Rh3BG115700

lysine-specific demethylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0000280
Physical Location & Seq
Forward (+)
9529319 .. 9530450
1132 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG115700.1

Sequence Viewer

Length: 909 bp
ATGTATTTGGTGAATCGGTTGCTTCCTTATTTTAAGAGGATTAATGATGAACAGGTGAGTGAGATGAAGTTTGAGGCTGAGAAGCAAGGGTTGGTGGAGTTTGAGAAGATGGAAATTGAAAAGTCTAATTGCCTTGTTGGTGAGAGGATGTATTGCAACAACTGCAAGACTTTGATTTTCGACTTTCATAGAAGCTGTCCTGGATGCCAATATGATATGTGTCTTAAGTGTTTCCGGGAGATTCAGGGTGGAGCGTTGAAGGGAGGTGGGGAGGAAATGGTTGAGAAATATGGAAATCGGGGATTTGAGTGTTTTGATGGTGAGGGAAAGATTGTTCAGAGGAATGGTGTGGGAACTAGGAGGCTGAGGTCTTCTTCTGCAAAGTCAAAGTTTGAATGGAAAGCAGATAAAGATGGAAGCATTCGTTGCCCCCCAGAGCACATGGAAGGTTGCGAAAAGCAGCTTGTAGAGGTGCTCCGAAGGGGTGGTCCAAGGGCTGAAAGCATTCAACCCGAGGATTTTGAGCATTTTCAGAGGGATTGGATGAGGTGTGAGCCTGTTATTGAACTTGGACGCGGAGATTCTGTGACAAAGCTTCACTGTGATATGTCTGATGCAGTTAACATTCTGACCCATGCTACTGAAGTGACCCTTGAACCTAAACATCTTGCTGCTATAGAAGAGTTGAGAGAAAGCACAGGGAACAAGACCCAAAAAGAGATTTTCGGAAAATTTGGTCAAAGGAGACTCACTTGCATGGAAGAAGTTGATGATGCAGGTGAAGGAGGTGCTCTATGGGACATTTTCCAGGTACAGGATGTTCCAAAGCTGGACCAATACATAAAGAAGCATTGTAGGCCATTGAAATTGGTGTTGTTCATCCGATACATGATCAGACTATTTATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003824 GO:0005102 GO:0005488 GO:0005506 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006081 GO:0006325 GO:0006355 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0007154 GO:0007165 GO:0008134 GO:0008150 GO:0008152 GO:0008214 GO:0009058 GO:0009719 GO:0009725 GO:0009755 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0016043 GO:0016569 GO:0016570 GO:0016577 GO:0016999 GO:0017000 GO:0017144 GO:0019219 GO:0019222 GO:0019538 GO:0023052 GO:0030518 GO:0030521 GO:0030522 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031490 GO:0031974 GO:0031981 GO:0032451 GO:0032452 GO:0032454 GO:0032870 GO:0033169 GO:0033993 GO:0035257 GO:0035258 GO:0036211 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043401 GO:0043412 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0045893 GO:0045935 GO:0046184 GO:0046292 GO:0046293 GO:0046872 GO:0046914 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048545 GO:0050681 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0051427 GO:0051716 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070013 GO:0070076 GO:0070887 GO:0070988 GO:0071310 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0140096 GO:1901363 GO:1901564 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04714 map04714
Pfam Domains
Protein Families
JmjC zf-4CXXC_R1

Protein Analysis

302

Amino Acids

34.92

Weight (kDa)

6.23

Isoelectric Point (pI)

51.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000280)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07610 AT3G07610 AT3G07610
fragaria_vesca FvH4_5g24540 FvH4_5g24540 FvH4_5g24540 FvH4_5g24540 FvH4_5g24640 FvH4_5g29990 FvH4_5g29990 FvH4_5g29990 FvH4_7g06860 FvH4_7g09570 FvH4_7g09571 FvH4_7g09571
malus_domestica MD05G1184100.v1.1 MD06G1012500.v1.1 MD07G1099600.v1.1 MD07G1099700.v1.1
prunus_persica Prupe.2G123400_v2.0.a1 Prupe.5G015100_v2.0.a1 Prupe.5G015100_v2.0.a1 Prupe.5G015100_v2.0.a1 Prupe.5G015100_v2.0.a1
pyrus_communis pycom06g01040 pycom10g12640
rosa_chinensis RchiOBHm_Chr1g0346431 RchiOBHm_Chr1g0346441 RchiOBHm_Chr3g0461961 RchiOBHm_Chr3g0461971 RchiOBHm_Chr3g0461991 RchiOBHm_Chr3g0462031 RchiOBHm_Chr3g0462041 RchiOBHm_Chr7g0215021 RchiOBHm_Chr7g0223871 RchiOBHm_Chr7g0223931 RchiOBHm_Chr7g0223991 RchiOBHm_Chr7g0224011 RchiOBHm_Chr7g0224041
rosa_laevigata RLG00000001919 RLG00000001920 RLG00000001924 RLG00000002699 RLG00000024884 RLG00000024888 RLG00000024889 RLG00000028799 RLG00000028800
rosa_multiflora Rmu_co8191480.1_g000001 Rmu_co8411417.1_g000001 Rmu_co8440445.1_g000001 Rmu_co8460737.1_g000001 Rmu_sc0003363.1_g000077 Rmu_sc0004308.1_g000026 Rmu_sc0004540.1_g000014 Rmu_sc0004540.1_g000026 Rmu_sc0007736.1_g000006 Rmu_sc0007736.1_g000008 Rmu_sc0007777.1_g000006 Rmu_sc0007777.1_g000009 Rmu_sc0007777.1_g000029 Rmu_sc0008432.1_g000002 Rmu_sc0008835.1_g000002 Rmu_sc0029902.1_g000002
rosa_roxburghii Rroxscaffold_3G00235160 Rroxscaffold_3G00235180 Rroxscaffold_3G00235210 Rroxscaffold_3G00244660 Rroxscaffold_4G00308520 Rroxscaffold_4G00308530 Rroxscaffold_6G00417830 Rroxscaffold_6G00417840
rosa_rugosa Rorug01G0179700 Rorug01G0179800 Rorug07G0149600 Rorug07G0221000 Rorug07G0221100 Rorug07G0221100
rosa_samantha Rh1AG199200 Rh1AG199300 Rh1AG199400 Rh1BG165100 Rh1BG165200 Rh1BG165300 Rh1BG165400 Rh1CG184300 Rh1CG184400 Rh1DG195800 Rh1DG195900 Rh1DG196000 Rh2BG420000 Rh3AG112800 Rh3BG115600 Rh3BG115700 Rh3BG115800 Rh3BG115900 Rh3CG117900 Rh3CG118300 Rh3CG118400 Rh3CG118500 Rh3DG117400 Rh3DG117500 Rh3DG117600 Rh6AG306600 Rh6BG312200 Rh7BG278000 Rh7BG355000 Rh7BG355400 Rh7BG355800 Rh7BG355900 Rh7BG356400 Rh7CG305900 Rh7CG382300 Rh7CG382800 Rh7CG383400 Rh7CG383500 Rh7DG290000 Rh7DG358300 Rh7DG358500 Rh7DG359600 Rh7DG359800
rosa_wichuraiana Rw0G007860 Rw1G016720 Rw1G016730 Rw7G024430 Rw7G030900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 767
Acc36I ACCTGC 1 cut(s) 767
AccII CGCG 1 cut(s) 576
AciI CCGC 1 cut(s) 576
AcsI RAATTY 1 cut(s) 731
AcuI CTGAAG 1 cut(s) 663
AfaI GTAC 1 cut(s) 813
AfiI CCNNNNNNNGG 1 cut(s) 814
AflII CTTAAG 1 cut(s) 224
AgsI TTSAA 7 cut(s) 119, 259, 395, 509, 566, 656, 865
AjnI CCWGG 2 cut(s) 199, 807
AjuI GAANNNNNNNTTGG 2 cut(s) 74, 106
AloI GAACNNNNNNTCC 2 cut(s) 318, 350
AluBI AGCT 4 cut(s) 195, 463, 595, 829
AluI AGCT 4 cut(s) 195, 463, 595, 829
Alw21I GWGCWC 3 cut(s) 441, 477, 793
Alw26I GTCTC 1 cut(s) 739
Ama87I CYCGRG 1 cut(s) 512
AoxI GGCC 1 cut(s) 857
ApeKI GCWGC 2 cut(s) 460, 671
ApoI RAATTY 1 cut(s) 731
ArsI GACNNNNNNTTYG 2 cut(s) 472, 504
AseI ATTAAT 1 cut(s) 42
Asp700I GAANNNNTTC 1 cut(s) 504
AspS9I GGNCC 2 cut(s) 488, 832
AsuC2I CCSGG 1 cut(s) 236
AsuHPI GGTGA 5 cut(s) 22, 67, 152, 332, 791
AvaI CYCGRG 1 cut(s) 512
AvaII GGWCC 2 cut(s) 488, 832
BbsI GAAGAC 1 cut(s) 363
Bbv12I GWGCWC 3 cut(s) 441, 477, 793
BbvCI CCTCAGC 1 cut(s) 365
BbvI GCAGC 2 cut(s) 472, 658
BccI CCATC 3 cut(s) 103, 311, 407
BciT130I CCWGG 2 cut(s) 201, 809
BclI TGATCA 1 cut(s) 891
BcnI CCSGG 1 cut(s) 236
BcoDI GTCTC 1 cut(s) 739
BfaI CTAG 1 cut(s) 357
BfmI CTRYAG 1 cut(s) 675
BfrI CTTAAG 1 cut(s) 224
BfuAI ACCTGC 1 cut(s) 767
BisI GCNGC 2 cut(s) 461, 672
BlsI GCNGC 2 cut(s) 462, 673
Bme1390I CCNGG 3 cut(s) 201, 236, 809
Bme18I GGWCC 2 cut(s) 488, 832
BmeT110I CYCGRG 1 cut(s) 512
BmgT120I GGNCC 2 cut(s) 488, 832
BmrFI CCNGG 3 cut(s) 201, 236, 809
BmsI GCATC 3 cut(s) 194, 604, 763
BpiI GAAGAC 1 cut(s) 363
Bpu10I CCTNAGC 1 cut(s) 365
BpuMI CCSGG 1 cut(s) 236
BsaJI CCNNGG 2 cut(s) 491, 513
BsaXI ACNNNNNCTCC 2 cut(s) 570, 600
Bsc4I CCNNNNNNNGG 1 cut(s) 814
BseBI CCWGG 2 cut(s) 201, 809
BseDI CCNNGG 2 cut(s) 491, 513
BseGI GGATG 5 cut(s) 153, 209, 549, 823, 879
BseLI CCNNNNNNNGG 1 cut(s) 814
BseMII CTCAG 2 cut(s) 69, 356
BseXI GCAGC 2 cut(s) 472, 658
Bsh1236I CGCG 1 cut(s) 576
BshFI GGCC 1 cut(s) 859
BsiHKAI GWGCWC 3 cut(s) 441, 477, 793
BsiHKCI CYCGRG 1 cut(s) 512
BsiSI CCGG 1 cut(s) 235
BslFI GGGAC 1 cut(s) 812
BslI CCNNNNNNNGG 1 cut(s) 814
BsmAI GTCTC 1 cut(s) 739
BsmFI GGGAC 1 cut(s) 812
BsmI GAATGC 2 cut(s) 420, 504
BsnI GGCC 1 cut(s) 859
BsoBI CYCGRG 1 cut(s) 512
Bsp1286I GDGCHC 3 cut(s) 441, 477, 793
Bsp143I GATC 1 cut(s) 891
BspACI CCGC 1 cut(s) 576
BspANI GGCC 1 cut(s) 859
BspCNI CTCAG 2 cut(s) 70, 357
BspFNI CGCG 1 cut(s) 576
BspMI ACCTGC 1 cut(s) 767
BspTI CTTAAG 1 cut(s) 224
BssECI CCNNGG 2 cut(s) 491, 513
BssMI GATC 1 cut(s) 891
BssT1I CCWWGG 1 cut(s) 491
Bst2UI CCWGG 2 cut(s) 201, 809
Bst4CI ACNGT 1 cut(s) 602
Bst6I CTCTTC 1 cut(s) 675
BstAFI CTTAAG 1 cut(s) 224
BstAPI GCANNNNNTGC 2 cut(s) 162, 426
BstDEI CTNAG 2 cut(s) 78, 365
BstF5I GGATG 5 cut(s) 153, 209, 549, 823, 879
BstFNI CGCG 1 cut(s) 576
BstKTI GATC 1 cut(s) 894
BstMAI GTCTC 1 cut(s) 739
BstMBI GATC 1 cut(s) 891
BstMWI GCNNNNNNNGC 3 cut(s) 162, 426, 856
BstNI CCWGG 2 cut(s) 201, 809
BstSCI CCNGG 3 cut(s) 199, 234, 807
BstSFI CTRYAG 1 cut(s) 675
BstUI CGCG 1 cut(s) 576
BstV1I GCAGC 2 cut(s) 472, 658
BstV2I GAAGAC 1 cut(s) 363
BsuRI GGCC 1 cut(s) 859
BtsCI GGATG 5 cut(s) 153, 209, 549, 823, 879
BtsIMutI CAGTG 1 cut(s) 598
BveI ACCTGC 1 cut(s) 767
Cfr13I GGNCC 2 cut(s) 488, 832
CseI GACGC 1 cut(s) 582
Csp6I GTAC 1 cut(s) 812
CviAII CATG 4 cut(s) 442, 635, 757, 889
CviJI RGCY 9 cut(s) 77, 195, 364, 463, 497, 556, 595, 829, 859
CviKI_1 RGCY 9 cut(s) 77, 195, 364, 463, 497, 556, 595, 829, 859
CviQI GTAC 1 cut(s) 812
DdeI CTNAG 2 cut(s) 78, 365
DpnI GATC 1 cut(s) 893
DpnII GATC 1 cut(s) 891
Eam1104I CTCTTC 1 cut(s) 675
EarI CTCTTC 1 cut(s) 675
Eco130I CCWWGG 1 cut(s) 491
Eco47I GGWCC 2 cut(s) 488, 832
Eco57I CTGAAG 1 cut(s) 663
Eco88I CYCGRG 1 cut(s) 512
EcoRII CCWGG 2 cut(s) 199, 807
EcoT14I CCWWGG 1 cut(s) 491
ErhI CCWWGG 1 cut(s) 491
FaeI CATG 4 cut(s) 445, 638, 760, 892
FalI AAGNNNNNCTT 2 cut(s) 636, 668
FaqI GGGAC 1 cut(s) 812
FatI CATG 4 cut(s) 441, 634, 756, 888
FbaI TGATCA 1 cut(s) 891
Fnu4HI GCNGC 2 cut(s) 461, 672
FokI GGATG 5 cut(s) 160, 216, 556, 830, 866
Fsp4HI GCNGC 2 cut(s) 461, 672
FspBI CTAG 1 cut(s) 357
GluI GCNGC 2 cut(s) 461, 672
HaeIII GGCC 1 cut(s) 859
HapII CCGG 1 cut(s) 235
HgaI GACGC 1 cut(s) 582
Hin1II CATG 4 cut(s) 445, 638, 760, 892
HincII GTYRAC 1 cut(s) 622
HindII GTYRAC 1 cut(s) 622
HindIII AAGCTT 1 cut(s) 593
HinfI GANTC 4 cut(s) 13, 241, 581, 747
HpaI GTTAAC 1 cut(s) 622
HpaII CCGG 1 cut(s) 235
HphI GGTGA 5 cut(s) 22, 67, 152, 332, 791
Hpy166II GTNNAC 1 cut(s) 622
Hpy188I TCNGA 9 cut(s) 339, 479, 534, 613, 630, 728, 884, 896, 908
Hpy8I GTNNAC 1 cut(s) 622
HpyAV CCTTC 4 cut(s) 253, 440, 474, 776
HpyCH4III ACNGT 1 cut(s) 602
HpyCH4V TGCA 6 cut(s) 156, 165, 380, 617, 756, 776
HpyF10VI GCNNNNNNNGC 3 cut(s) 162, 426, 856
HpyF3I CTNAG 2 cut(s) 78, 365
Hsp92II CATG 4 cut(s) 445, 638, 760, 892
Ksp22I TGATCA 1 cut(s) 891
KspAI GTTAAC 1 cut(s) 622
Kzo9I GATC 1 cut(s) 891
LmnI GCTCC 2 cut(s) 251, 480
Lsp1109I GCAGC 2 cut(s) 472, 658
LweI GCATC 3 cut(s) 194, 604, 763
MaeI CTAG 1 cut(s) 357
MaeIII GTNAC 2 cut(s) 586, 646
MalI GATC 1 cut(s) 893
MboI GATC 1 cut(s) 891
MboII GAAGA 5 cut(s) 118, 363, 366, 692, 773
MhlI GDGCHC 3 cut(s) 441, 477, 793
MluCI AATT 4 cut(s) 114, 127, 731, 866
MlyI GAGTC 1 cut(s) 741
MroXI GAANNNNTTC 1 cut(s) 504
MseI TTAA 4 cut(s) 33, 42, 225, 621
MslI CAYNNNNRTG 1 cut(s) 755
MspCI CTTAAG 1 cut(s) 224
MspI CCGG 1 cut(s) 235
MspR9I CCNGG 3 cut(s) 201, 236, 809
Mva1269I GAATGC 2 cut(s) 420, 504
MvaI CCWGG 2 cut(s) 201, 809
MvnI CGCG 1 cut(s) 576
MwoI GCNNNNNNNGC 3 cut(s) 162, 426, 856
NciI CCSGG 1 cut(s) 236
NdeII GATC 1 cut(s) 891
NlaIII CATG 4 cut(s) 445, 638, 760, 892
NmuCI GTSAC 2 cut(s) 586, 646
PaqCI CACCTGC 1 cut(s) 767
PctI GAATGC 2 cut(s) 420, 504
PdmI GAANNNNTTC 1 cut(s) 504
PfeI GAWTC 3 cut(s) 13, 241, 581
PfoI TCCNGGA 2 cut(s) 199, 234
PkrI GCNGC 2 cut(s) 462, 673
PleI GAGTC 1 cut(s) 741
PpsI GAGTC 1 cut(s) 741
PshBI ATTAAT 1 cut(s) 42
Psp6I CCWGG 2 cut(s) 199, 807
PspGI CCWGG 2 cut(s) 199, 807
PspPI GGNCC 2 cut(s) 488, 832
PsrI GAACNNNNNNTAC 2 cut(s) 804, 836
RsaI GTAC 1 cut(s) 813
RsaNI GTAC 1 cut(s) 812
RseI CAYNNNNRTG 1 cut(s) 755
SaqAI TTAA 4 cut(s) 33, 42, 225, 621
SatI GCNGC 2 cut(s) 461, 672
Sau3AI GATC 1 cut(s) 891
Sau96I GGNCC 2 cut(s) 488, 832
SchI GAGTC 1 cut(s) 741
ScrFI CCNGG 3 cut(s) 201, 236, 809
SduI GDGCHC 3 cut(s) 441, 477, 793
SfaNI GCATC 3 cut(s) 194, 604, 763
SfcI CTRYAG 1 cut(s) 675
SinI GGWCC 2 cut(s) 488, 832
SmiMI CAYNNNNRTG 1 cut(s) 755
SmlI CTYRAG 1 cut(s) 224
SmoI CTYRAG 1 cut(s) 224
Sse9I AATT 4 cut(s) 114, 127, 731, 866
SsiI CCGC 1 cut(s) 576
SspMI CTAG 1 cut(s) 357
StyD4I CCNGG 3 cut(s) 199, 234, 807
StyI CCWWGG 1 cut(s) 491
TaaI ACNGT 1 cut(s) 602
TaqI TCGA 1 cut(s) 180
TasI AATT 4 cut(s) 114, 127, 731, 866
TfiI GAWTC 3 cut(s) 13, 241, 581
Tru1I TTAA 4 cut(s) 33, 42, 225, 621
Tru9I TTAA 4 cut(s) 33, 42, 225, 621
TscAI CASTG 1 cut(s) 605
TseFI GTSAC 2 cut(s) 586, 646
TseI GCWGC 2 cut(s) 460, 671
Tsp45I GTSAC 2 cut(s) 586, 646
TspDTI ATGAA 4 cut(s) 63, 80, 176, 868
TspRI CASTG 1 cut(s) 605
Vha464I CTTAAG 1 cut(s) 224
VpaK11BI GGWCC 2 cut(s) 488, 832
VspI ATTAAT 1 cut(s) 42
XapI RAATTY 1 cut(s) 731
XmnI GAANNNNTTC 1 cut(s) 504
XspI CTAG 1 cut(s) 357
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.