) 1112
BsaAI YACGTR 1 cut(s) 2599
BsaHI GRCGYC 1 cut(s) 1764
BsaJI CCNNGG 5 cut(s) 248, 775, 2070, 2705, 2725
Bsc4I CCNNNNNNNGG 6 cut(s) 1342, 1609, 1928, 1982, 2036, 2542
Bse1I ACTGG 4 cut(s) 818, 1627, 1831, 2367
Bse3DI GCAATG 6 cut(s) 750, 1672, 1987, 2107, 2612, 2805
BseBI CCWGG 4 cut(s) 249, 1784, 2072, 3023
BseDI CCNNGG 5 cut(s) 248, 775, 2070, 2705, 2725
BseGI GGATG 7 cut(s) 751, 905, 1972, 2260, 2551, 2629, 2759
BseLI CCNNNNNNNGG 6 cut(s) 1342, 1609, 1928, 1982, 2036, 2542
BseMI GCAATG 6 cut(s) 750, 1672, 1987, 2107, 2612, 2805
BseMII CTCAG 6 cut(s) 129, 516, 560, 1554, 1926, 2160
BseNI ACTGG 4 cut(s) 818, 1627, 1831, 2367
BsePI GCGCGC 1 cut(s) 1717
BseRI GAGGAG 4 cut(s) 542, 611, 632, 1925
BseXI GCAGC 6 cut(s) 997, 1147, 1556, 2290, 2544, 2629
BseYI CCCAGC 1 cut(s) 1695
Bsh1236I CGCG 2 cut(s) 1023, 1719
BshFI GGCC 6 cut(s) 60, 352, 565, 1179, 1864, 1891
BsiHKAI GWGCWC 2 cut(s) 876, 2670
BsiHKCI CYCGRG 2 cut(s) 1173, 1551
BsiSI CCGG 1 cut(s) 1111
BslFI GGGAC 6 cut(s) 594, 610, 1257, 1854, 2052, 2540
BslI CCNNNNNNNGG 6 cut(s) 1342, 1609, 1928, 1982, 2036, 2542
BsmAI GTCTC 3 cut(s) 1499, 1548, 2815
BsmFI GGGAC 6 cut(s) 594, 610, 1257, 1854, 2052, 2540
BsnI GGCC 6 cut(s) 60, 352, 565, 1179, 1864, 1891
BsoBI CYCGRG 2 cut(s) 1173, 1551
Bsp1286I GDGCHC 2 cut(s) 876, 2670
Bsp143I GATC 5 cut(s) 196, 2368, 2405, 2440, 2641
Bsp19I CCATGG 1 cut(s) 2705
BspACI CCGC 6 cut(s) 18, 43, 1892, 2126, 2759, 2857
BspANI GGCC 6 cut(s) 60, 352, 565, 1179, 1864, 1891
BspCNI CTCAG 6 cut(s) 130, 517, 561, 1555, 1927, 2161
BspFNI CGCG 2 cut(s) 1023, 1719
BspHI TCATGA 3 cut(s) 922, 2443, 2571
BspLI GGNNCC 4 cut(s) 1178, 1254, 1701, 2040
BspMAI CTGCAG 4 cut(s) 1043, 1480, 2562, 2752
BspMI ACCTGC 1 cut(s) 2611
BspPI GGATC 2 cut(s) 2363, 2413
BsrDI GCAATG 6 cut(s) 750, 1672, 1987, 2107, 2612, 2805
BsrI ACTGG 4 cut(s) 818, 1627, 1831, 2367
BssECI CCNNGG 5 cut(s) 248, 775, 2070, 2705, 2725
BssHII GCGCGC 1 cut(s) 1717
BssMI GATC 5 cut(s) 196, 2368, 2405, 2440, 2641
BssNI GRCGYC 1 cut(s) 1764
BssT1I CCWWGG 2 cut(s) 2705, 2725
Bst2UI CCWGG 4 cut(s) 249, 1784, 2072, 3023
Bst4CI ACNGT 6 cut(s) 185, 1007, 1583, 1845, 2251, 2606
Bst6I CTCTTC 7 cut(s) 19, 251, 341, 396, 1200, 1425, 2487
BstACI GRCGYC 1 cut(s) 1764
BstAPI GCANNNNNTGC 3 cut(s) 798, 1038, 1332
BstBAI YACGTR 1 cut(s) 2599
BstC8I GCNNGC 6 cut(s) 516, 799, 803, 1719, 2208, 2466
BstDSI CCRYGG 2 cut(s) 775, 2705
BstF5I GGATG 7 cut(s) 751, 905, 1972, 2260, 2551, 2629, 2759
BstFNI CGCG 2 cut(s) 1023, 1719
BstH2I RGCGCY 1 cut(s) 1918
BstHHI GCGC 4 cut(s) 807, 1719, 1721, 1917
BstKTI GATC 5 cut(s) 199, 2371, 2408, 2443, 2644
BstMAI GTCTC 3 cut(s) 1499, 1548, 2815
BstMBI GATC 5 cut(s) 196, 2368, 2405, 2440, 2641
BstMWI GCNNNNNNNGC 6 cut(s) 383, 798, 953, 1029, 1038, 1332
BstNI CCWGG 4 cut(s) 249, 1784, 2072, 3023
BstNSI RCATGY 4 cut(s) 801, 1390, 2210, 2387
BstSCI CCNGG 5 cut(s) 247, 1110, 1782, 2070, 3021
BstSFI CTRYAG 4 cut(s) 1039, 1476, 2558, 2748
BstUI CGCG 2 cut(s) 1023, 1719
BstV1I GCAGC 6 cut(s) 997, 1147, 1556, 2290, 2544, 2629
BstX2I RGATCY 1 cut(s) 2405
BstXI CCANNNNNNTGG 1 cut(s) 2078
BstYI RGATCY 1 cut(s) 2405
BsuI GTATCC 3 cut(s) 738, 1823, 3019
BsuRI GGCC 6 cut(s) 60, 352, 565, 1179, 1864, 1891
BtgI CCRYGG 2 cut(s) 775, 2705
BtgZI GCGATG 1 cut(s) 962
BtrI CACGTC 1 cut(s) 2084
BtsCI GGATG 7 cut(s) 751, 905, 1972, 2260, 2551, 2629, 2759
BtsI GCAGTG 4 cut(s) 156, 896, 1369, 2347
BtsIMutI CAGTG 9 cut(s) 156, 896, 1369, 1634, 2148, 2305, 2347, 2602, 2928
BveI ACCTGC 1 cut(s) 2611
Cac8I GCNNGC 6 cut(s) 516, 799, 803, 1719, 2208, 2466
CaiI CAGNNNCTG 1 cut(s) 1071
CciI TCATGA 3 cut(s) 922, 2443, 2571
CfoI GCGC 4 cut(s) 807, 1719, 1721, 1917
Cfr13I GGNCC 6 cut(s) 59, 1177, 1985, 2039, 2709, 3019
CseI GACGC 1 cut(s) 1671
Csp6I GTAC 6 cut(s) 848, 883, 1165, 1459, 1579, 2600
CspCI CAANNNNNGTGG 6 cut(s) 1264, 1299, 1854, 1889, 2263, 2298
CviQI GTAC 6 cut(s) 848, 883, 1165, 1459, 1579, 2600
DpnI GATC 5 cut(s) 198, 2370, 2407, 2442, 2643
DpnII GATC 5 cut(s) 196, 2368, 2405, 2440, 2641
DraI TTTAAA 1 cut(s) 1617
EaeI YGGCCR 2 cut(s) 1862, 1889
Eam1104I CTCTTC 7 cut(s) 19, 251, 341, 396, 1200, 1425, 2487
EarI CTCTTC 7 cut(s) 19, 251, 341, 396, 1200, 1425, 2487
EciI GGCGGA 1 cut(s) 33
Eco130I CCWWGG 2 cut(s) 2705, 2725
Eco147I AGGCCT 2 cut(s) 352, 565
Eco32I GATATC 3 cut(s) 1600, 1804, 2449
Eco47I GGWCC 4 cut(s) 1985, 2039, 2709, 3019
Eco57I CTGAAG 4 cut(s) 108, 851, 1998, 2172
Eco88I CYCGRG 2 cut(s) 1173, 1551
EcoO109I RGGNCCY 1 cut(s) 1177
EcoRI GAATTC 2 cut(s) 918, 2588
EcoRII CCWGG 4 cut(s) 247, 1782, 2070, 3021
EcoRV GATATC 3 cut(s) 1600, 1804, 2449
EcoT14I CCWWGG 2 cut(s) 2705, 2725
EcoT22I ATGCAT 3 cut(s) 1388, 1534, 2789
ErhI CCWWGG 2 cut(s) 2705, 2725
FalI AAGNNNNNCTT 4 cut(s) 1456, 1488, 2145, 2177
FaqI GGGAC 6 cut(s) 594, 610, 1257, 1854, 2052, 2540
FauNDI CATATG 2 cut(s) 1087, 1312
FbaI TGATCA 1 cut(s) 2641
FblI GTMKAC 1 cut(s) 2539
Fnu4HI GCNGC 8 cut(s) 44, 1011, 1136, 1545, 1892, 2304, 2558, 2618
FokI GGATG 7 cut(s) 758, 892, 1959, 2267, 2558, 2616, 2766
Fsp4HI GCNGC 8 cut(s) 44, 1011, 1136, 1545, 1892, 2304, 2558, 2618
FspBI CTAG 3 cut(s) 1139, 1269, 1373
GlaI GCGC 4 cut(s) 806, 1718, 1720, 1916
GluI GCNGC 8 cut(s) 44, 1011, 1136, 1545, 1892, 2304, 2558, 2618
GsaI CCCAGC 1 cut(s) 1699
GsuI CTGGAG 3 cut(s) 971, 1614, 2960
HaeII RGCGCY 1 cut(s) 1918
HaeIII GGCC 6 cut(s) 60, 352, 565, 1179, 1864, 1891
HapII CCGG 1 cut(s) 1111
HgaI GACGC 1 cut(s) 1671
HhaI GCGC 4 cut(s) 807, 1719, 1721, 1917
Hin1I GRCGYC 1 cut(s) 1764
Hin6I GCGC 4 cut(s) 805, 1717, 1719, 1915
HinP1I GCGC 4 cut(s) 805, 1717, 1719, 1915
HindIII AAGCTT 4 cut(s) 759, 1443, 2102, 2678
HinfI GANTC 5 cut(s) 79, 1117, 2090, 2288, 2495
HpaII CCGG 1 cut(s) 1111
Hpy166II GTNNAC 6 cut(s) 421, 1459, 1754, 2158, 2540, 2602
Hpy8I GTNNAC 6 cut(s) 421, 1459, 1754, 2158, 2540, 2602
Hpy99I CGWCG 1 cut(s) 3008
HpyAV CCTTC 8 cut(s) 166, 259, 657, 1118, 1831, 1928, 2022, 2722
HpyCH4III ACNGT 6 cut(s) 185, 1007, 1583, 1845, 2251, 2606
HpyCH4IV ACGT 4 cut(s) 1167, 1764, 2083, 2598
HpyF10VI GCNNNNNNNGC 6 cut(s) 383, 798, 953, 1029, 1038, 1332
HpySE526I ACGT 4 cut(s) 1167, 1764, 2083, 2598
Hsp92I GRCGYC 1 cut(s) 1764
HspAI GCGC 4 cut(s) 805, 1717, 1719, 1915
Ksp22I TGATCA 1 cut(s) 2641
Kzo9I GATC 5 cut(s) 196, 2368, 2405, 2440, 2641
LmnI GCTCC 8 cut(s) 574, 598, 990, 1252, 1638, 1912, 2074, 2665
Lsp1109I GCAGC 6 cut(s) 997, 1147, 1556, 2290, 2544, 2629
MaeI CTAG 3 cut(s) 1139, 1269, 1373
MaeII ACGT 4 cut(s) 1167, 1764, 2083, 2598
MaeIII GTNAC 5 cut(s) 442, 1153, 2095, 2837, 2926
MalI GATC 5 cut(s) 198, 2370, 2407, 2442, 2643
MboI GATC 5 cut(s) 196, 2368, 2405, 2440, 2641
MfeI CAATTG 4 cut(s) 787, 1130, 2239, 2373
MflI RGATCY 1 cut(s) 2405
MhlI GDGCHC 2 cut(s) 876, 2670
MlsI TGGCCA 1 cut(s) 1864
MluNI TGGCCA 1 cut(s) 1864
MlyI GAGTC 1 cut(s) 2504
MmeI TCCRAC 2 cut(s) 2368, 2469
Mox20I TGGCCA 1 cut(s) 1864
Mph1103I ATGCAT 3 cut(s) 1388, 1534, 2789
MroXI GAANNNNTTC 1 cut(s) 2579
MscI TGGCCA 1 cut(s) 1864
MseI TTAA 7 cut(s) 822, 887, 1616, 1691, 2424, 2484, 2682
MslI CAYNNNNRTG 2 cut(s) 1300, 2153
Msp20I TGGCCA 1 cut(s) 1864
MspI CCGG 1 cut(s) 1111
MspR9I CCNGG 5 cut(s) 249, 1112, 1784, 2072, 3023
MunI CAATTG 4 cut(s) 787, 1130, 2239, 2373
MvaI CCWGG 4 cut(s) 249, 1784, 2072, 3023
MvnI CGCG 2 cut(s) 1023, 1719
MwoI GCNNNNNNNGC 6 cut(s) 383, 798, 953, 1029, 1038, 1332
NciI CCSGG 1 cut(s) 1112
NcoI CCATGG 1 cut(s) 2705
NdeI CATATG 2 cut(s) 1087, 1312
NdeII GATC 5 cut(s) 196, 2368, 2405, 2440, 2641
NlaIV GGNNCC 4 cut(s) 1178, 1254, 1701, 2040
NmuCI GTSAC 4 cut(s) 442, 1153, 2837, 2926
NsiI ATGCAT 3 cut(s) 1388, 1534, 2789
NspI RCATGY 4 cut(s) 801, 1390, 2210, 2387
OliI CACNNNNGTG 1 cut(s) 2153
PaeI GCATGC 2 cut(s) 801, 2210
PaeR7I CTCGAG 1 cut(s) 1551
PagI TCATGA 3 cut(s) 922, 2443, 2571
PauI GCGCGC 1 cut(s) 1717
PceI AGGCCT 2 cut(s) 352, 565
PciI ACATGT 1 cut(s) 2383
PdmI GAANNNNTTC 1 cut(s) 2579
PfeI GAWTC 4 cut(s) 79, 1117, 2090, 2288
PflFI GACNNNGTC 1 cut(s) 2807
PfoI TCCNGGA 1 cut(s) 3021
PkrI GCNGC 8 cut(s) 45, 1012, 1137, 1546, 1893, 2305, 2559, 2619
PleI GAGTC 1 cut(s) 2503
PpsI GAGTC 1 cut(s) 2503
Ppu21I YACGTR 1 cut(s) 2599
PscI ACATGT 1 cut(s) 2383
Psp6I CCWGG 4 cut(s) 247, 1782, 2070, 3021
PspFI CCCAGC 1 cut(s) 1695
PspGI CCWGG 4 cut(s) 247, 1782, 2070, 3021
PspN4I GGNNCC 4 cut(s) 1178, 1254, 1701, 2040
PspPI GGNCC 6 cut(s) 59, 1177, 1985, 2039, 2709, 3019
PstI CTGCAG 4 cut(s) 1043, 1480, 2562, 2752
PstNI CAGNNNCTG 1 cut(s) 1071
PsuI RGATCY 1 cut(s) 2405
PsyI GACNNNGTC 1 cut(s) 2807
PteI GCGCGC 1 cut(s) 1717
RsaI GTAC 6 cut(s) 849, 884, 1166, 1460, 1580, 2601
RsaNI GTAC 6 cut(s) 848, 883, 1165, 1459, 1579, 2600
RseI CAYNNNNRTG 2 cut(s) 1300, 2153
SaqAI TTAA 7 cut(s) 822, 887, 1616, 1691, 2424, 2484, 2682
SatI GCNGC 8 cut(s) 44, 1011, 1136, 1545, 1892, 2304, 2558, 2618
Sau3AI GATC 5 cut(s) 196, 2368, 2405, 2440, 2641
Sau96I GGNCC 6 cut(s) 59, 1177, 1985, 2039, 2709, 3019
SbfI CCTGCAGG 1 cut(s) 2752
ScaI AGTACT 1 cut(s) 849
SchI GAGTC 1 cut(s) 2504
ScrFI CCNGG 5 cut(s) 249, 1112, 1784, 2072, 3023
SdaI CCTGCAGG 1 cut(s) 2752
SduI GDGCHC 2 cut(s) 876, 2670
SfcI CTRYAG 4 cut(s) 1039, 1476, 2558, 2748
Sfr274I CTCGAG 1 cut(s) 1551
SinI GGWCC 4 cut(s) 1985, 2039, 2709, 3019
SlaI CTCGAG 1 cut(s) 1551
SmiMI CAYNNNNRTG 2 cut(s) 1300, 2153
SmlI CTYRAG 2 cut(s) 1462, 1551
SmoI CTYRAG 2 cut(s) 1462, 1551
SpeI ACTAGT 1 cut(s) 1268
SphI GCATGC 2 cut(s) 801, 2210
Sse8387I CCTGCAGG 1 cut(s) 2752
SseBI AGGCCT 2 cut(s) 352, 565
SsiI CCGC 6 cut(s) 18, 43, 1892, 2126, 2759, 2857
SspMI CTAG 3 cut(s) 1139, 1269, 1373
StuI AGGCCT 2 cut(s) 352, 565
StyD4I CCNGG 5 cut(s) 247, 1110, 1782, 2070, 3021
StyI CCWWGG 2 cut(s) 2705, 2725
TaaI ACNGT 6 cut(s) 185, 1007, 1583, 1845, 2251, 2606
TaiI ACGT 4 cut(s) 1170, 1767, 2086, 2601
TaqI TCGA 4 cut(s) 1120, 1552, 1835, 2212
TatI WGTACW 4 cut(s) 847, 882, 1458, 1578
TauI GCSGC 2 cut(s) 46, 1894
TfiI GAWTC 4 cut(s) 79, 1117, 2090, 2288
Tru1I TTAA 7 cut(s) 822, 887, 1616, 1691, 2424, 2484, 2682
Tru9I TTAA 7 cut(s) 822, 887, 1616, 1691, 2424, 2484, 2682
TscAI CASTG 9 cut(s) 156, 903, 1369, 1634, 2155, 2305, 2347, 2609, 2935
TseFI GTSAC 4 cut(s) 442, 1153, 2837, 2926
TseI GCWGC 6 cut(s) 1010, 1135, 1544, 2303, 2557, 2617
Tsp45I GTSAC 4 cut(s) 442, 1153, 2837, 2926
TspGWI ACGGA 5 cut(s) 373, 608, 2525, 2709, 3021
TspRI CASTG 9 cut(s) 156, 903, 1369, 1634, 2155, 2305, 2347, 2609, 2935
Tth111I GACNNNGTC 1 cut(s) 2807
VpaK11BI GGWCC 4 cut(s) 1985, 2039, 2709, 3019
XapI RAATTY 3 cut(s) 918, 2229, 2588
XbaI TCTAGA 1 cut(s) 1372
XceI RCATGY 4 cut(s) 801, 1390, 2210, 2387
XcmI CCANNNNNNNNNTGG 2 cut(s) 1710, 1823
XhoI CTCGAG 1 cut(s) 1551
XmiI GTMKAC 1 cut(s) 2539
XmnI GAANNNNTTC 1 cut(s) 2579
XspI CTAG 3 cut(s) 1139, 1269, 1373
ZraI GACGTC 1 cut(s) 1765
ZrmI AGTACT 1 cut(s) 849
Zsp2I ATGCAT 3 cut(s) 1388, 1534, 2789
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.